ID HQ667978; SV 1; linear; genomic RNA; STD; VRL; 6311 BP. XX AC HQ667978; XX DT 27-JUN-2011 (Rel. 109, Created) DT 22-JUL-2012 (Rel. 113, Last updated, Version 3) XX DE Ribgrass mosaic virus strain NZ-439 isolate TP9-186-L9, complete genome. XX KW . XX OS Ribgrass mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6311 RX DOI; 10.1007/s00705-012-1292-0. RX PUBMED; 22456910. RA Chavan R.R., Cohen D., Blouin A.G., Pearson M.N.; RT "Characterization of the complete genome of ribgrass mosaic virus isolated RT from Plantago major L. from New Zealand and Actinidia spp. from China"; RL Arch. Virol. 157(7):1253-1260(2012). XX RN [2] RP 1-6311 RA Chavan R.R., Pearson M.N.; RT ; RL Submitted (30-NOV-2010) to the INSDC. RL School of Biological Sciences, The University of Auckland, Thomas Building, RL Private Bag 92019, Symonds Street, Auckland, North Island 1142, New Zealand XX DR MD5; 3a2b1bf968909e4310363da52af670e4. DR EuropePMC; PMC4758180; 26891841. DR RFAM; RF00225; IRES_Tobamo. DR RFAM; RF01072; TMV_UPD-PK3. XX FH Key Location/Qualifiers FH FT source 1..6311 FT /organism="Ribgrass mosaic virus" FT /host="Plantago major" FT /lab_host="Nicotiana occidentalis" FT /strain="NZ-439" FT /isolate="TP9-186-L9" FT /mol_type="genomic RNA" FT /country="New Zealand" FT /collected_by="D. Cohen and A.G. Blouin" FT /collection_date="22-Dec-2009" FT /db_xref="taxon:51680" FT 5'UTR 1..67 FT CDS 68..4873 FT /codon_start=1 FT /transl_except=(pos:3389..3391,aa:Tyr) FT /product="replicase readthrough component" FT /note="RNA replicase; contains RNA polymerase; translated FT by readthrough" FT /db_xref="GOA:F8SRF2" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:F8SRF2" FT /protein_id="AEI69657.1" FT /translation="MAQFQQTVHMQTLQAAAGRNSLVNDLASRHVYDNAVEELNARSRR FT PKVHFSKAVSTEQTLIATNAYPEFEISFTHTQSAVHSLAGGLRSLELEYLMMQVPFGSL FT TYDIGGNFAAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAVQSYISRLERQRRPVPGYQ FT RAAFNNYAENPRFVHCDRPFQQCELTTANGTDTYAVALHSIYDIPVEEFGSALLRKNVK FT TCFAAFHFHENMLLDCDTVTLDEIGATFQRAGDKLSFFFHNESTLNYTHSFNNIIKYVC FT KTFFPASQRFVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYHNNVDCEEFYKAMDDAWE FT YKKTLAMLNAERTIFKDNAALNFWFPKVRDMVIVPLFDASITSGKMSRREVMVNKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLIT FT KLGHVQDEIILEKFQKFDRSTKELIWTSLCDALVGVIPSVKETLVRGGFVKVAEEALEI FT KIPELYCTFSDRLVLQYKRAEEFQSCDLSKPLEESEKYYNALSELSVLENLDSFDLEAF FT KTLCQQKSVDPDMAAKVVVAIMKCELTLPFKKPTEEEISESLKTEEGSSAEHKEVLSLQ FT NDAPFPCVKNLVEGSVPAYGMCPKGGGFDKLDVDIADFHLKSVDAVKRGTMMSAVYTGS FT IKVQQMKNYIDYLSASLSATVSNLCKVLRDVHGVDPESQEKSGVWDVRRGRWLLKPNAK FT SHAWGVAEDANHKLVIVLLNWDDGKPVCDETWFRVAVSSDSLIYSDMGKLKTLTSCSPN FT GEPPEPNAKVILVGGVPGCGKTKEIIEKVNFSEDLILVPGKEASKMIIRRANHAGVMRA FT DKDNVRTVDSFLMHPPRRVFKRLFIDEGLMLHTGCVNFLLLLSHCDVAYVYGDTQQIPF FT ICRVANFPYPAHFARLAVDEKEVRRTTLRCPADVTFFLNKKYDGAVMCTSAVERSVKAE FT VVRGKGAFNPITLPLEGKILTFTQADKFELLEKGYADVNTVHEVQGETYEKTAIVRLTS FT TPLEIISRASPHVLVALTRHTTRCRYYTVVLDPMVNVISEMEKLSNFILDMYKVEAGIQ FT YQLQIDAVFKGTNLFVQTPKSGDWRDMQFYYDTLLPGNSTILNEFDAVTMNLRDISLNV FT KDCRIDFSKSVQIPKEQPSFLKPKIRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTID FT IEDTASLVAEKFWDAYIDKEFSGTNKMSLTRESFSRWLSKQESSTVGQLADFNFVDLPA FT VDEYKHMIKSQPKQKLDLSIQDEYPALQTIVYHSKKINAIFGPMFAELTRMLLERVDSS FT KFLFYTRKTPGQIEEFFSDLDSTQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDE FT WLAEVWKQGHRKTTLKDYTAGIKTCLWYQRKSGDVSTFIGNTIIIATCLSSMIPMDKVI FT KAAFCGDDSLVYIPKGMDLPDIQAGANLMWNFEAKLFRKKYGYFCGRYVIHHDRGAIVY FT YDPLKLISKLGCKHIRDVVHLEELRESLCDVTSNLNNCAYFLQLDEAVAEVHKTAVGGS FT FAFCSIVKYLSDKRLFKDLFFV" FT CDS 68..3391 FT /codon_start=1 FT /product="RNA replicase component" FT /note="contains capping methyltransferase and RNA helicase FT domains" FT /db_xref="GOA:F8SRF3" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:F8SRF3" FT /protein_id="AEI69656.1" FT /translation="MAQFQQTVHMQTLQAAAGRNSLVNDLASRHVYDNAVEELNARSRR FT PKVHFSKAVSTEQTLIATNAYPEFEISFTHTQSAVHSLAGGLRSLELEYLMMQVPFGSL FT TYDIGGNFAAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAVQSYISRLERQRRPVPGYQ FT RAAFNNYAENPRFVHCDRPFQQCELTTANGTDTYAVALHSIYDIPVEEFGSALLRKNVK FT TCFAAFHFHENMLLDCDTVTLDEIGATFQRAGDKLSFFFHNESTLNYTHSFNNIIKYVC FT KTFFPASQRFVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYHNNVDCEEFYKAMDDAWE FT YKKTLAMLNAERTIFKDNAALNFWFPKVRDMVIVPLFDASITSGKMSRREVMVNKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLIT FT KLGHVQDEIILEKFQKFDRSTKELIWTSLCDALVGVIPSVKETLVRGGFVKVAEEALEI FT KIPELYCTFSDRLVLQYKRAEEFQSCDLSKPLEESEKYYNALSELSVLENLDSFDLEAF FT KTLCQQKSVDPDMAAKVVVAIMKCELTLPFKKPTEEEISESLKTEEGSSAEHKEVLSLQ FT NDAPFPCVKNLVEGSVPAYGMCPKGGGFDKLDVDIADFHLKSVDAVKRGTMMSAVYTGS FT IKVQQMKNYIDYLSASLSATVSNLCKVLRDVHGVDPESQEKSGVWDVRRGRWLLKPNAK FT SHAWGVAEDANHKLVIVLLNWDDGKPVCDETWFRVAVSSDSLIYSDMGKLKTLTSCSPN FT GEPPEPNAKVILVGGVPGCGKTKEIIEKVNFSEDLILVPGKEASKMIIRRANHAGVMRA FT DKDNVRTVDSFLMHPPRRVFKRLFIDEGLMLHTGCVNFLLLLSHCDVAYVYGDTQQIPF FT ICRVANFPYPAHFARLAVDEKEVRRTTLRCPADVTFFLNKKYDGAVMCTSAVERSVKAE FT VVRGKGAFNPITLPLEGKILTFTQADKFELLEKGYADVNTVHEVQGETYEKTAIVRLTS FT TPLEIISRASPHVLVALTRHTTRCRYYTVVLDPMVNVISEMEKLSNFILDMYKVEAGIQ FT " FT CDS 4876..5679 FT /codon_start=1 FT /product="movement protein" FT /note="intercellular transport of virus" FT /db_xref="GOA:F8SRF4" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:F8SRF4" FT /protein_id="AEI69658.1" FT /translation="MSMVSYEPKVNDFLFLTNKEKILPKALTRLKTVSISTKDIISVKE FT SETLCDIDLLIDVPLDKYRYVGILGAVFTGEWLVPDFVKGGVTISVIDKRLVNSKECVI FT GTYRAAAKSKRFQFKLVPNYFVSTADAKRKPWQVHVRIQDVKIEAGWQPLALEVVSVAM FT VANNVVMKGLREKIIAISDPDVEGFEGVVDDFVDSVEAFKAVDNFRKKKRKIGEKEVVS FT RNKYRPEKHAGPNSLYIKEENVLQHHELESVPVLRSGVGRTHTNA" FT CDS 5603..6076 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:F5A0S2" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:F5A0S2" FT /protein_id="AEI69659.1" FT /translation="MSYNITSSNQYQYFAAVWAEPTPMLNQCVSALSQSFQTQAGRDTV FT RQQFSNLLSAIVAPNQRFPDTGFRVYVNSAVIKPLYEALMKSFDTKNRIIETEEESRPS FT ASEVANATQRVDDATVAIRSQIQLLLNELSNGHGYMNRAEFEAIVPWTTAPAT" XX SQ Sequence 6311 BP; 1829 A; 1180 C; 1581 G; 1721 T; 0 other; gtttagtttt attgcaacaa caacaacaaa atacaataac aacaaacaaa atacaaacaa 60 caacaacatg gcacaatttc aacaaacagt tcacatgcaa actctccaag ctgctgcggg 120 acgcaacagt ttggtgaatg atttggcttc tcgtcatgtg tatgacaacg cggttgagga 180 gctgaatgct cgttccaggc gtcccaaagt tcatttctcc aaagcagtgt ctacggaaca 240 gaccctgatt gctacaaatg cttatccgga gtttgagatc tctttcactc acacgcaatc 300 tgcggtgcat tctttggccg gaggccttag atcgctagag ctggagtatc tcatgatgca 360 agttccattt ggatctctga cgtatgatat cggcggtaac tttgctgcgc acctgttcaa 420 agggcgcgat tacgtgcact gctgtatgcc taatctagat gtgcgtgata ttgctcgtca 480 cgagggacac aaggaagccg ttcaaagtta cattagtcgc ctcgaaaggc agcggcgacc 540 tgttccagga tatcagaggg cagctttcaa caactacgcg gagaatccac ggttcgttca 600 ttgcgaccgt ccatttcaac agtgtgaatt gacgacagca aacggtactg atacctacgc 660 tgtagcgctt catagtatat atgatatccc tgttgaagag tttggttcag cgcttctcag 720 gaagaacgtt aagacttgtt tcgcagcttt ccactttcac gagaatatgc ttctcgattg 780 tgacactgtt acactcgacg aaatcggggc aactttccag agagcaggcg ataaactaag 840 ttttttcttt cacaatgaga gcactcttaa ttatacccat agctttaata atataataaa 900 atatgtctgt aaaacgtttt ttcccgctag tcaacgattc gtgtatcata aggagttctt 960 agttactaga gtcaatactt ggtattgtaa gtttactaga gtagatactt ttactctttt 1020 ccgtggtgtg tatcataata acgtggactg cgaagagttt tacaaggcta tggacgatgc 1080 gtgggagtac aagaagacgc ttgcgatgct taatgctgaa agaactatct tcaaggataa 1140 cgcagcgtta aacttttggt tcccgaaagt gagagatatg gtcattgttc ctctttttga 1200 cgcatctatt acgtctggaa agatgtctag aagagaggtt atggtgaata aggattttgt 1260 ttatacggtc ctcaaccata taaagacgta ccaagccaaa gctttaactt acgcaaacgt 1320 tttgtccttt gtcgagtcga ttaggtcaag agtcataatt aacggtgtca ctgccaggtc 1380 tgaatgggac acagacaagg cgattctagg tcctttagca atgacatttt tccttataac 1440 aaagttgggt catgtgcagg atgaaataat cctggaaaag ttccagaagt ttgacagatc 1500 taccaaagag ctaatttgga ctagtctctg cgatgccctg gtaggggtta ttccctcggt 1560 caaggagact ctcgttcgtg gtgggtttgt gaaggtggcg gaagaggcct tagagattaa 1620 aatccctgaa ttgtactgca cgttttccga tagattggtg ctacagtata aaagggcgga 1680 agagttccaa tcgtgtgacc tttccaaacc tctagaagaa tctgagaagt actacaatgc 1740 gttatctgag ctgtcagtgc tcgagaatct cgattcattc gatttagagg cgtttaaaac 1800 cttgtgtcag cagaaaagcg tagatccgga tatggctgct aaggtagtgg tggcaattat 1860 gaagtgtgaa ttgacgttgc ctttcaagaa gcctactgaa gaggaaatct cagagtcgct 1920 taagacagaa gaggggtcaa gcgcggagca taaggaagtg ttgagcttac aaaatgacgc 1980 tccattcccg tgtgtgaaaa atttagtaga gggttctgta ccagcatatg gaatgtgtcc 2040 taaaggtggt ggtttcgaca agttggatgt ggacattgcc gattttcatc tcaagagtgt 2100 agatgcagta aaaaggggaa ctatgatgtc agcggtatac acagggtcta ttaaagttca 2160 gcaaatgaag aactacatag actacttaag tgcatcgctg tcagctacag tctcaaacct 2220 ctgcaaggtg cttagagatg ttcatggcgt tgacccagag tcacaagaga aatctggagt 2280 gtgggacgtt agaagaggac gctggttact taaacctaat gctaaaagtc acgcgtgggg 2340 tgtggcagaa gacgccaacc acaagttggt tattgtgttg cttaactggg acgacggaaa 2400 gcctgtttgt gatgaaacat ggttcagggt ggctgtgtca agcgattcct tgatatactc 2460 ggatatgggt aaacttaaga cgcttacgtc ttgcagtcca aatggtgagc caccggaacc 2520 caacgccaaa gtaattttgg tcggtggtgt tcccggttgt ggaaagacga aggagattat 2580 cgaaaaggtg aatttctctg aggacttgat tttagtccct gggaaggagg cttcgaagat 2640 gatcatcaga agggcaaatc acgctggtgt gatgagagca gataaagata acgtgagaac 2700 ggtggattcc tttttaatgc accctccgag gagagtgttt aagaggctat ttatagacga 2760 agggttgatg ctgcacactg gttgtgttaa ctttttgcta ctgctgtcgc attgtgacgt 2820 ggcgtacgta tacggggata cacaacagat tccgtttatc tgtagagtcg cgaatttccc 2880 gtatcccgca cattttgcaa gacttgcggt agacgagaag gaggtcagaa gaaccacgct 2940 gagatgtccc gctgatgtca cgtttttcct gaataagaag tatgacgggg cggtgatgtg 3000 tactagcgcc gttgagagat ctgtgaaggc agaagtggtg agagggaaag gtgcttttaa 3060 cccgataact ttaccgttag agggaaaaat tttaaccttt acacaggctg acaagttcga 3120 gttgctggaa aagggttacg cggatgtgaa cacagtgcat gaagtgcaag gggaaacata 3180 cgagaagact gccattgttc gattgacatc gactccgtta gagatcatat caagagcatc 3240 accgcatgtt ttggtggcgc tgacgagaca cacaacgcgc tgtcggtatt acaccgtagt 3300 gttggatccg atggttaacg tgatttcaga aatggagaag ttgtcgaatt ttatcctcga 3360 tatgtacaag gtcgaagccg gcatccaata gcaattacag atagatgcag tattcaaggg 3420 aacgaatttg ttcgttcaga cacccaagtc aggcgattgg cgagatatgc aattctatta 3480 tgacactctt cttcctggaa acagcactat tctcaatgaa tttgacgctg ttactatgaa 3540 tttgagggat atttccttaa acgttaagga ttgcagaatc gacttctcca aatccgtgca 3600 aattcccaag gaacagccta gttttctcaa gcctaaaata agaaccgcag cagaaatgcc 3660 gagaacagca ggcttacttg aaaatctagt tgctatgatt aaaagaaaca tgaatgcacc 3720 ggatctaact gggacgatag acatagagga tactgcatca ctggtagccg aaaagttttg 3780 ggatgcttac atcgacaaag aattcagtgg aacgaataag atgtccttaa ctagggaaag 3840 tttttctaga tggctctcta aacaagagtc ttctacagtt ggtcagctag cggatttcaa 3900 ctttgtagat ttgccggcag tggatgagta caagcatatg atcaagagcc aacctaagca 3960 gaagttagac ttaagtatcc aggacgaata tcctgcctta cagacaatag tctatcactc 4020 aaaaaagatc aatgctattt tcggtcctat gtttgcggaa cttacgagga tgctgctcga 4080 gagggtagac tcttcgaagt ttctgtttta cacgagaaag acacctgggc agatagaaga 4140 atttttctct gaccttgatt caacccaggc aatggaaatt ctggaactcg acatttcaaa 4200 gtacgacaag tcacaaaacg agtttcattg cgctgtagag tataagatct gggaaaaact 4260 tgggatagac gagtggttag ctgaggtgtg gaagcaggga cacaggaaga cgactttgaa 4320 ggactataca gctggaatca aaacatgtct atggtaccaa aggaaaagtg gtgatgtgtc 4380 aacctttatc ggtaacacta ttatcattgc aacctgtctg agttcgatga ttccaatgga 4440 caaagtgatc aaagcagcct tttgcggtga cgacagttta gtttatatcc ctaaaggaat 4500 ggacttgcct gatattcagg ccggcgcaaa ccttatgtgg aacttcgagg cgaagctttt 4560 caggaaaaag tatggttact tctgtggtcg gtacgttatt caccatgata gaggagcaat 4620 tgtatattac gatccgctca aactaatatc taagttaggt tgtaaacata ttagagatgt 4680 agttcattta gaagagttac gcgagtcttt gtgtgatgta actagtaact taaataattg 4740 tgcgtatttt ttacagttag atgaggccgt tgccgaggtt cataaaaccg cggtaggcgg 4800 atcgtttgct ttttgtagta ttgttaaata tttatcagat aagaggttgt ttaaagattt 4860 gttttttgtt tgataatgtc gatggtttcg tacgaaccaa aggtgaatga tttcctcttt 4920 ctcacgaata aggaaaagat actcccgaag gctctgacga gattgaagac cgtgtctatt 4980 agtactaagg atataatatc tgtcaaggag tctgagactt tgtgtgatat tgatttgtta 5040 attgatgtgc cattagataa gtatagatat gtgggtattt taggagctgt tttcacaggt 5100 gagtggcttg taccagactt tgtcaagggt ggtgtgacaa taagcgtgat agacaagcgt 5160 ctggtgaact ctaaggagtg tgtgatcggt acgtacagag ctgcagccaa aagtaagagg 5220 ttccagttta agctggttcc gaattacttt gtgtctactg ctgacgcgaa aaggaaaccg 5280 tggcaggttc atgtgcgtat tcaagatgta aagatagaag caggttggca accgttggcc 5340 ctggaagtag tatccgttgc tatggtcgcc aataatgtgg ttatgaaggg tttgagagaa 5400 aagatcatcg cgataagtga tccggacgtc gaaggtttcg aaggcgtggt tgacgatttc 5460 gttgattcgg ttgaagcatt taaagcggtt gataatttca ggaaaaagaa aagaaagata 5520 ggagaaaagg aagtggtaag taggaataaa tatagaccgg agaagcacgc cggtccgaat 5580 tcgttatata ttaaagaaga aaatgtctta caacatcacg agctcgaatc agtaccagta 5640 cttcgcagcg gtgtgggcag aacccacacc aatgcttaat cagtgcgtgt cggcattgtc 5700 acagtcgttt cagacacaag cagggagaga cactgttaga cagcaattct caaacttgtt 5760 gagtgcgatt gtggcgccga accagcggtt cccagataca gggttccggg tatatgttaa 5820 ctcggcggtt ataaagccgt tatacgaggc tctgatgaag tcttttgata ctaagaatag 5880 gatcattgag accgaagagg agtcacgccc gtcagcgtct gaggtagcaa acgcaacaca 5940 gcgtgttgat gatgcaaccg tcgccattag aagtcaaatt cagcttctgc tgaatgagct 6000 ttcaaacgga cacggttata tgaacagagc ggagttcgag gctatagtgc cttggactac 6060 ggcacctgct acttaagcgt ggtgtgcacg atagcacaca gtgtttttct ctccacttaa 6120 atcgaagaga tatacttacg gtgtaattcc gcaagggtga cgtaaaccaa attacgtaat 6180 gttttgggtt ccatttaaat cgaaacccca tatttcctgg atcacctgtt aacgcacgtt 6240 ggacgtgtat tacagtggga atatgtaaaa gtgagaggtt cgaatcctcc ctaaccccgg 6300 gtaggggccc a 6311 //