ID HQ663892; SV 1; linear; genomic RNA; STD; VRL; 6459 BP. XX AC HQ663892; XX DT 22-JUN-2011 (Rel. 109, Created) DT 22-JUN-2011 (Rel. 109, Last updated, Version 1) XX DE Pepino mosaic virus isolate SIC2-09, complete genome. XX KW . XX OS Pepino mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6459 RA Tiberini A., Tomassoli L., Davino S.; RT ; RL Submitted (01-DEC-2010) to the INSDC. RL Virology, CRA PAV Plant Pathology Research Centre, Via C.G. Bertero 22, RL Rome, Italy 00156, Italy XX DR MD5; 48e14ae0758378d5287630175890b7be. DR EuropePMC; PMC3356388; 22623984. XX FH Key Location/Qualifiers FH FT source 1..6459 FT /organism="Pepino mosaic virus" FT /host="tomato" FT /strain="Ch2" FT /isolate="SIC2-09" FT /mol_type="genomic RNA" FT /country="Italy" FT /collection_date="2009" FT /proviral FT /db_xref="taxon:112229" FT 5'UTR 1..85 FT CDS 86..4402 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:F8SR78" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:F8SR78" FT /protein_id="AEI30848.1" FT /translation="MSRVRNTLEKIRDPQVQSSICEAAYQHVRPVLKESLINCPYALND FT YEADTLENLGVTINPHAIQTHTHAAAKVVENRMLEIVGHHLPKDEKVTFIFLKRSKLRY FT MRRAAVHKDVFVNHNIEPKDFFRYDEESTSTSFSVNTRIAYISDSLHFMEPADVTHLFD FT RCHNLKTLMATVVLPFEAIHKQTSLFPAIYSINYNEEGFEYIPGSQGEEGKRSKKETIN FT WVKNSCYSWQDPLTGLRYTITIQMVESLGANHLFLFQRGNFETPLYRTFQKNSFVTFPN FT IFHPQHVNATKPMPRSRAIQLYLYVKSVNKVTQRDIFAKVRQLISTAELELYDPDELTH FT IVNYFAYVSELSSINDYDNMLKSSFFKKLIAPMQHDWRCMIEFFRGKSDFNQLLTALQW FT KDFSYTIKTEELVISTHTEIGQAICKAATTYKERRQLANLVKQGAVTLADFKEADQHVE FT YTHFDPEFKSTVDPHRSYENAINNLGIEINEDVPESSGTNETLLNNEISLAMSPAEHVQ FT AVQEIESLLSNPEAAPILPPAHVKTWASLASDTSSTKNREIEDIVAKLEIQRNEASCSY FT LQPNKELSKLKAADNNLPWNAWIPLLNAHGFKGDQLQYGPDGNLIQPIQDINNSQPRSD FT YPSSLPCELVETLRKIKRAVYAIPISHRRASAYSSDIKNNRTGKLLCNQSKEWKESFAF FT KMQHEDIVKSGVVIHGCGGSGKSQALQNFLRTLGDSNDCCTVVVPTVELRNDWVNKLHK FT LPMEHIKTFEKAMIQPGFPIVIFDDYTKLPPGYIEAYLFHHANTELFILTGDSRQSVYH FT ESNNGDNIASLDEAVAYYANYCGFYLNATHRNVRSLANKLGVYSEKEGHLKITFASHAL FT QKCKVPILVPSQMKKSAMLDIGHKSMTYAGCQGLTAPKVQILLDNHTQHCSDRVLYTCL FT SRAVDSIHFINTGPNNSEFWDKLEATPYLKAFIDVYRDEKTEMLNSKPADDSPTEPEAP FT VTHFPIANGNNLEKLASALPEKFAREIYDKHHGYSNTIQTENPVVQLFQHQQAKDETLF FT WATIEARLSITTPEANLREFLLKKDVGDILFFNYHNAMCLPAGPVDFEEKTWEICAAEV FT KNTYLAKPMADLINAASRQSPDFDSNKISLFLKSQWVKKVEKLGAIKSKPGQTIAAFMQ FT QTVMLYGTMARYLRKMRQRFQPKHIFINCETTTDDLNKFVKNGWNFNRTAQTNDFTAFD FT QSQDGAMLQFEVMKAKFFNIPADVIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDANTE FT CSIAYTATRFHIDNTVKQVYAGDDMALDGVVSEKKSFRKLQNLLKLTSKTLYPKQVKGD FT YAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARYQVLDMKHSYQMGDQLHDYL FT TLDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH" FT CDS 4428..5132 FT /codon_start=1 FT /product="triple gene block protein 1" FT /db_xref="GOA:F8SR79" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:F8SR79" FT /protein_id="AEI30849.1" FT /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLYSA FT YPSLVIGSPRPCYLNKANKILQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCHP FT TYIERLRIPNYTSFRTHRFGKSTAALLNKLFDLNIESVRAQDDTVEYFDPFAVDPSEHI FT SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK FT LTIGELNARSDS" FT CDS 5113..5484 FT /codon_start=1 FT /product="triple gene block protein 2" FT /db_xref="GOA:F8SR80" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:F8SR80" FT /protein_id="AEI30850.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVFTNKFSFSISRNTHQH FT HCYNTHSATQTGQSVPGHH" FT CDS 5336..5584 FT /codon_start=1 FT /product="triple gene block protein 3" FT /db_xref="GOA:Q334E8" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q334E8" FT /protein_id="AEI30851.1" FT /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL" FT CDS 5630..6343 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q699Z5" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q699Z5" FT /protein_id="AEI30852.1" FT /translation="MENQPTASNPSDAPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" FT 3'UTR 6344..6419 XX SQ Sequence 6459 BP; 2083 A; 1475 C; 1155 G; 1746 T; 0 other; gaaaacaaaa cataacacat aatatcaaaa gtgaccaaac acaacataac cacgtggaaa 60 aacagcgaaa gcactttacc acattatgtc tcgtgttaga aacactttag aaaagatcag 120 agacccacaa gtacaatcta gcatttgtga agctgcttac caacatgtta gacctgtgct 180 caaggaatct ctaatcaact gtccttatgc gctcaatgac tatgaagcag acacccttga 240 gaatttaggt gtcacaataa atccccatgc aatccaaaca catactcatg cggcagctaa 300 agttgtggaa aatagaatgc tcgaaattgt tggacaccac ttgcccaagg acgagaaagt 360 taccttcatt ttcctcaaaa gaagcaaact gagatacatg agaagagctg ccgtacataa 420 agatgttttt gttaatcaca acatagaacc caaggatttc ttcaggtatg acgaggaatc 480 tacatctact agcttctccg tgaacactag gatcgcttac atctccgatt ctctacactt 540 catggaacca gctgatgtga cccacctctt cgaccgttgc cacaatctta aaacactgat 600 ggcaactgtt gttttaccgt ttgaagccat acacaaacaa acatctttat ttccagcgat 660 atactccatt aactacaatg aagaaggttt tgagtacatc cctggttctc agggggaaga 720 gggcaaacgt tcaaaaaaag aaacaataaa ctgggtgaaa aactcttgtt actcttggca 780 ggacccctta actggactcc gatacaccat aaccattcaa atggtggaga gtttaggagc 840 caaccatctt ttccttttcc aaagaggaaa ctttgaaacg cctttataca ggacgtttca 900 aaaaaatagc tttgtgacct ttcctaacat cttccatccc caacatgtta atgccacaaa 960 gcctatgcca agatccaggg caattcagct gtatttatat gtcaaatccg tcaataaggt 1020 gacacaaaga gatatctttg cgaaagtaag gcaacttata tctacagctg aacttgaatt 1080 gtatgaccct gatgaactta cacatattgt caattatttc gcatatgtct cagaactaag 1140 ctcaatcaac gactatgaca atatgctcaa atcaagtttt ttcaaaaaac ttattgcacc 1200 catgcaacat gactggaggt gcatgattga attctttcgg ggaaaaagtg atttcaatca 1260 acttttaact gctcttcaat ggaaagactt ctcttacacc attaaaactg aagagttagt 1320 tatttctaca cacactgaaa ttggccaggc aatctgtaaa gctgcgacca catacaaaga 1380 aagaagacaa ttggccaatt tagtcaaaca aggcgcagta acattagctg atttcaaaga 1440 agcggaccag catgtggagt acactcactt tgatcctgag tttaaatcca ctgttgaccc 1500 tcaccggagc tatgaaaatg ccatcaacaa tcttggcatt gagattaatg aggacgtacc 1560 tgaaagttcc ggcactaatg aaacattgct taacaatgaa atatctttag caatgtcacc 1620 tgctgaacat gtgcaagctg ttcaagaaat tgagtcttta ctctctaacc ccgaagcggc 1680 accaatattg ccccctgcac atgttaaaac atgggctagc cttgcatctg acacttccag 1740 tactaaaaac cgtgaaattg aagatatagt ggctaagctc gaaatacaaa gaaatgaagc 1800 tagttgcagc taccttcaac caaataagga attgtctaaa ctcaaggctg ctgataacaa 1860 tctcccctgg aatgcttgga tcccattgct taatgcacac ggcttcaaag gagatcaatt 1920 acaatacggc ccagatggca acctgataca gcccatccaa gacattaaca attcacagcc 1980 tagatctgac tatccgtctt ctctgccatg tgaacttgtg gaaactttga ggaaaattaa 2040 gcgtgctgtc tatgccatcc caataagcca caggagggct agtgcttaca gttctgacat 2100 caaaaataac agaactggca aacttctctg caaccaaagc aaagaatgga aagaaagctt 2160 tgctttcaaa atgcaacatg aagacatcgt caaatcaggt gttgtcatac atggctgcgg 2220 aggttctggc aaatcccagg cattacaaaa cttcttgaga acattgggtg attcaaatga 2280 ttgctgtact gttgtagtac ccactgttga acttagaaat gactgggtaa ataaactcca 2340 taaattgccc atggagcaca tcaaaacatt tgagaaagca atgattcaac ctggctttcc 2400 aattgttata tttgacgatt acaccaagtt gccacctggc tacattgaag cctacctatt 2460 tcaccatgcc aacactgagc ttttcatact tactggtgat tctaggcaaa gcgtgtatca 2520 tgagtccaac aatggagaca acattgcctc attagatgaa gctgttgcat actacgctaa 2580 ttactgcggt ttttacttaa atgctactca tagaaatgtc cgtagtttag ccaataaact 2640 tggtgtttac agtgagaaag aaggacactt gaaaatcact ttcgcttcac atgccttaca 2700 aaagtgcaaa gtgccaattc tagttccttc tcaaatgaaa aagagtgcta tgttagacat 2760 tggacataaa tccatgacct atgctggttg ccaaggttta acagcaccca aagtacaaat 2820 tctccttgat aatcacacgc aacattgctc tgacagagtt ctgtacacct gtttgtctcg 2880 tgcagttgat tccatccact tcatcaatac tggtcccaac aattcagaat tttgggataa 2940 gcttgaagca acaccatatc tcaaagcctt cattgatgtc tatagagatg aaaaaactga 3000 aatgctcaat tctaagcctg ctgatgatag tccaactgag cctgaagcac ctgttacaca 3060 tttcccaata gcaaatggaa ataacttaga gaaattagct tctgctttgc ctgaaaaatt 3120 tgctagggag atttatgaca agcatcacgg ctactccaac acaatccaaa ctgagaaccc 3180 tgtggtccaa cttttccaac atcaacaagc gaaagacgag acactcttct gggctacaat 3240 tgaagctaga ttatccataa caactcccga agcaaacctc agagaatttt tgcttaagaa 3300 agatgttggg gacattctct tcttcaatta ccacaatgcg atgtgcttgc ccgccggccc 3360 tgttgacttt gaagaaaaaa cctgggagat ttgtgctgct gaagtgaaaa acacttatct 3420 tgccaaaccc atggctgatc ttattaatgc ggcaagtaga caatcacccg actttgactc 3480 taataagatc tcattatttc taaagtctca atgggtgaaa aaagtggaaa aacttggagc 3540 tatcaaatca aaacctggtc agaccatagc tgcttttatg caacaaaccg tcatgttgta 3600 tggtactatg gccaggtact taaggaaaat gcggcaaaga ttccagccaa aacacatatt 3660 catcaattgt gaaaccacaa ccgatgatct caataaattt gtcaaaaatg gctggaactt 3720 taacagaacg gcccaaacaa atgacttcac tgcttttgac cagtcacaag atggagcaat 3780 gcttcaattt gaagtcatga aagcaaaatt ttttaacatt ccagctgatg tcattgaagg 3840 ctacatcaac atcaagctga atgctaaaat tttccttgga acactctcaa taatgagact 3900 ttctggtgaa ggtcccacat ttgacgctaa cactgagtgt tcgattgcat acactgccac 3960 aagattccat attgacaata ctgttaagca agtgtatgcc ggtgacgaca tggcattaga 4020 tggcgttgtg agtgaaaaga aatcattcag gaagttgcaa aatctactaa aactcacttc 4080 taaaacgctg tacccaaaac aggttaaagg ggattacgct gaattttgtg gttggacatt 4140 tacaccaggg ggtataatta aaaatccact taaaatgcat gcctcaatta tgctgcaaga 4200 agccattggc aatctgcaca cagcagccag atatcaagta ctcgacatga agcattcata 4260 ccaaatgggt gaccaactgc acgactacct aaccctcgat gaagctgaac aacatttcct 4320 agctgtgaga aagcttcaca aactccatca aggcgaggcc atgcgtcttg gggagaaaag 4380 tccaccaaga tcaacccatt aaggggttaa gttttcccca gtttgaaatg gaaagatcaa 4440 ctttgattaa tttacttctg ttacacaaat ttgaacacaa gattaacact gaaggaatca 4500 ttgttgtgca cggaattgct ggaactggga aaaccacatt gcttaggact ttatattctg 4560 cataccctag cttagttata ggttcaccta ggccttgtta cttaaataaa gctaataaaa 4620 ttttacaagt ttgcctttcc tgttttccaa ataccttgtg tgacattgtt gacgagtacc 4680 atctcttaga aagttttcct gaaccaaaac tagccatttt tggtgacccc tgtcacccca 4740 cttacattga aagattgaga atacccaact acacatcctt cagaacacac cgatttggca 4800 aatccactgc tgctctacta aacaagttat ttgatcttaa cattgagtca gtcagagcac 4860 aagacgacac agtagaatac tttgatcctt ttgcagtgga cccctctgaa cacatttctg 4920 cttcagaaaa agaggttttg gaatttgtag gtgatcaagt tgagactaca agctctgaag 4980 aactagctgg tctcgagttt agtgaagtta ctttctactg taccacactt gctggtgctg 5040 ttcaagaaaa tcctgccaaa accttcattt cactcactag acacacttca aagctcacaa 5100 ttggtgaact aaatgccagg tctgactcct agagccgatc ttactgacac gtacaaaatc 5160 attgctatag cctttctact gtcagcttgc atttacttcc aaaacagtca ttatcaacca 5220 gttgcaggtg ataatttgca cagactaccc ttcggtggtc agtatcaaga cggaactaag 5280 aagatttctt actttccgca gcaacaatcc tactttcact caggaaacaa gcttaatgtc 5340 ctcatactta tcttcattct tacactgggt attgtcttca ccaataaatt tagttttagc 5400 attagccgta atactcacca gcatcattgc tacaacacac attctgcaac ccaaacaggt 5460 caatcagtgc caggtcatca ttgacggtgc agccatagtt ataacaaatt gtccaaacac 5520 acccgaagtt cttaaagcaa tcaacttctc cccttggaac gggttaagtt ttcctcaatt 5580 gtgaaatcat atttgttatc tagttaaatt tcaacaattt aactcaacta tggaaaacca 5640 acctacagct tctaacccat cagatgcacc accaactgct gctcaagctg gtgcccagag 5700 cccagccgac ttctcaaatc ctaatacagc tccttcccta agtgatttga agaagatcaa 5760 atacgtgtca actgtcactt cagttgccac gcctgctgaa attgaggccc ttggcaagat 5820 ctttactgcc atgggtttag cagccaatga gaccggacct gccatgtggg atctcgctcg 5880 tgcttatgct gatgtgcaaa gttcaaaatc tgcacaactt ataggtgcca caccatccaa 5940 ccctgctttg tctagacgtg cacttgctgc acagtttgat cgtatcaata tcacacccag 6000 acaattctgc atgtattttg caaaaattgt ctggaacata ctgttagaca gcaatgtgcc 6060 acctgccaac tgggcaaaat tgggctatca ggaagatacc aagtttgctg cttttgactt 6120 ctttgatgga gtcacaaacc cagctagtct acagcctgca gatggcttaa tcaggcagcc 6180 caatgaaaaa gagcttgctg ctcactcggt tgctaaatat ggtgcccttg cccgccagaa 6240 aatatccact ggcaactaca tcaccaccct tggtgaagtt acacgtggtc acatgggcgg 6300 agccaacact atgtacgcaa ttgatgcacc tcctgaactt taaacactca aaacttaatc 6360 agagtggggt tttctatagt ttattttccc ttagtatcta aatctactaa ataaaaaaat 6420 ttattttccc ttagtatcta aatctactaa ataaaaaaa 6459 //