ID HQ663891; SV 1; linear; genomic RNA; STD; VRL; 6412 BP. XX AC HQ663891; XX DT 22-JUN-2011 (Rel. 109, Created) DT 22-JUN-2011 (Rel. 109, Last updated, Version 1) XX DE Pepino mosaic virus isolate SIC1-09, complete genome. XX KW . XX OS Pepino mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6412 RA Tiberini A., Tomassoli L., Davino S.; RT ; RL Submitted (01-DEC-2010) to the INSDC. RL Virology, CRA PAV Plant Pathology Research Centre, Via C.G. Bertero 22, RL Rome, Italy 00156, Italy XX DR MD5; eded0215ffc4c388f1e57bfdc4030d19. DR EuropePMC; PMC3356388; 22623984. XX FH Key Location/Qualifiers FH FT source 1..6412 FT /organism="Pepino mosaic virus" FT /host="tomato" FT /strain="Ch2" FT /isolate="SIC1-09" FT /mol_type="genomic RNA" FT /country="Italy" FT /collection_date="2009" FT /proviral FT /db_xref="taxon:112229" FT 5'UTR 1..85 FT CDS 86..4402 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:F8SR73" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:F8SR73" FT /protein_id="AEI30843.1" FT /translation="MSRVRNTLEKIRDPQVQSSICEAAYQHVRPVLKESLIYCPYALND FT YEADTLENLCVTINPHAIQTHTHAAAKVVENRMLEIVGHHLPKDEKVTFIFLKRSKLRY FT MRRAAVHKDVFVNQNIEPRDFFRYDEESTSTIFSVNTRIAYISDSLHFMEPADVTHLFH FT RCHNLKTLMATVVLRVEAIHKQTSLFPAIYSINYNEEGFEYIPGSHGGGAYFHKYESMN FT LSAHIHAVDSESLTGLRYTITIQMGESLGANHLFLFQKGNFETPLYRTFQKNSFVTFPN FT IFHPQHVNATKPMPRSRAIQLYLYVKSVNKVTQRDIFAKVRQLISTAELELYDPDELTH FT IVNYFAYVSKLSSINDYDNMLKSSFFKKLIAPMQHDWRCMIEFFRGKSDFNQLLTALQW FT KDFSYTIKTEELFISTHTEIGQAICKAATTYKERRQLANLVKQGAVTLADFKEADQHVE FT YTHFDPEFKSTVDPHRSYENAINNLGIEINEDVPESSGTNETLLNNEISLAMSPAEHVQ FT AVQEIESLLSNPEAAPILPPAHVKTWASLASDTSSTKNREIEDIVAKLEIQRNEASCSY FT LQPNKELSKLKAADNNLPWNAWIPLLNAHGFKGDQLQYGPDGNLIQPIQDINNSQPRSD FT YPSSLPCELVEALRKIKRAVYAIPISHRRASAYSSDIKNNRTGKLLCNQSKEWKESFAF FT KMQHEDIVKSGVVIHGCGGSGKSQALQNFLRTLGDSNDCCTVVVPTVELRNDWVNKLHK FT LPMEHIKTFEKAMIQPGFPIVIFDDYTKLPPGYIEAYLFHHANTELFILTGDSRQSVYH FT ESNNEAYIAALDEAVAYYANYCGFYLNATHRNVRSLANKLGVYSEKEGHLKITFASHAL FT QKCKVPILVPSQMKKSAMLDIGHKSMTYAGCQGLTAPKVQILLDNHTQHCSDRVLYTCL FT SRAVDSIHFINTGPNNSEFWDKLEATPYLKAFIDVYRDEKTEMLNSKPADDSPTEPEAP FT VTHFPIANGNNLEKLASALPGKFAREIYDKHHGYSNTIQTENPVVQLFQHQQAKDETLF FT WATIEARLSITTPEANLREFLLKKDVGDILFFNYHNAMCLPADPVDFEEKTWEICAAEV FT KNTYLAKPMANLINAASRQSPDFDSNKISLFLKSQWVKKVEKLGAIKSKPGQTIAAFMQ FT QTVMLYGTMARYLRKMRQRFQPKHIFINCETTTDDLNKFVKDGWNFNRTAQTNDFTAFD FT QSQDGAMLQFEVMKAKFFNIPADVIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDANTE FT CSIAYTATRFHIDNTVKQVYAGDDMALDGVVSEKKSFRKLQNLLKLTSKTLYPKQVKGD FT YAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDQLAGIL FT TLGEPELHFLAVRKLHKLHQGEAMRLGEKSPPRSTH" FT CDS 4428..5132 FT /codon_start=1 FT /product="triple gene block protein 1" FT /db_xref="GOA:F8SR74" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:F8SR74" FT /protein_id="AEI30844.1" FT /translation="MERTTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLYSA FT YPSLVIGSPRPCYLDKANKILQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC FT TYIERLRIPNYTSFRTHRFGKSTAALLNKLFDLNIESVQAQDDTVEYFDPFAVDPSEHI FT SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK FT LTIGELNARSDS" FT CDS 5113..5484 FT /codon_start=1 FT /product="triple gene block protein 2" FT /db_xref="GOA:F8SR80" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:F8SR80" FT /protein_id="AEI30845.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVFTNKFSFSISRNTHQH FT HCYNTHSATQTGQSVPGHH" FT CDS 5336..5584 FT /codon_start=1 FT /product="triple gene block protein 3" FT /db_xref="GOA:Q334E8" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q334E8" FT /protein_id="AEI30846.1" FT /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL" FT CDS 5630..6343 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q699Z5" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q699Z5" FT /protein_id="AEI30847.1" FT /translation="MENQPTASNPSDAPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" FT 3'UTR 6344..6412 XX SQ Sequence 6412 BP; 2049 A; 1468 C; 1157 G; 1738 T; 0 other; gaaaacaaaa cataacacat aatatcaaaa gtgaccaaac acaacataac cacgtggaaa 60 aacagcgaaa gcactttact acagtatgtc tcgtgttaga aacactttag aaaagatcag 120 agacccacaa gtacaatcta gcatttgtga agctgcttac caacatgtta gacctgtgct 180 caaggaatct ctaatctact gtccttatgc gctcaatgac tatgaagcag acacccttga 240 gaatttatgt gtcacaataa atccccatgc aatccaaaca catactcatg cggcagctaa 300 agttgtggaa aatagaatgc tcgaaattgt tggacaccac ttgcccaagg acgagaaagt 360 aaccttcatt ttcctcaaaa gaagcaaact gagatacatg agaagagctg ccgtacataa 420 agatgttttt gttaatcaaa acatagaacc cagggatttc ttcaggtatg acgaggaatc 480 tacatctact atcttctccg tgaacactag gatcgcttac atctccgatt ctctacactt 540 catggaacca gctgatgtga cccacctctt ccaccgttgc cacaatctta aaacactgat 600 ggcaactgtt gttttacgcg ttgaagccat acacaaacaa acatctttat ttccagcgat 660 atactccatt aactacaatg aagaaggttt tgagtatatc cctggttctc atggtggagg 720 ggcatacttt cataagtatg aaagtatgaa cttatctgct catatacatg ctgtggactc 780 ggaatcctta actggactcc gatacaccat aaccattcaa atgggggaga gtttaggagc 840 caaccatctt ttcctcttcc aaaaaggaaa ctttgaaacg cctttataca ggacgtttca 900 aaaaaatagc tttgtgacct ttcctaacat cttccatccc caacatgtta atgccacaaa 960 gcctatgcca agatccaggg caattcagct gtatttatat gtcaaatccg tcaataaggt 1020 gacacaaaga gatatctttg cgaaagtaag gcaacttata tctacagctg aacttgaatt 1080 gtatgaccct gatgaactta cacatattgt caattatttc gcatatgtct caaaactaag 1140 ctcaatcaac gactatgaca atatgctcaa atcaagtttt ttcaaaaaac tcattgcacc 1200 catgcaacat gactggaggt gcatgattga attctttcgg ggaaaaagtg atttcaatca 1260 acttttaact gctcttcaat ggaaagactt ctcttacacc attaaaactg aagagttatt 1320 tatttctaca cacactgaaa ttggccaggc aatctgtaaa gctgcgacca catacaaaga 1380 aagaagacaa ttggccaatt tagtcaaaca aggcgcagta acattagctg atttcaaaga 1440 agcggaccag catgtggagt acactcactt tgatcctgag tttaaatcca ctgttgaccc 1500 tcaccggagc tatgaaaatg ccatcaacaa tcttggcatt gagattaatg aggacgtacc 1560 tgaaagttcc ggcactaatg aaacattgct taacaatgaa atatctttag caatgtcacc 1620 tgctgaacat gtgcaagctg ttcaagaaat tgagtcttta ctctctaacc ccgaagcggc 1680 accaatattg ccccctgcac atgttaaaac atgggctagc cttgcatctg acacttccag 1740 cactaaaaac cgtgaaattg aagatatagt ggctaagctg gaaatacaaa gaaatgaagc 1800 tagttgcagc taccttcaac caaataagga attgtctaaa ctcaaggctg ctgataacaa 1860 tctcccctgg aatgcttgga tcccattgct taatgcacac ggcttcaaag gagatcaatt 1920 acaatacggc ccagatggca acttgataca gcccatccaa gacattaaca attcacagcc 1980 tagatctgac tatccgtctt ctctgccatg tgaacttgtg gaagctttga ggaaaattaa 2040 gcgtgctgtc tatgccatcc caataagcca caggagggct agtgcttaca gttctgacat 2100 caaaaataac agaactggca aacttctctg caaccaaagc aaagaatgga aagaaagctt 2160 tgctttcaaa atgcaacatg aagacatcgt caaatcaggt gttgtcatac atggctgcgg 2220 aggttctggc aaatcccagg cattacaaaa cttcttgaga acattgggtg attcaaatga 2280 ttgctgtact gttgtagtac ccactgttga acttagaaat gactgggtaa acaaactcca 2340 taaattgccc atggagcaca tcaaaacatt tgagaaagca atgattcaac ctggctttcc 2400 aattgttata tttgacgatt acaccaagtt gccacctggc tacattgaag cctacctatt 2460 tcaccatgcc aacactgagc ttttcatact tactggtgat tctaggcaaa gcgtgtacca 2520 tgaatctaac aatgaagcgt acattgccgc attagatgaa gctgttgcat actacgctaa 2580 ttactgcggt ttttacctaa atgctactca tagaaatgtc cgtagtttag ccaataaact 2640 tggtgtttac agtgagaaag aaggacactt gaaaatcact tttgcttcac atgccttaca 2700 aaagtgcaaa gtgccaattc tagttccttc tcaaatgaaa aagagtgcta tgttagatat 2760 tggacataaa tccatgacct atgctggttg ccaaggttta acagcaccca aggtacaaat 2820 tctccttgat aaccacacgc aacattgctc tgacagagtt ctgtacacct gtctgtctcg 2880 tgcagttgat tccatccact tcatcaatac tggtcccaac aattcagaat tttgggataa 2940 gcttgaagca acaccatatc tcaaagcctt cattgatgtc tatagagatg aaaaaactga 3000 aatgctcaat tctaagcccg ctgatgatag tccaactgag cctgaagcac ctgttacaca 3060 tttcccaata gcaaatggaa ataacttaga gaaattagct tctgctttgc ctggaaaatt 3120 tgctagggag atttatgaca agcatcacgg ctactccaac acaatccaaa ctgagaaccc 3180 tgtggtccaa cttttccaac atcaacaagc gaaagacgag acactcttct gggctacaat 3240 tgaagctaga ttatccataa caactcccga agcaaacctc agagaatttt tgcttaagaa 3300 agatgttggg gacattctct tcttcaatta ccacaatgcg atgtgcttgc ccgccgaccc 3360 tgttgacttt gaagaaaaaa cctgggagat ttgtgctgct gaagtgaaaa acacttatct 3420 tgccaaaccc atggctaatc ttattaatgc ggcaagtaga caatcacccg actttgactc 3480 gaataagatc tcattattcc taaagtctca atgggtgaaa aaagtggaaa aacttggagc 3540 tatcaaatca aaacctggtc agaccatagc tgcttttatg caacaaacag tcatgttgta 3600 tggtactatg gccaggtact taaggaaaat gcggcaaaga ttccagccaa aacacatatt 3660 catcaattgt gaaaccacaa ctgatgatct caataaattt gtcaaagatg gctggaactt 3720 taacagaacc gcccaaacaa atgacttcac tgcttttgac cagtcacaag atggagcaat 3780 gcttcaattt gaagtcatga aagcaaaatt ttttaacatt ccagctgatg tcattgaagg 3840 ctacatcaac atcaagctga atgctaaaat tttccttgga acactctcaa taatgagact 3900 ttctggtgaa ggtcccacat ttgacgctaa cactgagtgt tcgattgcat acactgccac 3960 aagattccat attgacaata ctgttaagca agtgtatgcc ggtgacgaca tggcattaga 4020 tggagttgtg agtgaaaaga aatcattcag gaagttgcaa aatctactaa aactcacttc 4080 taaaacgctg tacccaaaac aggttaaagg ggattacgct gaattttgcg gttggacatt 4140 tacaccaggg ggtataatta aaaatccact taaaatgcat gcctcaatta tgctgcaaga 4200 agccattggc aatctgcaca cagcagccag atcttatgca atcgacatga agcattcata 4260 ccaaatgggt gaccaactcg caggcattct aaccctcggt gaacctgaac tccatttcct 4320 agctgtgaga aagcttcaca aactccatca aggcgaggcc atgcgtcttg gggagaaaag 4380 tccaccaaga tcaacccatt aaggggttaa gttttcccca gtttgaaatg gaaagaacaa 4440 ctttgattaa tttacttctg ttacacaaat ttgaacacaa gattaacact gaaggaatca 4500 ttgttgtgca cggaattgct ggaactggga aaaccacatt gcttaggact ttatattctg 4560 cctaccctag cttagttata ggttcaccta ggccttgtta cttagataaa gctaataaaa 4620 ttttacaagt ttgcctttcc tgttttccaa ataccttgtg tgacattgtt gacgagtacc 4680 atctcttaga aagttttcct gaaccaaaac tagccatttt tggtgacccc tgtcagtgca 4740 cttacattga aagattgaga atacccaact acacatcctt cagaacacac cgatttggca 4800 aatccactgc tgctctacta aacaagttat ttgatcttaa cattgagtca gtccaagcac 4860 aagacgacac agtagaatac tttgatcctt ttgcagtgga cccctctgaa cacatttctg 4920 cttcagaaaa agaggttttg gaatttgtag gtgatcaagt tgagactaca agctctgaag 4980 aactagctgg tctcgagttt agtgaagtta ctttctactg taccacactt gctggtgctg 5040 ttcaagaaaa tcctgccaaa accttcattt cactcactag acacacttca aagctcacaa 5100 ttggagaact aaatgccagg tctgactcct agagcagatc ttactgacac gtacaaaatc 5160 attgctatag cctttctact gtcagcttgc atttacttcc aaaacagtca ttatcaacca 5220 gttgcaggtg ataatttgca cagactaccc ttcggtggtc agtatcaaga cggaactaag 5280 aagatttctt actttccgca gcaacaatcc tactttcact caggaaacaa gcttaatgtc 5340 ctcatactta tcttcattct tacactgggt attgtcttca ccaataaatt tagttttagc 5400 attagccgta atactcacca gcatcattgc tacaacacac attctgcaac ccaaacaggt 5460 caatcagtgc caggtcatca ttgacggtgc agccatagtt ataacaaatt gtccaaacac 5520 acccgaagtt cttaaagcaa tcaacttctc cccttggaac gggttaagtt ttcctcaatt 5580 gtgaaatcat atttgttatc tagttaaatt taaacaattt aactcaacta tggaaaacca 5640 acctacagct tctaacccat cagatgcacc accaactgct gctcaagctg gtgcccagag 5700 cccagccgac ttctcaaatc ctaatacagc tccttcccta agtgatttga agaagatcaa 5760 atacgtgtca actgtcactt cagttgccac gcctgctgaa attgaagccc ttggcaagat 5820 ctttactgcc atgggtttag cagccaatga gaccggacct gccatgtggg acctcgctcg 5880 tgcttatgct gatgtgcaaa gttcaaaatc tgcacaactt ataggtgcca caccatccaa 5940 ccctgctttg tctagacgtg cacttgctgc acagtttgat cgtatcaata tcacacccag 6000 acaattctgc atgtattttg caaaaattgt ttggaacata ctgttagaca gcaatgtgcc 6060 acctgccaac tgggcaaaat tgggctatca ggaagatacc aagtttgctg cttttgactt 6120 ctttgatgga gtcacaaacc cagctagtct acagcctgca gatggcctaa ttaggcagcc 6180 caatgaaaaa gagcttgctg ctcactcggt tgctaaatat ggtgcccttg cccgccagaa 6240 aatatccact ggtaactaca tcaccaccct tggtgaagtt acacgtggtc acatgggcgg 6300 cgccaacact atgtacgcaa ttgatgcacc tcctgaactt taaacactcg aaacttaatc 6360 agagtggggt tttctatagt ttattttccc ttagtatcta aatctactaa at 6412 //