ID HQ663890; SV 1; linear; genomic RNA; STD; VRL; 6417 BP. XX AC HQ663890; XX DT 22-JUN-2011 (Rel. 109, Created) DT 22-JUN-2011 (Rel. 109, Last updated, Version 1) XX DE Pepino mosaic virus isolate SAR09, complete genome. XX KW . XX OS Pepino mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6417 RA Tiberini A., Tomassoli L.; RT ; RL Submitted (01-DEC-2010) to the INSDC. RL Virology, CRA PAV Plant Pathology Research Centre, Via C.G. Bertero 22, RL Rome, Italy 00156, Italy XX DR MD5; 8aaffdc74ae0ccd630c647b15346b45d. DR EuropePMC; PMC3356388; 22623984. XX FH Key Location/Qualifiers FH FT source 1..6417 FT /organism="Pepino mosaic virus" FT /host="tomato" FT /isolate="SAR09" FT /mol_type="genomic RNA" FT /country="Italy" FT /collection_date="2009" FT /proviral FT /db_xref="taxon:112229" FT 5'UTR 1..85 FT CDS 86..4402 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:F8SR68" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:F8SR68" FT /protein_id="AEI30838.1" FT /translation="MSRVRNTLEKIRDPQVQSSICEAAYQHVRPVLKESLINCPYALND FT YEADTLENLGVTINPHAIQTHTHAAAKVVENRMLEIVGHHLPKDEKVTFIFLKRSKLRY FT MRRAAVHKDVFVNHNIEPKDFFRYDDESTSTSFSVNTRIAYISDSLHFMEPADVTHLFD FT RCHNLKTLMATVVLPVEAIHKQTSLFPAIYSINYNEEGFEYIPGSHGGGAYFHKYETLD FT WLKYSRFVGQDPLTGLRYTITIQMVESLGANHLFLFQRGNFETPLYRTFQKNSFVTFPN FT IFHPQHVNATKPMPRSRAIQLYLYVKSVNKVTQRDIFAKVRQLISTAELELYDPDELTH FT IVNYFAYVSELSSINDYDNMLKSSFFKKLVAPMQHDWRCMIEFFRGKSDFNQLLTALQW FT KDFSYTIKTEELVIATHTEIGQAICKAATTYKERRQLTNLVKQGAVTLADFKEADQHVE FT YTHFDPEFKSTVDPHRSYENAINNLGIEINEDVPESSGTNETLLNNEISLAMSSAEHVQ FT AVQEIESLLSNPEAAPILPPAHVKTWASLASDTSSTKNREIEDIVAKLEIQRNEASCSY FT LQPNKELSKPKAADNNLPWNAWIPLLNAHGFKGNQLQYGPNGNLIQPIQNINNSQPKSD FT YPSSLPCELVKTLRKIKRAVYAIPISHRRASAYSSDIKNNKTGKLLCNQSKKWKESFAF FT KMQHENIVKSGVVIHGCGGSGKSQALQNFLRTLGDSNDCCTVVVPTVELKNDWVNKLHK FT LPMEHIKTFEKAMIQPGFPIVIFEEYTKLPPGHIEAYLFHHANTELFILPGDYKQSVYH FT ESNNEAYIASLDEAVAYYANYCGFYLNATHRNVRSLANKLGVYSEKEGHLKITFASHAL FT QKCKVPILVPSQMKKSAMLDIGHKSMTYAGCQGLTAPKVQILLDNHTQHCSDRVLYTCL FT SRAVDSIHFINTGPNNSAFWDKLEATPYLKAFIDVYRDEKTEMLNSKPADDSPTEPEAP FT VTHFPIANGNNLEKLASALPEKFAREIYDKHHGHSNTIQTENPVVQLFQHQQAKDETLF FT WATIEARLSITTPEANLREFLLKKDVGDILFFNYYNAMCLPADPVDFEEKTWEICAAEV FT KNTYLAKPMANLINAASRQSPDFDSNKISLFLKSQWVKKVEKLGAIKSKPGQTIAAFMQ FT QTVMLYGTMARYLRKMRQRFQPKHIFINCETTTDDLNKFVKDGWNFNRTAQTNDFTAFD FT QSQDGAMLQFEVMKAKFFNIPADVIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDANTE FT CSIAYTATRFHIDNTVKQVYAGDDMALDGVVSEKKSFRKLQNLLKLTSKTLYPKQVKGD FT YAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDQLHDYL FT TLDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH" FT CDS 4428..5132 FT /codon_start=1 FT /product="triple gene block protein 1" FT /db_xref="GOA:Q1L7W4" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q1L7W4" FT /protein_id="AEI30839.1" FT /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA FT YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFLEPKLAIFGDPCQC FT TYIERLRIPNYTSFRTHRFGKSTAALLNKLFDLNIESVKVQGDTVEYFDPFAVDPSEHI FT SASEKEVLEFVGDQVETTSSEELAGFEFSEVTFYCTTLAGAVQENPAKTFISPTRHTSK FT LRIGELNARSDS" FT CDS 5113..5484 FT /codon_start=1 FT /product="triple gene block protein 2" FT /db_xref="GOA:F8SR70" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:F8SR70" FT /protein_id="AEI30840.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSVSRNTHQH FT HCYNTHSATQTGQSVPGHH" FT CDS 5336..5584 FT /codon_start=1 FT /product="triple gene block protein 3" FT /db_xref="GOA:Q334E8" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q334E8" FT /protein_id="AEI30841.1" FT /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL" FT CDS 5628..6341 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:F8SR72" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:F8SR72" FT /protein_id="AEI30842.1" FT /translation="MENQPTASNPSDVPPTAAQAGAQSPADFSNRNTAPSLSDLKKIKY FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" FT 3'UTR 6342..6417 XX SQ Sequence 6417 BP; 2067 A; 1463 C; 1149 G; 1738 T; 0 other; gaaaacaaaa cataacacat aatatcaaaa gtgaccaaac acaacataac cacgtggaaa 60 aacagcgaaa gcactttacc acattatgtc tcgtgttaga aacactttag aaaagatcag 120 ggacccacaa gtacaatcta gcatttgtga agccgcttac caacatgtta gacctgtgct 180 caaggaatcc ctaatcaact gcccttatgc gcttaatgac tatgaagcag acacccttga 240 gaatttaggt gtcacaataa acccccatgc aatccaaaca catactcatg cggcagctaa 300 agttgtggaa aatagaatgc tcgaaattgt tggacaccac ttgcccaagg acgagaaagt 360 taccttcatt ttcctcaaaa gaagcaaact gagatacatg cgaagagctg ctgtacataa 420 agatgttttt gttaatcaca atatagaacc caaggatttc ttcaggtatg atgatgaatc 480 cacatctact agcttctccg tgaacaccag gatcgcttac atctccgatt ctctacattt 540 catggaacca gccgatgtga cccacctctt tgaccgttgc cacaatctta aaacactgat 600 ggcaactgtt gttttacctg ttgaagccat ccacaaacaa acatctttat ttccagcgat 660 atactccatt aattacaatg aagaaggttt tgagtatatc cctggttctc acggtggagg 720 ggcatacttt cataagtatg aaacattaga ctggctcaaa tactctagat tcgttggcca 780 ggacccccta actggactcc gatacaccat aaccattcaa atggtggaga gtttaggagc 840 caaccacctt ttcctcttcc aaagaggaaa ctttgaaacg cctttatata ggacgtttca 900 aaaaaatagc tttgtgacct ttcctaacat cttccatccc caacatgtta atgccacaaa 960 gcccatgcca agatccaggg caattcagct gtatttatat gtcaaatctg tcaataaggt 1020 gacacaaaga gatatctttg cgaaagtaag gcaacttata tctacagctg aacttgaatt 1080 gtatgaccct gacgaactta cacatattgt caattatttc gcatatgtct cagaactaag 1140 ctcaatcaac gactatgaca atatgctcaa atcaagtttt ttcaaaaaac ttgttgcacc 1200 catgcaacat gactggaggt gcatgattga attctttcgg ggaaaaagtg atttcaatca 1260 acttttaact gctcttcaat ggaaagactt ctcttacacc attaaaactg aagagttagt 1320 tattgctaca cacactgaaa ttggccaggc aatctgtaaa gctgcgacca catacaaaga 1380 aagaagacaa ttgaccaatt tagtcaaaca aggcgcagta acattagctg atttcaaaga 1440 agcggaccag catgtggagt acactcactt tgatcctgag tttaaatcca ctgttgaccc 1500 ccaccggagc tatgaaaatg ccatcaacaa tcttggcatt gagattaatg aggatgtacc 1560 tgaaagttcc ggcactaatg aaacattgct taacaatgaa atatctttag caatgtcatc 1620 tgctgaacat gtgcaagctg ttcaagaaat tgagtcttta ctctctaacc ccgaagcggc 1680 accaatattg ccccctgcac atgttaaaac atgggctagc cttgcatctg acacttcaag 1740 cactaaaaac cgtgaaattg aagatatagt ggctaagctg gaaatacaaa gaaatgaagc 1800 tagttgcagc taccttcaac caaataagga attgtcaaaa cccaaggctg ccgataacaa 1860 tctcccctgg aatgcttgga tcccattgct taatgcacac ggcttcaaag gaaatcaatt 1920 acaatacggc ccaaatggta acttgataca gcccatccaa aacattaaca attcacagcc 1980 taaatctgac tatccgtctt ctctgccatg tgaacttgta aaaactttga ggaaaattaa 2040 gcgtgctgtc tatgccatcc caataagcca caggagggct agtgcttaca gttctgacat 2100 caaaaataac aaaacaggca aacttctctg caaccaaagc aaaaaatgga aagaaagctt 2160 tgctttcaaa atgcaacatg aaaacatcgt caaatcaggt gttgtcatac atggttgcgg 2220 aggttctggc aaatcccagg cattacaaaa cttcttgaga acattgggtg attcaaatga 2280 ttgctgtact gttgtagtac ccactgttga acttaaaaat gactgggtaa acaaactcca 2340 taaattgccc atggagcata tcaaaacatt tgagaaagca atgattcaac ctggctttcc 2400 aattgttata tttgaagaat acaccaagtt gccccctggc cacattgaag catacctatt 2460 tcaccatgcc aacactgagc ttttcatact tcctggtgat tacaagcaaa gcgtgtatca 2520 tgaatctaac aatgaagcgt acattgcctc attagatgaa gctgttgcat actacgctaa 2580 ttactgcggt ttttacttaa atgctactca tagaaatgtc cgtagtttag ccaataaact 2640 tggtgtttac agtgagaaag aaggacactt gaaaatcact ttcgcttcac atgccttaca 2700 aaagtgcaaa gtgccaattc tagttccttc tcaaatgaaa aagagtgcta tgttagacat 2760 tggacataaa tccatgacct atgctggttg ccaaggttta acagcaccca aagtacaaat 2820 tctccttgat aatcacacgc aacattgctc tgacagagtt ctgtacacct gtttgtctcg 2880 tgcagttgat tccatccact tcatcaatac tggtcccaac aattcagcat tttgggataa 2940 gcttgaagca acaccatatc tcaaagcctt cattgatgtc tatagagatg aaaaaactga 3000 aatgctcaat tctaagcctg ctgatgacag tccaactgag cctgaagcac ctgtcacaca 3060 tttcccaata gcaaatggaa ataacttaga gaaattagct tctgctttgc ctgaaaaatt 3120 tgctagggag atttatgaca agcatcatgg ccactccaac acaatccaaa ctgagaaccc 3180 tgtggtccaa cttttccaac atcaacaagc gaaagacgag acactctttt gggctacaat 3240 tgaagctaga ttgtccataa caactcctga agcaaacctc agagaatttt tgcttaagaa 3300 agatgttgga gacattctct tcttcaatta ctataatgcg atgtgcttgc ctgccgatcc 3360 tgttgacttt gaagaaaaga cctgggagat ctgtgctgct gaagtgaaaa acacttatct 3420 tgccaaaccc atggccaatc ttatcaatgc ggcaagtaga caatcacccg actttgactc 3480 taataagatc tcattattcc taaagtctca atgggtgaaa aaagtagaaa aacttggagc 3540 tatcaaatca aaacctggtc agaccatagc tgcttttatg caacaaacag tcatgttgta 3600 tggtacaatg gccaggtact taaggaaaat gcggcaaaga ttccagccaa aacacatatt 3660 catcaattgt gaaaccacaa ctgatgatct caataaattt gtcaaagatg gctggaactt 3720 taacagaacc gcccaaacaa atgacttcac tgcttttgac cagtcacaag atggagcaat 3780 gctgcaattt gaagtcatga aagcaaaatt ttttaacatt ccagctgatg tcattgaagg 3840 ctacatcaac atcaagctga atgctaaaat tttccttgga acactctcaa taatgagact 3900 ttctggtgaa ggtcccacat ttgacgctaa cactgagtgt tcgattgcat acactgccac 3960 aagattccat attgacaata ctgttaagca agtgtatgcc ggtgacgaca tggcattaga 4020 tggagttgtg agtgaaaaga aatcattcag gaagttacaa aatctactaa aactcacttc 4080 aaaaacgctg tacccaaaac aggttaaagg ggattacgct gaattttgtg gttggacttt 4140 cacaccaggg ggtataatta aaaatccact taaaatgcat gcctcaatta tgctgcaaga 4200 agccattggc aatctgcaca cagcagccag atcttatgca atcgacatga agcattcata 4260 ccaaatgggt gaccaactgc acgactacct aaccctcgat gaagctgaac aacatttcct 4320 agctgtgaga aagcttcaca aactccatca aggcgaggcc atgcgtcttg gggagaaaag 4380 tccaccaaga tcaacccatt aaggggttaa gttttcccca gtttgaaatg gaaagatcaa 4440 ctttgatcaa tttacttctg ttacacaaat ttgaacacaa gattaacact gaaggaatca 4500 ttgttgtgca cggaattgct ggaactggga aaaccacatt gcttaggact ttattttctg 4560 cataccctag cttagttata ggttcaccta ggccttgtta cttagataaa gctaataaaa 4620 tttcacaggt ttgcctttct tgttttccaa ataccttgtg tgacattgtt gacgagtacc 4680 atctcttaga aagttttctt gaaccaaaac tagccatttt tggtgacccc tgtcagtgca 4740 cttacattga aaggttgaga atacccaact atacatcctt cagaacacac cgatttggca 4800 aatccactgc tgctctacta aacaagttat ttgatcttaa cattgagtca gtcaaagtac 4860 aaggcgacac agtagaatac tttgatcctt tcgcagtgga cccctctgaa cacatttctg 4920 cttcagaaaa agaagttttg gaatttgtag gtgatcaagt tgagactaca agctctgaag 4980 aactagctgg tttcgagttt agtgaagtta ctttctactg taccacactt gctggtgctg 5040 ttcaagaaaa tcctgccaaa accttcattt cacccactag acacacttca aagctcagaa 5100 ttggtgaact aaatgccagg tctgactcct agagctgatc ttactgacac gtacaaaatc 5160 attgctatag cctttctact gtcagcttgc atttacttcc aaaacagtca ttatcaacca 5220 gttgcaggtg ataatttgca cagactaccc ttcggtggtc agtatcaaga cggaactaag 5280 aagatttctt actttccgca gcaacaatcc tactttcact caggaaacaa gcttaatgtc 5340 ctcatactta tcttcattct tacactgggt attgtcctca ccaataaatt tagttttagc 5400 gttagccgta atactcacca gcatcattgc tacaacacac attctgcaac ccaaacaggt 5460 caatcagtgc caggtcatca ttgacggtgc agccatagtt ataacaaatt gtccaaacac 5520 acccgaagtt cttaaagcaa tcaacttctc cccttggaac gggttaagtt ttcctcaatt 5580 gtgaaatcat atttgttatc tagttaaatt caaaatttaa ctcaactatg gaaaaccaac 5640 ctacagcttc taacccatca gatgtaccac caactgctgc tcaagctggt gcccagagcc 5700 cagccgactt ctcaaatcgt aatacagctc cttccctaag tgatttgaag aagatcaaat 5760 acgtgtcaac tgtcacttca gttgccacgc ctgctgaaat tgaggccctt ggcaagatct 5820 ttactgctat gggtttagca gccaatgaga ccggacctgc catgtgggac ctcgctcgtg 5880 cttatgctga tgtgcaaagt tcaaaatctg cacaacttat aggtgccaca ccatccaacc 5940 ctgctttgtc tagacgtgca cttgctgcac agtttgatcg tatcaatatc acacccagac 6000 aattctgcat gtattttgca aaaattgttt ggaacatact gttagacagc aatgtgccac 6060 ctgccaactg ggcaaaattg ggctatcagg aagataccaa gtttgctgct tttgacttct 6120 ttgatggagt cacaaatcca gctagtttac agcctgctga tggcctaatc aggcagccca 6180 atgaaaaaga gcttgctgct cactcggttg ctaaatatgg tgcccttgcc cgccagaaaa 6240 tatccactgg taactacatc accacccttg gtgaagttac acgtggtcac atgggcggcg 6300 ccaacactat gtacgcaatt gatgcacctc ctgaacttta aacactcgaa acttaatcag 6360 agtggggttt tctatagttt attttccctt agtatctaaa tctactaaat aaaaaaa 6417 //