ID HQ670663; SV 1; linear; genomic RNA; STD; VRL; 4395 BP. XX AC HQ670663; XX DT 27-JUN-2011 (Rel. 109, Created) DT 27-JUN-2011 (Rel. 109, Last updated, Version 1) XX DE Rice black streaked dwarf virus isolate Korean RNA-dependent RNA polymerase DE gene, complete cds. XX KW . XX OS Rice black streaked dwarf virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus. XX RN [1] RP 1-4395 RA Wang Y., Choi J.Y., Roh J.Y., Je Y.H.; RT ; RL Submitted (02-DEC-2010) to the INSDC. RL Department of Agriculture Biotechnology, College of Agriculture and Life RL Sciences, Seoul National University, 599 Gwanakno, Gwanak-gu, Seoul RL 151-742, Korea XX DR MD5; e14348ec39c75c7c719e3974d514f1e6. XX FH Key Location/Qualifiers FH FT source 1..4395 FT /organism="Rice black streaked dwarf virus" FT /host="Oryza sativa L." FT /isolate="Korean" FT /mol_type="genomic RNA" FT /country="South Korea" FT /db_xref="taxon:10990" FT CDS 1..4395 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="ORF1" FT /db_xref="GOA:F8SRK5" FT /db_xref="UniProtKB/TrEMBL:F8SRK5" FT /protein_id="AEI60134.1" FT /translation="MVERKFSRSAEICLKKSESIQQFRQKKQQQEASTDKSHSQSVKIK FT PPGPRASDSKKDSSTRRDENASKYSPNFQQAKDEYIQLLHSKDVALDVIIEKAEDIRNV FT FIGELPLTREVIENNLNDVAVVLNNASDLILKLFQSDNGILQECVVPVSVIQKDIFPVL FT HPSEIFDYNGFGIDETNNLAISPTIRYLPNWNVQKIRNTIDLLKNDNTVVKARNLASDF FT GLVSNTLKRRLLIGIDRMFNKLSIQHRFGTFESQIFSCFLMKQLLTEEQCYVNLPNCIR FT KSKFQKRGIDTVCWQYLRQILLHYNCFPFYHHTHNARFGVLDSTKISIHTDLPVSCVLP FT SVLHGLLNGIVSEMLCDLNSDTALIYAKHLMNCSQQSTYQRQLDFKDDFRSWPKLCYDK FT IGYVLAVLYSSDMKPLGQRIEHIDSEFWIDEKEKTTLELSVSKLPEYMKKFVVESINNC FT VKLGNEVKSKISANQTILLSRDLSNDEVISARLSASKNTEFLRWLTMTSTIVSNFGIYN FT KTSLLLEYEKSVGTKQDVMVSKPDCKISIVTEQGMTIPLINDWSKVPILNEMSELFDQN FT WKSDLINEFENIDDFEKRFVTFLTNKSGGQKSEEPTLSKELKGISNARVIAFALNRNDY FT HDELKFIKMLMSYGKCAIRFQIDRRARVIVIVPNAIQSSELFLLLGFNALKTNKKHNEK FT IAVGKQIGNLLDARVQMCNTGDVSSVKNSGDMKGMDAHAIPNLTLFLRNKMIEVLFELD FT PSKNCSRFFFSEDKEYTLKEKHPQFEEIYSRKLRGVVIHAAKCLFYMFSMNMYLDDHFF FT ADSQTVSDQTFQTGFFATSAPHTLFLSLFLLNLDRKFFSFLDNRLISGMHSVMGHDVLE FT VIKNGVKFPDVGRIWVSLRQNDLSKLNYEEELSLSRMYGVFLLQAVLLEVYVPSTLRMS FT LFCDERSDTTKRHTLDMIKIIMDVISAKAQRSYGIDNGLSIGYSIWSCHRSSRYIYSDV FT DKVKISKLVEMNKNFGFNFIVSHNVSEKSIRFIYPFVTVMCSPISWPMLTFAMPDAANG FT NNILTYRSKAFTSLNGDGAYMLINQMFFTSNEQHMFQFVDYVKHQSKVVGLELNSNFLD FT WETRHKWGFTFGEHLLRFKRLRHLTESRKNELGIGDIEVMVHNLNKYLDSNRVLMSFNS FT ISVLKSHKIEVPYGLMYVNHNRSKIDQSLTVRTESLEERAFLDSVFLKHILDYNLIPKD FT LEVLKSHALCAVKLRIYGDFDYSCEHDGVIEPSQGAQFNILLPFLPGYHLNSAYGKLFS FT YSTLPTVRDRDISGTLGEITGSLSASFDVGAASEFGAHVYNVNPSLVDAAGTAIGIPQG FT LLNHYKNLVNAFVMNNFNLKYHSIFLNVKYFGLNGSLKHFSQYGDYSSRLVRFDSINKL FT DRYHNVFVRDFIFAYIHELNGRRVYLDYSIHSLLLVMSRGSIKYFTSHLSQLFNPMLTL FT EFD" XX SQ Sequence 4395 BP; 1447 A; 627 C; 801 G; 1520 T; 0 other; atggtggaac gaaagttcag tagatctgca gaaatttgct taaagaaatc tgaatcaatc 60 caacaattta gacagaagaa acaacaacaa gaagcaagca cagataaatc acattctcaa 120 agtgtaaaaa tcaaaccgcc cggcccacgt gcttcagaca gtaaaaaaga ttcttcaaca 180 cgaagagatg aaaatgcttc caaatatagt ccaaattttc aacaagccaa agatgaatat 240 atccaattat tacattccaa agacgtggca ttagatgtaa ttatcgaaaa agctgaagac 300 ataagaaatg tttttattgg tgaacttcct ctcactcgag aagtgataga aaataacctt 360 aatgatgttg ctgttgtttt gaataatgct agcgatttaa ttcttaaatt atttcaatca 420 gataacggaa ttcttcaaga atgtgttgtt ccagttagcg tgatccaaaa agatattttt 480 cctgttttgc atccttcaga aatctttgat tataatggat ttggaataga tgagacaaac 540 aacttagcaa tcagtcctac cattcgatac ttacctaact ggaatgttca gaaaattcgt 600 aatactattg accttttgaa aaatgataat acagttgtca aagcaagaaa tttagctagt 660 gattttggat tggttagtaa tacattgaaa agaagattat tgattggaat tgacagaatg 720 tttaacaaac tgagcataca acatcgattt ggaacatttg agagtcagat ttttagttgt 780 tttctaatga aacagttgtt aacagaggaa cagtgttatg ttaatcttcc aaattgcatc 840 agaaaatcaa aattccaaaa aagaggaata gacacagttt gttggcaata cttaagacaa 900 attcttcttc attataattg ttttcctttt tatcatcaca ctcataatgc cagatttgga 960 gttttagata gcacgaaaat ttcaattcat actgatttgc ctgtatcatg tgttcttcca 1020 agtgttttac atgggttatt gaatggaata gtttctgaaa tgttgtgtga cttaaattct 1080 gatactgctt tgatatacgc taaacatcta atgaactgtt ctcaacagtc aacatatcaa 1140 agacaacttg actttaaaga tgatttccgt tcttggccta aattatgtta cgataagatt 1200 ggatatgtgt tagctgtatt atattcttct gatatgaaac cattaggaca gagaattgag 1260 cacattgatt ctgagttttg gatagatgag aaagagaaaa ctacgttaga attgagtgtt 1320 agtaagttgc ctgaatatat gaaaaaattt gtggttgagt caattaataa ttgtgtaaag 1380 ctaggtaatg aagttaaatc taaaatatcc gcaaatcaaa ctattttgtt atctcgagat 1440 ctttcaaatg atgaagtgat ttcagcgcgt ttgtcagcta gtaaaaacac tgaatttctt 1500 agatggttaa caatgactag tactattgtt tcgaattttg gaatctataa taagacgtcg 1560 ctattactag agtatgaaaa gtctgtaggc acaaaacaag atgtgatggt atcaaaacct 1620 gactgtaaaa ttagcattgt aactgaacaa ggaatgacta ttcccctaat taatgattgg 1680 tctaaggtac ctattttgaa cgaaatgtcg gaactttttg atcaaaattg gaaatcagat 1740 ttaattaatg aatttgaaaa tatcgatgat tttgaaaaaa gatttgtaac atttttgact 1800 aataaatcag gtggacagaa gagtgaagaa cctactttat caaaagaatt gaaaggaatt 1860 tctaatgcta gagttattgc atttgcttta aacagaaacg actatcatga cgagctaaaa 1920 ttcattaaaa tgttaatgtc ttacggtaag tgtgctatac gatttcaaat tgacaggaga 1980 gctagagtaa ttgttatcgt cccgaatgcg attcaatcaa gcgaactttt tttgttgtta 2040 ggttttaacg cccttaagac taataaaaag cataatgaaa aaattgcagt tggaaaacaa 2100 attggtaatc ttttagatgc tagagttcaa atgtgtaaca caggtgatgt cagttctgta 2160 aaaaattctg gagatatgaa aggtatggat gctcatgcca tccctaacct tactttattt 2220 ttaaggaata agatgattga agtgcttttt gaattggatc caagtaaaaa ttgttctagg 2280 ttctttttta gtgaagataa ggaatatact ttgaaagaaa agcatcctca gtttgaagaa 2340 atatatagtc gtaaattaag aggcgttgtc attcacgctg ctaagtgttt gttttacatg 2400 ttttcaatga atatgtattt agatgaccat ttctttgctg atagtcaaac tgtatctgac 2460 caaacatttc aaacggggtt tttcgctact tcagctcccc acacattgtt tttgagtttg 2520 tttttattaa atttagatag aaaattcttt tcatttcttg ataataggct aatttcaggt 2580 atgcattcgg ttatgggaca cgatgtctta gaagtgatca agaatggcgt taaatttcct 2640 gatgtaggtc gtatatgggt gtccttacgg caaaatgatt tgtcaaagtt aaattatgaa 2700 gaagagttgt ccttatccag aatgtatggt gtttttctac tgcaagcagt actgttagaa 2760 gtgtacgtac cctctacttt aagaatgtca ttattttgcg atgaaagatc tgatactacg 2820 aagagacaca cattagatat gattaaaata ataatggacg taatttcagc taaagctcaa 2880 agatcttatg gtattgataa cggattaagc attggttata gtatttggag ttgtcatcgt 2940 agttcacgtt atatttattc tgatgttgat aaagttaaga tatctaaatt ggttgaaatg 3000 aataaaaatt ttggttttaa tttcatagtg tcccataacg tttctgaaaa atcaattcgt 3060 tttatatatc cgtttgtcac tgttatgtgt tctccaattt cttggcctat gttaactttc 3120 gccatgccag atgccgccaa tggcaataac atattaactt acagaagtaa agctttcact 3180 tcccttaatg gtgatggtgc ttatatgttg attaaccaaa tgttttttac cagtaatgaa 3240 caacatatgt ttcaatttgt cgattatgta aaacatcaat ctaaagtggt aggattggag 3300 ttaaattcaa attttttgga ttgggagact agacataaat ggggtttcac ttttggagaa 3360 catttgctac gtttcaaacg ccttcgtcat ttgactgaaa gcagaaaaaa tgaattagga 3420 ataggagata tagaagttat ggtacataat ttgaacaaat atttagatag taatagggtt 3480 ttgatgagtt ttaatagtat ttctgttcta aaatcacaca aaattgaggt tccctatggg 3540 ttaatgtatg ttaatcataa tcgttccaaa attgaccagt ctctaaccgt tagaacagaa 3600 tctttggagg aaagagcgtt tcttgattca gtttttctta aacacatatt agattacaac 3660 ttgattccta aagacttgga agttttgaaa tcgcatgctc tatgcgctgt taaattgaga 3720 atttatggtg attttgatta ttcttgcgaa catgatggtg taattgaacc cagtcaaggt 3780 gctcagttca acattttgct tccttttcta cctggctacc atcttaacag tgcttatggt 3840 aaattatttt catattctac tttgcctact gtgcgtgatc gagatatttc tggaacttta 3900 ggagagatta ctggatcgtt aagtgcctca tttgatgttg gcgctgcaag tgaattcgga 3960 gctcatgttt ataatgtaaa tcccagtcta gttgatgctg ctggcaccgc aattggtatt 4020 ccacaaggat tgctcaatca ctataaaaat ttagttaatg cttttgtgat gaataatttt 4080 aatttgaaat atcattctat ctttttaaat gtaaaatatt ttggtttgaa tggaagttta 4140 aaacattttt cgcaatatgg tgactattcc agtcgtttag tgcgctttga ttcaataaat 4200 aaattagaca gatatcataa tgtgtttgtg cgtgatttta tttttgctta cattcatgaa 4260 ttaaatggcc gtagggtgta cttagattat agtatccata gtcttttgct cgtgatgtct 4320 cgaggttcaa taaaatattt cacttcccat ctctcacaat tgtttaatcc catgcttact 4380 ctggagttcg actga 4395 //