ID HQ663893; SV 1; linear; genomic RNA; STD; VRL; 6419 BP. XX AC HQ663893; XX DT 22-JUN-2011 (Rel. 109, Created) DT 22-JUN-2011 (Rel. 109, Last updated, Version 1) XX DE Pepino mosaic virus isolate SAR01, complete genome. XX KW . XX OS Pepino mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6419 RA Tiberini A., Tomassoli L., Ciuffo M.; RT ; RL Submitted (01-DEC-2010) to the INSDC. RL Virology, CRA PAV Plant Pathology Research Centre, Via C.G. Bertero 22, RL Rome, Italy 00156, Italy XX DR MD5; d1da4da09b98994d1306aed408fff6b4. DR EuropePMC; PMC3356388; 22623984. XX FH Key Location/Qualifiers FH FT source 1..6419 FT /organism="Pepino mosaic virus" FT /host="tomato" FT /strain="Ch2" FT /isolate="SAR01" FT /mol_type="genomic RNA" FT /country="Italy" FT /collection_date="2001" FT /proviral FT /db_xref="taxon:112229" FT 5'UTR 1..85 FT CDS 86..4402 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:F8SR83" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:F8SR83" FT /protein_id="AEI30853.1" FT /translation="MSRVRNTLEKIRDPQVQSSICEAAYQHVRPVLKESLINCPYALND FT YEADTLENLGVTINPHAIQTHTHAAAKVVENRMLEIVGHHLPKDEKVTFIFLKRSKLRY FT MRRAAVHKDVFVNHNIEPKDFFWYNMESTSTSFSVNTRIAYISDSLHFMEPADVTHLFD FT RCHNLKTLMATVVLPVEAIHKQTSLFPAIYSINYNEEGFEYIPGSHGGGAYFHRYETLR FT LAKYSRFIGQDPLTGLRYTITIQMVESLGANHLFLFQRGNFETPLYRTFQKNSFVTFPN FT IFHPQHVNATKPMPRSRAIQLYLYVKSVNKVTQRDIFAKVRQLISTAELELYDPDELTH FT IVNYFAYVSKLSSINDYDNMLKSSFFKKLVAPMQHDWRCMIEFFRGKSDFNQLLTALQW FT KDFSYTIKTEELVISTHTEIGQAICKAATTYKERRQLANLVKQGAVTLADFKEADQHVE FT YTHFDPEFKSTVDPHRSYENAINNLGIEINEDVPESSGTNETLLNNEISLAMSSAEHVQ FT AVQEIESLLSNPEAAPILPPAQVKTWASLASDTSSTKNREIEDIVAKLELQRNEASCSY FT LQPNKELSKTKAADNNLPWNAWIPLLNAHGFKGNQLQYGPDGNLIQPIQDINNSQPRSD FT YPSSLPCELVETLKKIKRAVYAIPISHRRASAYSSDIKNNRTGKLLCNQSKEWKESFAF FT KMQHEDIVKSGVVIHGCGGSGKSQALQNFLRTLGDSNDCCTVVVPTVELRNDWVNKLHK FT LPMEHIKTFEKAMIQPGFPIVIFDDYTKLPPGYIEAYLFHHANTELFILTGDSTQSVYH FT ESNNGAYIASLDEAVAYYANYCGFYLNATHRNVRSLANKLGVYSEKEGHLKITFASHAL FT QKCKVPILVPSQMKKSAMLDIGHKSMTYAGCQGLTAPKVQILLDNHTQHCSDRVLYTCL FT SRAVDSIHFINTGPNNSEFWDKLEATPYLKAFIDVYRDEKTEMLNSKPADDSPTEPEAP FT VTHFPIANGNNLEKLASALPEKFAREIYDKHHGYSNTIQTENPVVQLFQHQQAKDETLF FT WATIEARLSITTPEANLREFFLKKDVGDILFFNYHNAMCLPADPVDFEEKTWEICAAEV FT KNTYLAKPMANLINAASRQSPDFDSNKISLFLKSQWVKKVEKLGAIKSKPGQTIAAFMQ FT QTVMLYGTMARYLMKMRQRFQPKHIFINCETTTDDLNKFVKDGWNFNRTAQTNDFTAFD FT QSQDGAMLQFEVMKAKFFNIPADVIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDANTE FT CSIAYTATRFHIDNTVKQVYAGDDMALDGVVSEKKSFRKLQNLLKLTSKTLYPKQVKGD FT YAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDQLHDYL FT TLDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH" FT CDS 4428..5132 FT /codon_start=1 FT /product="triple gene block protein 1" FT /db_xref="GOA:F8SR84" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:F8SR84" FT /protein_id="AEI30854.1" FT /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA FT YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCPR FT TYIERLRIPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI FT SASEKEVLEFVGDQVETTSSEELAGLEFREVTFYCTTLAGAVQENPAKTFISLTRHTSK FT LTIGELNARSDS" FT CDS 5113..5484 FT /codon_start=1 FT /product="triple gene block protein 2" FT /db_xref="GOA:Q699Z7" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q699Z7" FT /protein_id="AEI30855.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH FT HCYNTHSATQTGQSVPGHH" FT CDS 5336..5584 FT /codon_start=1 FT /product="triple gene block protein 3" FT /db_xref="GOA:Q334E8" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q334E8" FT /protein_id="AEI30856.1" FT /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL" FT CDS 5630..6343 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:C4MMC0" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:C4MMC0" FT /protein_id="AEI30857.1" FT /translation="MENQPTASNPSDAPPTATQAGAQSPADFSNPNTAPSLSDLKKIKY FT VSTVTSVATPAEIEALGKIFIAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" XX SQ Sequence 6419 BP; 2064 A; 1461 C; 1146 G; 1748 T; 0 other; gaaaacaaaa cataacacat aatatcaaaa gtgaccaaac acaacataac cacgtggaaa 60 aacagcgaaa gcactttacc acattatgtc tcgtgttaga aacactttag aaaagattag 120 agacccacaa gtacaatcta gcatttgtga agctgcttac caacatgtta gacctgtgct 180 caaggaatcc ctaatcaact gtccttatgc gctcaatgat tatgaagcag acacccttga 240 gaatttaggt gtcacaataa atccccatgc aatccaaaca catactcatg cggcagctaa 300 agttgtggaa aatagaatgc tcgaaattgt tggacaccac ttgcccaagg acgagaaagt 360 tactttcatt ttcctcaaaa gaagcaaact gagatacatg cgaagagctg ctgtacataa 420 agatgttttt gttaatcaca atatagaacc caaggatttc ttctggtaca acatggaatc 480 tacatctaca agcttctccg tgaacactag gatcgcttac atctccgatt ctctacattt 540 catggaacca gctgatgtga cccacctctt tgaccgttgc cacaatctta aaacactgat 600 ggcgactgtt gttttacctg ttgaagccat ccacaaacaa acatctttat ttccagcgat 660 atactccatt aactacaatg aagaaggttt tgagtatatc cctggttctc atggtggagg 720 ggcatacttt cataggtatg aaacattaag actggctaaa tactctagat tcattggcca 780 ggacccctta actggactcc gatacaccat aaccattcaa atggtggaga gtttaggagc 840 caaccatctt ttcctcttcc aaagaggaaa ctttgaaacg cctttataca ggacgtttca 900 aaaaaatagc tttgtgacct ttcctaacat ctttcatccc caacatgtta atgccacaaa 960 gcccatgcca agatccaggg caattcagct gtatttatat gtcaaatctg tcaataaggt 1020 gacacaaaga gatatctttg cgaaagtaag gcaacttata tctacagctg aacttgaatt 1080 gtatgaccct gatgaactta cacatattgt caattatttc gcatatgtct caaaactaag 1140 ctcaatcaac gactatgaca atatgctcaa atcaagtttt ttcaaaaaac ttgttgcacc 1200 catgcaacat gactggaggt gcatgattga attctttcgg ggaaaaagtg acttcaatca 1260 acttttaact gctcttcaat ggaaagactt ctcttacacc attaaaactg aagagttagt 1320 tatttctaca cacactgaaa ttggccaggc aatctgtaaa gctgcgacca catacaaaga 1380 aagaagacaa ttggccaatt tagtcaaaca aggagcagta acattagctg atttcaaaga 1440 agcggaccag catgtggagt acactcactt tgatcctgag tttaaatcca ctgttgaccc 1500 tcaccggagc tatgaaaatg ccatcaacaa tcttggcatt gagattaatg aggatgtacc 1560 tgaaagttcc ggcactaacg aaacattgct taacaatgaa atatctttag caatgtcatc 1620 tgctgaacat gtgcaagccg ttcaagaaat tgagtcttta ctctctaacc ccgaagcggc 1680 accaatattg ccccctgcac aggttaaaac atgggctagc cttgcatctg acacttccag 1740 cactaaaaac cgtgaaattg aagatatagt ggctaagctg gaactacaaa gaaatgaagc 1800 tagttgcagc taccttcaac caaataagga attgtcaaaa accaaggctg ctgataacaa 1860 tctcccctgg aatgcttgga tcccattgct taatgcacac ggcttcaaag gaaatcaatt 1920 acaatacggc ccagatggca acttgataca gcccatccaa gacattaaca attcacagcc 1980 tagatctgac tatccgtctt ctcttccatg tgaacttgtg gaaactttga agaaaattaa 2040 gcgtgctgtc tatgccatcc caataagcca caggagggct agtgcttaca gttctgacat 2100 caaaaataac agaactggca aacttctctg caaccaaagt aaagaatgga aagaaagctt 2160 tgctttcaaa atgcaacatg aagacattgt aaaatcaggt gttgtcatac atggttgtgg 2220 aggttctggc aaatcccagg cattacaaaa cttcttgaga acattgggtg attcaaatga 2280 ttgctgtact gttgtagtac ccactgttga acttagaaat gactgggtaa ataaactcca 2340 taaattgccc atggagcaca tcaaaacatt tgagaaagca atgattcaac ctggctttcc 2400 aattgttata tttgatgatt acactaagtt gccgcctggc tacattgaag cctacctatt 2460 tcaccatgcc aacactgagc ttttcatact tactggtgat tctacgcaaa gcgtgtatca 2520 tgagtccaac aatggagcgt acattgcctc attagatgaa gctgttgcat actacgctaa 2580 ttactgcggt ttttacttaa atgctactca tagaaatgtc cgtagtttag ccaataaact 2640 tggtgtttac agtgagaaag aaggacactt gaaaatcact ttcgcttcac atgccttaca 2700 aaagtgcaaa gtgccaattc tagttccttc tcaaatgaaa aagagtgcta tgttagacat 2760 tggacataaa tccatgacct atgctggttg ccaaggttta acagcaccca aagtacaaat 2820 tctccttgat aatcacacgc aacattgctc tgacagagtt ctgtacacct gtttgtctcg 2880 tgcagttgat tccatccact tcatcaatac tggtcccaac aattcagaat tttgggataa 2940 gcttgaagca acaccatatc tcaaagcctt cattgatgtc tatagggatg aaaaaactga 3000 aatgctaaat tctaaacctg ctgatgacag tccaactgag cccgaagcac ctgttacaca 3060 tttcccaata gcaaatggaa ataacttaga gaaattagct tctgctttgc ctgaaaaatt 3120 tgctagggag atttatgaca agcatcacgg ctactccaac acaatccaaa ctgagaaccc 3180 tgtggtccaa cttttccaac atcaacaagc gaaagacgag acactcttct gggctacaat 3240 tgaagctaga ttgtccataa caactcctga agcaaacctc agagaatttt ttcttaagaa 3300 agatgttggg gacattctct tcttcaatta ccacaatgcg atgtgcttgc ctgccgaccc 3360 tgttgacttt gaagaaaaga cctgggagat ttgtgctgct gaagtaaaaa acacttatct 3420 tgccaaaccc atggccaatc ttattaatgc agcaagtaga caatcacccg actttgactc 3480 taataagatc tcattattcc taaagtctca atgggtgaaa aaagtggaaa aacttggagc 3540 tatcaaatca aaacctggtc agaccatagc tgcttttatg caacaaacag tcatgttgta 3600 cggtactatg gccaggtact taatgaaaat gcgccaaaga ttccagccaa aacacatatt 3660 catcaattgt gaaaccacaa ctgatgatct caataaattt gtcaaagatg gctggaactt 3720 taacagaacc gcccaaacaa atgacttcac tgcttttgac cagtcacaag atggagcaat 3780 gcttcaattt gaagtcatga aagcaaaatt ttttaacatt ccagctgatg tcattgaagg 3840 ctacatcaac atcaagctga atgctaaaat tttccttgga acactctcaa taatgagact 3900 ttctggtgaa ggtcccacat ttgacgctaa cactgagtgt tcgattgcat acactgccac 3960 aagattccat attgacaata ctgttaagca agtgtatgcc ggtgacgaca tggcattaga 4020 tggagttgtg agtgaaaaga aatcattcag gaagttgcaa aatctactaa aactcacttc 4080 taaaacgctg tacccaaaac aggttaaagg ggattacgct gaattttgcg gttggacatt 4140 cacaccaggg ggtataatta aaaatccact taaaatgcat gcctcaatta tgctgcaaga 4200 agccattggc aatctgcaca cagcagccag atcttatgca atcgacatga agcattcata 4260 ccaaatgggt gaccaactgc acgactacct aaccctcgat gaagctgaac aacatttcct 4320 agctgtgaga aagcttcaca aactccatca aggcgaggcc atgcgtcttg gggagaaaag 4380 tccaccaaga tcaacccatt aaggggttaa gttttcccca gtttgaaatg gaaagatcaa 4440 ctttgattaa tttacttcta ttacacaaat ttgaacacaa gattaacact gaaggaatca 4500 ttgttgtgca cggaattgct ggaactggga aaaccacatt gcttaggact ttattttctg 4560 cataccctag cttagttata ggttcaccta ggccttgtta cttagataaa gctaataaaa 4620 tttcacaagt ttgcctttct tgttttccaa ataccttgtg tgacattgtt gacgagtacc 4680 atctcttaga aagttttcct gaaccaaaac tagccatttt tggtgacccc tgtccccgca 4740 cttacattga aaggttgaga atacccaact acacatcctt cagaacacac cgatttggca 4800 aatccactgc tgctctacta aacaagttat ttgatcttaa cattgagtca gtcaaagcac 4860 aagacgacac agtagaatac tttgatcctt tcgcagtgga cccctctgaa cacatttctg 4920 cttcagaaaa agaagttttg gaatttgtag gtgatcaagt tgagactaca agctctgaag 4980 aactagctgg tctcgagttt agagaagtta ctttctactg taccacactt gctggtgctg 5040 ttcaagaaaa tcctgccaaa accttcattt cactcactag acacacttca aagctcacaa 5100 ttggtgaact aaatgccagg tctgactcct agagctgatc ttactgacac gtacaaaatc 5160 attgctatag cctttctact gtcagcttgc atttacttcc aaaacagtca ttatcaacca 5220 gttgcaggtg ataatttgca cagactaccc ttcggtggtc agtatcaaga cggaactaag 5280 aagatttctt actttccgca gcaacaatcc tactttcact caggaaacaa gcttaatgtc 5340 ctcatactta tcttcattct tacactgggt attgtcctca ccaataaatt tagttttagc 5400 attagccgta atactcacca gcatcattgc tacaacacac attctgcaac ccaaacaggt 5460 caatcagtgc caggtcatca ttgacggtgc agccatagtt ataacaaatt gtccaaacac 5520 acccgaagtt cttaaagcaa tcaacttctc cccttggaac gggttaagtt ttcctcaatt 5580 gtgaaatcat attcattatc tagttaaatt taaacaattt aactcaacta tggaaaacca 5640 acctacagct tctaacccat cagatgcacc accaactgct actcaagctg gtgcccagag 5700 cccagctgac ttctcaaatc ctaatacagc tccttcccta agtgatttga agaagatcaa 5760 atacgtgtca actgtcactt cagttgccac gcctgctgaa attgaggccc ttggcaagat 5820 ctttattgcc atgggtttag cagccaatga gaccggacct gccatgtggg acctcgctcg 5880 tgcttatgct gatgtgcaaa gttcaaaatc tgcacaactt ataggtgcca caccatccaa 5940 ccctgctttg tctagacgtg cacttgctgc acagtttgat cgtatcaata tcacacccag 6000 acaattctgc atgtattttg caaaaattgt ttggaacata ctgttagaca gcaatgtgcc 6060 acctgccaac tgggcaaaat tgggctatca ggaagatacc aagtttgctg cttttgactt 6120 ttttgatgga gtcacaaacc cagctagtct acagcctgca gatggcctaa tcaggcagcc 6180 caatgaaaaa gagcttgctg ctcactcggt tgctaaatat ggtgcccttg cccgccagaa 6240 aatatccact ggtaactaca tcaccaccct tggtgaagtt acacgtggtc acatgggcgg 6300 agccaacact atgtacgcaa ttgatgcacc tcctgaactt taaacactcg aaacttaatc 6360 agagtggggt tttctatagt ttattttccc ttagtatcta aatctactaa ataaaaaaa 6419 //