ID HQ660513; SV 1; linear; genomic RNA; STD; VRL; 4003 BP. XX AC HQ660513; XX DT 26-JUN-2011 (Rel. 109, Created) DT 26-JUN-2011 (Rel. 109, Last updated, Version 1) XX DE Carnation mottle virus isolate China, complete genome. XX KW . XX OS Carnation mottle virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Alphacarmovirus. XX RN [1] RP 1-4003 RA Tong A.Z., Wang L.C., Li X.P., Kong B.H., Cai H., Chen H.R.; RT ; RL Submitted (26-NOV-2010) to the INSDC. RL College of Plant Protection, Yunnan Agricultural University, Kunming, RL Yunnan 650201, China XX DR MD5; 4155d5c7501ab2273db070077d49c422. XX FH Key Location/Qualifiers FH FT source 1..4003 FT /organism="Carnation mottle virus" FT /host="carnation" FT /isolate="China" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="25-Oct-2010" FT /db_xref="taxon:11986" FT misc_feature 70..2679 FT /note="similar to RNA-dependent RNA polymerase" FT CDS 2334..2519 FT /codon_start=1 FT /product="P7 protein" FT /db_xref="GOA:F8SPH5" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:F8SPH5" FT /protein_id="AEI55439.1" FT /translation="MDIEPEVPVVGKQLLAGNRGKQKTRRSVAKDAIRKPASDSTNGGN FT WVNVADKIEVHIHFNF" FT CDS 2425..2679 FT /codon_start=1 FT /product="P9 protein" FT /db_xref="GOA:Q5ZF37" FT /db_xref="UniProtKB/TrEMBL:Q5ZF37" FT /protein_id="AEI55438.1" FT /translation="MPSVNLHLIVLTGVIGLMLLIRLKCTFTSTFSLPPLVTLNQIIAL FT SFCGLLLNSISRAERACYYNYSVDSSKQQHISISTPNGK" FT CDS 2669..3715 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:F8SPH7" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR013669" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:F8SPH7" FT /protein_id="AEI55437.1" FT /translation="MENKGEKIAMNPTVQTLAQKGDKLAVKLVTRGWASLSTNQKRRAE FT MLAGYTPAILAFTPRRPRMTNPPPRTSRNSPGQAGKSMTMSKTELLSTVKGTTGVIPSF FT EDWVVSPRNVAVFPQLSLLATNFNKYRITALTVKYSPACSFETNGRVALGFNDDASDTP FT PTTKVGFYDLGKHVETAAQTAKDLVIPVDGKTRFIRDSASDDAKLVDFGRIVLSTYGFD FT KADTVVGELFIQYTIVLSDPTKTAKISQASNDKVSDGPTYVVPSVNGNELQLRVVAAGK FT WCFIVRGTVEGGFTKPTLIGPGISGDVDYESARPIAICELVTQMEGQILKITKTSAEQP FT LQWVVYRM" XX SQ Sequence 4003 BP; 1121 A; 859 C; 1095 G; 928 T; 0 other; gggtaagctg gcgggcaaac ctacactcta tcttaattgc attatatatt ccaaccatct 60 gctttcacta tgggattacc cagtctacta gtggaaggcg ttattggatg cactctagtc 120 ggtggtttgg tagctgtggg tagcgcagcg ctggccgttc gggcaaccat cggtgttgta 180 gaattcaata gggagtgtgt gcgcggggcg agaaggatcg tagctagcgg aggaaagtgc 240 ttaatagtcc aatcccctta tggcaatccc aaccaaggat agataagagg tgaagacgaa 300 gaaattgata atgtggagga gtcaacaccg gaggaattga ctcagttgat tgaggttaag 360 gcggaagtgg atgggaaaga ggtcgttgtc tctaagaagc gtgtagtaaa caggcacttg 420 agacaacgat tcgttcgctc catagccatc gaagccaaga atcactttgg tggtgacatc 480 agccctagca aggccaacta tctttccgtt tccaagtttt tgacggggaa atgcaaggag 540 agacatgttg tgcccgctca cactagagat tgtgtgagtg ctgctatggt gctggtgttt 600 acccctgacg tccacgagat caggatgatg gcaggattgg cgtctgacgc agcgtacgga 660 agaaagatcg caatggcaag catactgaac aggaaggggt ggtgctggag gctgatggta 720 aatccattag atagggcaag atggtgggaa atgtggtgcg ttgtaaacgg gtttgactcc 780 aacaaacccg tcacctttcc caaatagggg ggcctgttct acctcaatgg tgtggagacg 840 aaaattcgtc gtggaggcca cccatcagtg attgaggtag acgggcaatg tcctcccaaa 900 gagagaaaac tctacgtaca gaatgccata accactggtt atgaatatag ggtccacaac 960 cattcgtacg caaacctcag acgagggctc cttgaaagag ttttctatgt tgagcgcaac 1020 aaggagctag tcagctgtcc gcaacctgaa cccggcagct ttaaagagat gggatacctg 1080 cgacgcaggt tccatagagt gtgtggtaat cattcccgga tctctgccaa tgatttggta 1140 gattgttatc agggcaggaa acgcacaatc tatgagaatg cagcagcgtc tctactcgat 1200 agagctatcg aaaggaagga tggcgatctc aaaaccttta tcaaggcgga gaaattcaac 1260 gtgaatctga aaagtgatcc tgctcctcgg gttatacaac ctaggagccc tcgctacaat 1320 gtggagttgg gccggtactt aaagaagtat gaacaccatg cttacaaagc cttagacaag 1380 atctggggag gaccaacagt catgaaagga tacactacag aggaggtagc acagcacatt 1440 tggagcgcat ggaatcaatt ccagacacct gtagccatag gatttgacat gtcacgattc 1500 gatcagcatg tgtctgtagc cgcgctcgag ttcgaacatt catgctattt ggcctgtttt 1560 gaaggggacg ctcatctcgc caatttgctt aaggtgcaac tggtgaatca tggcgtgggt 1620 tttgctagca atggaatgtt gcgatacact aaggaagggt gcggaatgag cggtgacatg 1680 aacactgcct tgggcaactg tttgttggct tgccttatca ccaaacactt aatgaaaatc 1740 aggagcagac tgatcaacaa tggggatgac tgcgtgctta tttgcgaaag aacagacacc 1800 gactacgtcg tgagtaattt aacgacggga tggagtcgat ttggattcaa ttgcatagca 1860 gaagagccag tgtacgaaat ggaaaagatc aggttctgcc agatggcacc ggtgtttgat 1920 ggagcaggtt ggctgatggt cagggaccct ttggtgagca tgagcaagga ttctcactcc 1980 ttagtgcatt ggaacaacga aaagaatgca aaacaatggc tgaaatcagt gggaatgtgc 2040 ggtctgcgga ttgccggggg ggttccagtt gtgcaagagt tctaccaaaa atacgttgaa 2100 acagccggga atgtgagaga gaacaaaaat atcacggaga agagtagttc tgggttcttt 2160 atgatggcgg atcgcgctaa gcggggctat tctgctgtgt ctgaggtgtg ccgattcagc 2220 ttctaccagg cattcggcat tacgccagac cagcaaatcg cgttggaggg ggagatcagg 2280 tctctcacta tcaacaccaa cgtggggccc cagtgtgaag cggcagattc actatggata 2340 ttgaaccgga agtaccagta gttgggaagc aattgctcgc tgggaataga ggaaaacaaa 2400 agacacgtag atcggtggcc aaggatgcca tccgtaaacc tgcatctgat agtactaacg 2460 ggggtaattg ggttaatgtt gctgataaga ttgaagtgca cattcacttc aacttttagt 2520 ttgcccccac tggtaacttt aaatcagata atagcgttgt cattttgtgg tcttctatta 2580 aacagcatct ctcgggcaga aagagcttgc tattacaact actctgttga tagttctaaa 2640 caacaacaca tttcgataag tacaccaaat ggaaaataaa ggagaaaaga tcgcgatgaa 2700 tcccactgtg caaacattgg cgcagaaggg ggacaagtta gccgtgaagt tggtgacaag 2760 gggttgggcc tctctgagta cgaaccagaa gaggagagct gaaatgcttg ctggatacac 2820 tccagcgatc ctagccttca caccccgacg accacggatg acgaaccctc ctccaagaac 2880 cagtaggaat tcaccaggac aagctggaaa gtccatgacg atgagtaaga ccgaactatt 2940 aagcaccgtc aaaggtacca caggtgttat cccaagcttt gaagactggg tcgtttcccc 3000 ccgaaacgta gccgtcttcc ctcaactctc gctgctggcg acgaacttca acaagtaccg 3060 cattactgcg ctcactgtga agtactcacc cgcgtgcagc ttcgagacca atgggagggt 3120 ggctctggga ttcaacgatg acgcttcgga cacaccacca accaccaagg ttggatttta 3180 cgatctgggc aaacatgtgg aaactgctgc acagacagct aaggatctag tgataccagt 3240 agacggcaaa acccggttca tcagggactc ggctagtgat gatgccaaac tagtcgattt 3300 tgggcggata gtcttgtcaa catacgggtt tgacaaggct gacactgtgg tgggcgaatt 3360 attcatacag tacacgattg tgctgagtga cccaaccaag acggccaaaa tttcacaggc 3420 aagcaacgat aaggtgtcgg acggaccaac gtatgtggtc ccttcggtca atggcaacga 3480 gctacaacta agagtggtag ccgctgggaa atggtgcttt atagtgcggg gtacggttga 3540 gggaggcttc accaaaccca cacttattgg gccaggaatc agcggtgacg tggactatga 3600 aagtgccaga cctatcgcca tttgtgagtt ggtgacacaa atggagggcc agatattgaa 3660 aatcaccaag acctcagcag aacagccact ccaatgggtt gtttatagga tgtgaatgcg 3720 atagaaaagt ttgttagaca cacacggcgg gacgtgttgc cggagctgcc actccgtcca 3780 agatgggtcg atattaacca tctttggcaa cagcgtgcgt gactaatcga acctagtaat 3840 tgcatagcat ccgactgtaa cctgttttct gctgaagacg agggtggtct cgtgatccca 3900 aaccataaaa gaaaccaact tgttggtgga agggcttgga agtaggatca accactgttt 3960 attaattagg ggtgagagta ttcactgtac tctttccccg ccc 4003 //