ID HQ670664; SV 1; linear; genomic RNA; STD; VRL; 3681 BP. XX AC HQ670664; XX DT 27-JUN-2011 (Rel. 109, Created) DT 27-JUN-2011 (Rel. 109, Last updated, Version 1) XX DE Rice black streaked dwarf virus isolate Korean major core protein gene, DE complete cds. XX KW . XX OS Rice black streaked dwarf virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus. XX RN [1] RP 1-3681 RA Wang Y., Choi J.Y., Roh J.Y., Je Y.H.; RT ; RL Submitted (02-DEC-2010) to the INSDC. RL Department of Agriculture Biotechnology, College of Agriculture and Life RL Sciences, Seoul National University, 599 Gwanakno, Gwanak-gu, Seoul RL 151-742, Korea XX DR MD5; 03b9a8f9fcec48676f5d2d6c3784cb20. XX FH Key Location/Qualifiers FH FT source 1..3681 FT /organism="Rice black streaked dwarf virus" FT /host="Oryza sativa L." FT /isolate="Korean" FT /mol_type="genomic RNA" FT /country="South Korea" FT /db_xref="taxon:10990" FT CDS 1..3681 FT /codon_start=1 FT /product="major core protein" FT /note="ORF2" FT /db_xref="UniProtKB/TrEMBL:F8SRK6" FT /protein_id="AEI60135.1" FT /translation="MNSEEKRKKNSNQDENEKKEPDKEERQEESKDEKKKNQSEIEQTS FT SPDPKLINDQEGITNDSRPEEITYQNGNTIQAKTALTVEAIMNIQGHLKQSDQKLVDEQ FT TSQYLTYLTSSVPAYTTTFGITDCSDFQLVPFYRTIDYTEDTSQQFPSLFCFNTFVNQY FT YDTDMTTFESKRYFEIFKDHPALLRSSETFPVNAYKVSVGWNGNSFAPEITDPTMIGDV FT SLIKNVSYVGVHSSDNYKDRKMFSRLKTFLEIAANCNLVLKGCRTKPLSIEYDNTRISK FT KLAGKKILYNDRAHIIFNGIYHAVTPFMNKVNDMLMDGNTEIDFEKIYKFGRDVEKRIN FT TYDMICRGYGNMDQFSSYLINLATQRICDNRMTANHYKTLMAANYPNRVSMHVFDTMID FT DLLFVYCPTEEDWKFCMFVIMIDKNIRSLIMNKSLSLMTSRNLFGQNDIGVKLTTLINN FT KNNSPTSREAVTYFMNVLAGGNVESFCQLLTAEMYARFIDFKVENTYVETEYLDILVLL FT EVLFAFLITPRLAWWNSHRFGRTLFNLMYTFCNDEWNKWEGEFGVFVKLQRGAWNKVNI FT SIDHYDLNDLLDGVVFSFLVQRQYTQKQLSDYPFISSIYTLIAPLGEYVNLTRKINAKY FT PFFETVVRGYLPCSAEDHKAASMINDVNTRVNAIGAAVHTVTKNYFSHNTVKTSVKESY FT NTLLNTIRIASNNLGLLMHYTVAPMLKTMYDSFLLVCDGFDKASPWKRPRMISYSGYNV FT LQDTGNQNADLINLLKGKGITVPLTPLHCFSKLYTYIAIGVHGVCRNDTVTTTGSFLSR FT NFYDPNTINILPFDGQEITDLALKIVGHSKRINTVFSIFNYLHKESESDILATVRERLA FT AFWTTSNGRAVLNEITKTFNCPVERYFEHENAFYTMDSDPRVYHPTLYTSDANGNIDSV FT QPATCAVHKKYKYGDEYLENMLKVISHVMFDDELPLFRQVEGLAFGYYSASTASPTDFF FT NVENDTEYFTINIDETPGVFRTTGTDGFSVQLAFTKDNVNHEYINPLSNAIPKIKFILK FT RLGNMNEHFVIFMKRMIDTKRHMVILTDVVVDYNIVTLSNWKDFKISEENVFDQFVLNR FT DLNNIQLNFYDTRFIIQNRTDELLDRYIYLSYRNITALKDFVVMGGIFGNPNQAINKLT FT DIDKDVYCFGERNGQTSKYFISKRDKIKGSTVNFNNHFTYLGPKSETRLPILDIRVSSQ FT L" XX SQ Sequence 3681 BP; 1248 A; 577 C; 646 G; 1210 T; 0 other; atgaattctg aggagaaacg aaaaaagaac tctaaccaag acgaaaacga aaagaaagaa 60 cctgacaaag aagagcgaca agaagaatcg aaagatgaaa agaagaaaaa tcaatctgaa 120 attgaacaaa cgtcgtcacc cgaccccaaa ctcataaatg atcaagaagg tataaccaat 180 gattcaagac cagaagaaat tacttatcag aatggtaaca caattcaagc taaaacagct 240 ttaactgttg aagcgataat gaacattcaa ggacatctta aacaatcaga tcaaaaatta 300 gtcgatgaac aaaccagtca atatctcact tatctaactt caagtgttcc cgcttacaca 360 actacttttg gtattactga ttgttcagat tttcaactgg tacctttcta tcgaaccatt 420 gactacactg aagatacttc acaacaattt ccttcattat tttgttttaa tacttttgtt 480 aatcaatatt atgatactga catgactact ttcgaaagta aaagatattt tgaaattttc 540 aaagatcatc ctgctttatt aagatcaagt gaaacatttc ctgttaatgc atataaagtt 600 agtgttggat ggaatggaaa tagctttgct cccgagatta cagaccctac aatgatcgga 660 gatgtatctt taattaaaaa tgtttcttat gttggtgttc acagttcaga caattataaa 720 gatagaaaga tgttttctcg actgaaaact ttccttgaaa tagctgccaa ctgtaattta 780 gttttgaaag gttgtagaac taagccctta tctatagaat atgacaacac tcgcatatcc 840 aaaaaattag ctggaaagaa aattctctat aatgaccgag cacatataat attcaatggt 900 atctatcatg cagttactcc ttttatgaat aaagtcaatg atatgctaat ggatggtaac 960 acagaaattg attttgagaa gatttacaaa tttggacgtg atgttgaaaa aaggattaac 1020 acttacgata tgatttgtcg tggctatggt aatatggacc aattttcatc ttatttaatt 1080 aatcttgcaa cgcagaggat ctgtgacaat agaatgacag ctaaccatta taaaactttg 1140 atggctgcaa attatccaaa tagagttagt atgcacgttt ttgacaccat gattgatgac 1200 ttgttatttg tgtattgtcc aactgaagaa gattggaagt tttgcatgtt tgtaattatg 1260 atagataaga acattagatc attaattatg aataaatctt tgtcattgat gacttcccga 1320 aatttgtttg gtcaaaacga cattggtgtg aaacttacta cattgattaa taataagaat 1380 aatagtccta catctcgaga agcagttact tatttcatga atgttttagc tggtggtaat 1440 gttgagagtt tttgccaatt gttaacagcc gaaatgtacg ctagatttat agattttaaa 1500 gttgaaaata cttatgttga aactgaatat ttggacattt tagtattact tgaagtttta 1560 tttgcttttt tgattacacc tcgtttagca tggtggaaca gtcatagatt tggtcgtacg 1620 ttgttcaatc ttatgtatac tttctgtaat gatgaatgga acaaatggga aggagaattt 1680 ggtgtttttg ttaaattaca acgtggagca tggaacaaag ttaacatttc aatagaccat 1740 tacgatttaa acgatttgtt ggatggagtt gtttttagct ttttagttca acgacaatat 1800 actcaaaagc aattgtctga ttatccgttt attagttcaa tttatacctt gattgctcct 1860 ttgggagaat atgtaaactt aactagaaag attaacgcta aatatccttt ctttgaaact 1920 gtagttcgtg ggtatttgcc ttgttcagct gaagatcata aagcagcaag catgatcaat 1980 gatgtaaata caagagttaa cgctattgga gctgctgttc atacagtaac taaaaattat 2040 ttcagtcata acacagtcaa aacctcagta aaagaatcct ataatacttt gttgaataca 2100 attagaattg cttctaataa tttaggactt ttgatgcatt acactgtagc gcctatgtta 2160 aaaacgatgt atgactcatt cttacttgtt tgcgatggtt ttgataaagc tagcccttgg 2220 aaaagacctc gtatgatttc ttatagtggt tataatgtac tgcaggacac aggtaatcaa 2280 aacgctgatt taatcaattt attgaaaggt aaaggcatta ctgtgcctct gactccgctt 2340 cattgtttta gtaaacttta cacttatatt gccattggag tgcatggcgt atgtcgaaat 2400 gataccgtga ctacaactgg aagttttttg tctcgtaatt tttatgatcc taacaccatt 2460 aatattttac cttttgatgg ccaagagatc actgatttag cattgaaaat tgtcggtcat 2520 agtaaaagga ttaatactgt attttccata tttaactatc tacacaaaga gagcgagagt 2580 gatattttgg caactgtgag agagagactt gccgctttct ggacaacgag caatggaaga 2640 gctgttttaa atgagattac caaaactttt aattgtcctg tcgaaagata ctttgaacat 2700 gaaaatgctt tctacactat ggattctgat cctcgtgttt atcatcccac tttatacact 2760 tctgacgcta atggtaacat cgattcagtt caacctgcta catgcgcagt tcataagaag 2820 tataaatatg gtgatgagta cttagagaac atgctaaaag taatttctca cgttatgttt 2880 gatgatgaac ttcctttatt ccgccaagtt gagggattag cttttggata ttatagtgct 2940 agcaccgctt cacctactga cttttttaat gtggagaacg atactgagta ttttactatt 3000 aacatagatg aaactcccgg tgtctttaga acgacaggaa ctgacggatt tagtgtgcaa 3060 ctagccttca caaaagataa tgtgaatcat gagtatatca atcccctatc gaacgctatc 3120 cccaaaatca aatttatatt gaagagatta ggcaatatga acgaacactt tgttatattt 3180 atgaaacgaa tgattgatac gaaaagacac atggtgattt tgactgacgt agttgttgat 3240 tataacattg tcactttgtc taattggaaa gattttaaaa tcagtgaaga aaatgtcttt 3300 gatcagtttg tgttaaatag agatttgaac aacatccaac ttaattttta tgatactcgt 3360 ttcatcatcc agaacagaac tgatgaactg ttagaccgtt acatttattt aagctatcgt 3420 aacattactg ctttaaaaga tttcgttgtc atgggaggaa tattcggcaa tcctaatcaa 3480 gctattaaca aattgaccga tattgacaaa gatgtttatt gtttcggaga gagaaatggt 3540 caaacttcaa aatactttat cagtaaaaga gacaaaatta aaggtagcac cgtcaacttc 3600 aataatcatt ttacttacct tggacctaaa tcagaaacgc gtcttccaat tctagatata 3660 agagtgtcat cgcagttgta a 3681 //