ID HQ667980; SV 1; linear; genomic RNA; STD; VRL; 6311 BP. XX AC HQ667980; XX DT 27-JUN-2011 (Rel. 109, Created) DT 22-JUL-2012 (Rel. 113, Last updated, Version 2) XX DE Ribgrass mosaic virus strain Kons.1105-V2 isolate R14, complete genome. XX KW . XX OS Ribgrass mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6311 RX DOI; 10.1007/s00705-012-1292-0. RX PUBMED; 22456910. RA Chavan R.R., Cohen D., Blouin A.G., Pearson M.N.; RT "Characterization of the complete genome of ribgrass mosaic virus isolated RT from Plantago major L. from New Zealand and Actinidia spp. from China"; RL Arch. Virol. 157(7):1253-1260(2012). XX RN [2] RP 1-6311 RA Chavan R.R., Pearson M.N.; RT ; RL Submitted (01-DEC-2010) to the INSDC. RL School of Biological Sciences, The University of Auckland, Thomas Building, RL Private Bag 92019, Symonds Street, Auckland, North Island 1142, New Zealand XX DR MD5; 6a1294b9d701d136837ad29554a2bf23. DR RFAM; RF00225; IRES_Tobamo. DR RFAM; RF01072; TMV_UPD-PK3. XX FH Key Location/Qualifiers FH FT source 1..6311 FT /organism="Ribgrass mosaic virus" FT /host="Plantago sp." FT /strain="Kons.1105-V2" FT /isolate="R14" FT /mol_type="genomic RNA" FT /country="Germany" FT /collected_by="Heinze, C" FT /collection_date="21-Apr-2009" FT /db_xref="taxon:51680" FT 5'UTR 1..67 FT CDS 68..4873 FT /codon_start=1 FT /transl_except=(pos:3389..3391,aa:Tyr) FT /product="replicase readthrough component" FT /note="RNA replicase; contains RNA polymerase; translated FT by readthrough" FT /db_xref="GOA:F8SRG0" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:F8SRG0" FT /protein_id="AEI69664.1" FT /translation="MAQFQQTIDMQTLQAAAGRNSLVNDLASRRVYDNAVEELNARSRR FT PKVHFSKAVSTEQTLIATNAYPEFEISFTHTQSAVHSLAGGLRSLELEYLMMQVPFGSL FT TYDIGGNFSAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAIQSYINRLERQRRPVPEYQ FT KAAFNNYAENPRYVHCDRPFQQCELTTANGTDTYAVALHSIYDIPVEEFGSALLRKNVK FT TCFAAFHFHENMLLDCDTVTLDEIGATFQRAGDKLSFFFHNESTLNYTHSFSNIIKYVC FT KTFFPASQRFVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYHNNVDCEEFYKAMDDAWE FT YKKTLAMLNAERTIFKDNAALNFWFPKVRDMVIVPLFDASITSGKMSRREVMVNKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLIT FT KLGHVQDEIILKKFQKFDRSTKELIWSSLCDALMGVIPSVKETLVRGGFVKVAEEALEI FT KIPELYCTFSDRLVLQYKKAEEFQSCDLSKPLEESEKYYNALSELSVLENLDSFDLEAF FT KTLCQQKNVDPDMAAKVVVAIMKCELTLPFKKPTEEEISESLKTEEAKSAERDDVLSLR FT NDAPYPCVKNLVEGSVPAYGICPKGGGFDKFDVDIADFHLKSVDAVKRGAMMSAVYTGS FT IKVQQMKNYIDYLSASLSATVSNLCKVLRDVHGADPESQEKSGVWDVRRGRWLLKPNAK FT SHAWGVAEDANHKLVIVLLNWDEGKPVCDETWFRVAVSSDSLVYSDMGKLKTLTSCCLD FT GEPPEPYTKVILVDGVPGCGKTKEIIEKVNFSEDLILVPGKEASKMIIRRANHAGVMRA FT DKDNVRTVDSFLMHPPRRVFKRLFIDEGLMLHTGCVNFLLLLSHCDVAYVYGDTQQIPF FT ICRVANFPYPAHFAKLVVDEKEVRRITLRCPADVTFFLNKKYDGAVMCTSAVERSVGAE FT VVRGKGALNPITLPLEGKILTFTQADKFELLEKGYTDVNTVHEVQGETYEKTAIVRLTS FT TPLGIISRASPHVLVALTRHTTRCRYYTVVLDPMVSVIPEMEKLSNFILDMYKVEAGIQ FT YQLQIDAVFKGTNLFVQTPKSGDWRDMQFYYDALLPGNSTILNEFDAVTMNLRDISLNV FT KDCRIDFSKSVQIPKEQPSFLKPKIRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTID FT IEDTASLVAEKFWDAYIDKEFSGTNKMSLTRESFSRWLSKQETSTIGQLADFNFVDLPA FT VDEYKHMIKSQPKQKLDLSIQDEYPALQTIVYHSKKINAIFGPMFAELTRMLLERVDSS FT KFLFYTRKTPGQIEEFFSDLDSTQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDE FT WLAEVWKQGHRKTTLKDYTAGIKTCLWYQRKSGDVSTFIGNTIIIATCLSSMIPMDKVI FT KAAFCGDDSLIYIPKGIDLPDIQAGANLMWNFEAKLFRKKYGYFCGRYVIHHDRGAIVY FT YDPLKLISKLGCKHIRDVVHLEELRESLCDVTSNLNNCAYFSQLDEAVAEVHKTAVGGS FT FAFCSIVKYLSDKRLFKDLFFV" FT CDS 68..3391 FT /codon_start=1 FT /product="RNA replicase component" FT /note="contains capping methyltransferase and RNA helicase FT domains" FT /db_xref="GOA:F8SRG1" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:F8SRG1" FT /protein_id="AEI69665.1" FT /translation="MAQFQQTIDMQTLQAAAGRNSLVNDLASRRVYDNAVEELNARSRR FT PKVHFSKAVSTEQTLIATNAYPEFEISFTHTQSAVHSLAGGLRSLELEYLMMQVPFGSL FT TYDIGGNFSAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAIQSYINRLERQRRPVPEYQ FT KAAFNNYAENPRYVHCDRPFQQCELTTANGTDTYAVALHSIYDIPVEEFGSALLRKNVK FT TCFAAFHFHENMLLDCDTVTLDEIGATFQRAGDKLSFFFHNESTLNYTHSFSNIIKYVC FT KTFFPASQRFVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYHNNVDCEEFYKAMDDAWE FT YKKTLAMLNAERTIFKDNAALNFWFPKVRDMVIVPLFDASITSGKMSRREVMVNKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLIT FT KLGHVQDEIILKKFQKFDRSTKELIWSSLCDALMGVIPSVKETLVRGGFVKVAEEALEI FT KIPELYCTFSDRLVLQYKKAEEFQSCDLSKPLEESEKYYNALSELSVLENLDSFDLEAF FT KTLCQQKNVDPDMAAKVVVAIMKCELTLPFKKPTEEEISESLKTEEAKSAERDDVLSLR FT NDAPYPCVKNLVEGSVPAYGICPKGGGFDKFDVDIADFHLKSVDAVKRGAMMSAVYTGS FT IKVQQMKNYIDYLSASLSATVSNLCKVLRDVHGADPESQEKSGVWDVRRGRWLLKPNAK FT SHAWGVAEDANHKLVIVLLNWDEGKPVCDETWFRVAVSSDSLVYSDMGKLKTLTSCCLD FT GEPPEPYTKVILVDGVPGCGKTKEIIEKVNFSEDLILVPGKEASKMIIRRANHAGVMRA FT DKDNVRTVDSFLMHPPRRVFKRLFIDEGLMLHTGCVNFLLLLSHCDVAYVYGDTQQIPF FT ICRVANFPYPAHFAKLVVDEKEVRRITLRCPADVTFFLNKKYDGAVMCTSAVERSVGAE FT VVRGKGALNPITLPLEGKILTFTQADKFELLEKGYTDVNTVHEVQGETYEKTAIVRLTS FT TPLGIISRASPHVLVALTRHTTRCRYYTVVLDPMVSVIPEMEKLSNFILDMYKVEAGIQ FT " FT CDS 4876..5679 FT /codon_start=1 FT /product="movement protein" FT /note="intercellular transport of virus" FT /db_xref="GOA:F8SRF8" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:F8SRF8" FT /protein_id="AEI69666.1" FT /translation="MSMVSYEPKVNDFLFLTNKEKILPKALTRLKTVSISTKDIISVKE FT SETLCDIDLLIDVPLDKYRYVGILGAVFTGEWLVPDFVKGGVTISVIDKRLVNSKECVI FT GTYRAAAKSKRFQFKLVPNYFVSTADAKRKPWQVHVRIQDVKIEAGWQPLALEVVSVAM FT VANNVVMKGLREKIIAISDPDVEGFEGVVDDFVDSVEAFRAVDNFRKKKRKIGEKEAVS FT RNKYRPEKHAGPNSLYIKEENVLQHHELESVPVLRSGVGRTHTNA" FT CDS 5603..6076 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:F8SRG3" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:F8SRG3" FT /protein_id="AEI69667.1" FT /translation="MSYNITSSNQYQYFAAVWAEPTPMLNQCVSALSQSFQTQAGRDTV FT RQQFSNLLSAIVAPNQRFPDTGFRVYVNSAVIKPLYEALMKSFDTKNRIIETEEESRPS FT ASEVANATQRVDDATVAIRSQIQLLLNELSNGHGYMNRAEFEAILPWTTTPAT" XX SQ Sequence 6311 BP; 1833 A; 1189 C; 1590 G; 1699 T; 0 other; gtttagtttt attgcaacaa caacaacaaa atacaataac aacaaacaaa atacaaacaa 60 caacaacatg gcacaatttc agcaaacaat cgacatgcaa actctccaag ctgctgcggg 120 acgcaacagt ctggtgaatg atttggcgtc tcgtcgcgtt tatgataacg cggttgagga 180 gctgaatgct cgttcaagac gtcccaaggt tcatttctcc aaagcagtgt caacggaaca 240 gaccctgatc gcaacaaacg cttatccgga gttcgagatc tcttttactc atacgcaatc 300 tgcagtgcat tccttggctg gaggcctcag atcgcttgaa ctggagtatc tcatgatgca 360 agttccattt ggatctttga cgtatgatat tggcggtaac ttttctgcgc atcttttcaa 420 agggcgcgat tatgttcact gctgcatgcc taatttggac gtgcgtgaca ttgctcgcca 480 cgagggacac aaggaagcca ttcaaagcta cataaatcgt ctggagagac agcggcgacc 540 tgtgcctgaa tatcagaagg cagctttcaa taattacgcg gagaatccac gttacgttca 600 ttgtgaccgt ccttttcaac agtgtgaatt gacgacagca aatggtactg atacttacgc 660 tgtagcgctt catagcattt atgacatccc tgttgaagag tttggttcgg cgcttctcag 720 gaagaacgtc aagacttgtt tcgcggcttt ccatttccac gagaatatgc ttcttgattg 780 tgacactgtt acactcgatg aaatcggagc aactttccag agagctggcg ataaactgag 840 ttttttcttc cataatgaga gcactcttaa ctatacccat agctttagta atataataaa 900 atatgtgtgt aaaacgttct ttccagctag tcaacggttt gtgtatcata aggagttctt 960 agttactaga gtcaatactt ggtattgtaa gtttactaga gtggatactt ttactctgtt 1020 ccgtggtgtg tatcataata atgtagactg cgaagagttt tacaaggcta tggacgatgc 1080 gtgggagtac aaaaagacgc ttgcgatgct aaatgcagaa agaaccattt tcaaggataa 1140 cgcagcgttg aacttttggt tcccgaaagt gagggatatg gtcatcgtcc ctctttttga 1200 cgcgtctatc acgtctggga aaatgtccag gagagaagtt atggtgaaca aggatttcgt 1260 ttacacggtc cttaatcata taaagacgta ccaagccaaa gctttaactt acgcaaacgt 1320 tctgtccttc gtagagtcaa ttaggtctag agttataatc aacggtgtaa ctgccaggtc 1380 tgaatgggac acagataagg cgattctagg tcctttagcg atgacatttt tccttataac 1440 aaagttgggt catgtacagg atgagataat cctgaaaaag ttccagaagt tcgacagatc 1500 caccaaagag ttaatttggt ccagtctctg cgatgccctg atgggggtta ttccctcggt 1560 caaagagact cttgttcgtg gtgggtttgt gaaagtggca gaagaggcct tagagattaa 1620 gatccctgaa ttgtactgca cgttctccga tagattggta ctgcagtata agaaagcaga 1680 agagtttcaa tcgtgcgacc tttccaaacc tctagaagaa tctgagaagt attacaacgc 1740 attatctgag ctatctgtgc tcgagaatct cgattcattt gatctagagg cgtttaagac 1800 tttgtgtcag cagaaaaacg tagatccgga tatggcggct aaggtagtgg tggcaattat 1860 gaagtgtgag ttgacgttgc ctttcaagaa gcctactgaa gaggaaatct cagagtcact 1920 taaaaccgag gaggcgaaaa gcgcggaacg cgacgatgtg ttgagcttac gaaacgatgc 1980 tccttaccca tgtgtgaaaa atctcgtaga aggttctgta ccagcgtacg gaatatgtcc 2040 gaaaggtggt ggtttcgaca agtttgatgt ggacattgcc gattttcatc tcaagagtgt 2100 agatgcagtg aagagggggg ccatgatgtc tgcggtgtat acaggatcga ttaaagttca 2160 acagatgaag aactacatcg attacttaag tgcgtcgctg tcagcaactg tctccaatct 2220 ctgtaaagtg cttagagatg ttcatggtgc tgatccagaa tcacaggaga aatccggagt 2280 gtgggacgtg aggagaggac gatggttact taaaccaaac gcgaagagtc acgcttgggg 2340 agttgctgag gatgccaacc acaagttggt catagtattg ctcaactggg atgaggggaa 2400 accagtctgt gacgagacat ggttccgagt agctgtgtca agcgattctt tagtgtactc 2460 cgatatggga aaactgaaga cgctaacgtc ctgctgttta gatggagaac ctccggagcc 2520 gtacacaaaa gtgattttgg ttgacggcgt tcctggatgt ggaaagacga aggagattat 2580 cgaaaaggtg aacttctctg aggatttgat tttagtccct gggaaagaag cctcgaagat 2640 gattatcaga agggcaaatc atgccggcgt gatgagagca gacaaggata acgtaagaac 2700 ggtagattcc tttctaatgc accctccgag gagagtgttt aagaggttat ttatcgacga 2760 ggggttaatg ctgcacaccg gttgtgtaaa tttcttgcta ctattatcgc attgtgacgt 2820 ggcgtacgtg tatggggaca cacaacagat tccgtttatc tgtagagttg cgaatttccc 2880 gtatcctgca cactttgcaa agcttgtggt ggatgagaag gaggtcagaa gaatcacgct 2940 aagatgccct gctgatgtca catttttcct gaacaagaag tacgacgggg cggtaatgtg 3000 taccagcgct gtagagaggt ccgtaggggc agaagtggta agaggaaaag gtgctctgaa 3060 cccgataact ttaccgttgg agggaaaaat tttgaccttt acacaggctg acaagttcga 3120 attgttggaa aaggggtaca cggatgtgaa cactgtgcat gaggtacaag gggaaacata 3180 cgagaagaca gctattgttc gattgacttc gactccgtta gggatcatat caagagcatc 3240 accgcatgtg ctagtggcgc tgacaagaca cacaacgcgt tgtcggtatt ataccgttgt 3300 gttagacccg atggtaagtg tgatcccgga aatggaaaag ttgtcaaact tcattctcga 3360 tatgtacaag gtcgaagctg gcatccaata gcaattacag atagatgcag tattcaaagg 3420 aacgaatctt ttcgttcaga cacccaagtc aggcgattgg cgagatatgc agttctacta 3480 tgacgctctt cttcctggaa acagcacaat tcttaatgaa tttgatgccg ttactatgaa 3540 tttgagggat atttccttaa acgtcaagga ttgcagaatc gacttctcca agtccgtgca 3600 aattcccaaa gagcaaccaa gttttctcaa gcctaagata agaaccgcgg cagaaatgcc 3660 aagaacagca ggtttgcttg aaaatttagt cgctatgatt aaaagaaaca tgaatgcacc 3720 ggatttgaca gggacgattg acatagagga tactgcatca ttggtggctg agaagttttg 3780 ggacgcttac attgacaagg aattcagtgg aacgaataaa atgtccttaa caagggaaag 3840 tttttctaga tggctctcta aacaagagac gtctacgatc ggtcagctgg cggacttcaa 3900 ctttgtagat ttgccggcag tggatgagta caagcatatg atcaagagcc aacctaaaca 3960 aaagttagac ttaagcattc aggacgaata tcctgcgttg cagacgatag tctatcactc 4020 gaaaaagatc aatgctattt tcggtcccat gtttgcggaa cttacgagga tgctgctcga 4080 gagggtggat tcctcaaaat ttctgtttta cacgaggaaa acacctggtc aaattgaaga 4140 atttttctct gaccttgact cgacccaggc gatggaaatt ctggaactcg acatctcaaa 4200 gtacgataag tcacaaaacg agtttcactg cgctgtggag tataagatct gggaaaagct 4260 tgggatagat gagtggctag cagaagtgtg gaagcaggga cacaggaaaa cgaccttgaa 4320 ggactatacg gccgggatca aaacgtgtct ttggtatcaa aggaaaagcg gtgatgtgtc 4380 aacctttatc ggtaacacta taatcattgc aacctgtctg agttcgatga ttccgatgga 4440 caaagtgatt aaagcagcct tttgtgggga tgacagttta atttatatcc ccaaaggaat 4500 agacttgcct gatattcagg caggtgcaaa ccttatgtgg aatttcgagg ctaagctttt 4560 taggaaaaag tatggttact tctgtggtcg ttacgtgatt caccatgata gaggagcaat 4620 agtatattac gatccactta aactaatatc taagttaggt tgtaaacata ttagggatgt 4680 agtccattta gaagagttac gtgagtcttt gtgtgatgta actagtaact taaataattg 4740 tgcgtatttt tcacagttgg atgaggccgt tgccgaggtt cataaaaccg cggttggcgg 4800 atcgtttgct ttttgcagta tagttaaata tttgtcagat aaaaggttgt ttaaagattt 4860 gttttttgtt tgataatgtc gatggtctcg tacgagccta aggtgaatga ttttcttttt 4920 ctcacgaata aggaaaagat actcccgaaa gctcttacta ggttgaagac cgtgtctatt 4980 agtactaagg atataatatc tgtcaaggag tcagagactt tgtgtgatat agatctgtta 5040 attgatgtgc cattagataa gtatagatat gtgggtattt taggagctgt ttttacaggt 5100 gagtggcttg taccagactt cgtcaaaggt ggagtaacaa taagcgtgat tgacaagcgt 5160 ctggtaaact ccaaagagtg tgtaatcggc acgtatagag cagcggctaa aagcaagagg 5220 ttccagttca agctggttcc aaattacttt gtgtctactg cggacgccaa gaggaaaccg 5280 tggcaggtcc atgtgcgtat tcaggatgtg aagatagaag ccggttggca acccttggct 5340 ctggaagttg tatccgttgc tatggtcgcc aataatgtgg ttatgaaggg tttgagagaa 5400 aagatcatcg cgataagtga tccggacgtc gaaggtttcg aaggagtggt tgacgatttc 5460 gttgattcgg tcgaagcatt tagagcggtt gataatttca ggaaaaagaa aaggaagata 5520 ggagaaaagg aagcggtaag taggaataag tacagaccgg agaaacacgc cggtcctaat 5580 tcgttatata ttaaagaaga aaatgtctta caacatcacg agctcgaatc agtaccagta 5640 cttcgcagcg gtgtgggcag aacccacacc aatgcttaat cagtgcgtgt cggcattgtc 5700 acagtcgttt caaacacaag cggggagaga tactgttaga cagcaattct caaacttgtt 5760 gagtgcgatt gtggcaccga accagcggtt cccagataca gggttccggg tgtatgttaa 5820 ttcggcggtt ataaagccgt tatacgaggc tcttatgaag tcctttgata ctaaaaatag 5880 gatcattgag acggaagagg agtcacgccc gtcagcgtct gaggtagcaa acgcaacaca 5940 gcgtgttgat gatgcgaccg tcgccattag aagtcaaatt cagcttttgc tgaatgagct 6000 ttcaaacgga cacggttata tgaacagagc ggagttcgag gctatattgc cttggactac 6060 gacacctgct acttgagcgt ggtgcgcacg atagcgcgca gtgtttttct ctccacttaa 6120 atcgaagaga taaacttacg gtgtaaatcc gtaggggtga cgtaaaccaa attacgtaat 6180 gttttgggtt ccatttaaat cgaaacccca tatttcctgg atcacctgtt aacgcacgtc 6240 ggacgtgtat tacagtggga atatgtaaaa gtgagaggtt cgaatcctcc ctaaccccgg 6300 gtaggggccc a 6311 //