ID HQ659760; SV 1; circular; genomic DNA; STD; VRL; 7768 BP. XX AC HQ659760; XX DT 24-JAN-2011 (Rel. 107, Created) DT 06-APR-2011 (Rel. 108, Last updated, Version 2) XX DE Banana streak Imove virus strain IRFA910, complete genome. XX KW . XX OS Banana streak IM virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7768 RX DOI; 10.1007/s00705-011-0946-7. RX PUBMED; 21347843. RA Geering A.D., Parry J.N., Thomas J.E.; RT "Complete genome sequence of a novel badnavirus, banana streak IM virus"; RL Arch. Virol. 156(4):733-737(2011). XX RN [2] RP 1-7768 RA Geering A.D.W.; RT ; RL Submitted (29-NOV-2010) to the INSDC. RL Queensland Alliance for Agriculture and Food Innovation, The University of RL Queensland, 41 Boggo Road, Dutton Park, Queensland 4102, Australia XX DR MD5; 267c907708af1dbd9f8717bb1c02b369. XX FH Key Location/Qualifiers FH FT source 1..7768 FT /organism="Banana streak IM virus" FT /host="Musa AAB Group cv. IRFA 910" FT /strain="IRFA910" FT /mol_type="genomic DNA" FT /country="Australia" FT /collection_date="Dec-1999" FT /PCR_primers="fwd_name: IM-F1, fwd_seq: FT tgccaacgaatactacatcaac, rev_name: IM-R1, rev_seq: FT cacccagacttttctttctagc" FT /db_xref="taxon:1016853" FT CDS 668..1198 FT /codon_start=1 FT /product="unknown" FT /note="ORF1" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:E9NLM0" FT /protein_id="ADV58680.1" FT /translation="MDSYWDQEFEKYKNSHAKSISDLAYLNLETADKVSNKDLAFNLHI FT NTYRSDLGFKVAIHSLSKNRELLIQNRKLLEEQELQLQEVHKLSKVIRSQRSDLKDILK FT RQDVLTKELQALREDYLRRKPLSKEDVEELVVRISEQPKFIEKQTEALTEELTKEVQAL FT KVIIHNFEQRLLG" FT CDS 1195..1587 FT /codon_start=1 FT /product="virion-associated protein" FT /note="minor capsid protein; ORF2" FT /db_xref="UniProtKB/TrEMBL:E9NLM1" FT /protein_id="ADV58681.1" FT /translation="MSLAGSKATAIYQEALSSTSAGWEDSGVGFTDKGTISTATLSRQL FT NSLLFLVIKQNQLITTLSEELTQVHNKVKIIEGKGPSKLTPSSEIETINAKLKAIQEIQ FT KSQPKKETSSGSIKVFEDPYKILRRL" FT CDS 1590..7202 FT /codon_start=1 FT /product="polyprotein" FT /note="contains movement protein, coat protein and FT polymerase protein; ORF3" FT /db_xref="GOA:E9NLM2" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR002156" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR028919" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:E9NLM2" FT /protein_id="ADV58682.1" FT /translation="MASRPRVLGSTTRTMVAEPGTPLVDDQIRDYRNAARAAYEAQRVA FT RQTGNIIGRIVGRQPREHTLAMIVDPNSELERSLAHRARTIPAEVLYMTQRGEPTNRVY FT RNRTEERMLVTQGQQDRSFILQESYEALLEAGFEYIHLGVLQVRIQIMHRSYAGTMALV FT VFRDTRWTQEDAEDRSIIAAMEADLSQGHQLIYVIPDIMMTIRDFYQHIQISILTKGYN FT GFQGESNLLVTRSCRCRLSNVPNVGFQYNIQNVVEFLKSKGVKALNATKISTKKFQGGE FT WNIKPSEVVVPMQPTRMITRVNYDSSRSIRFGDYEASTSSAPPTYSTNDDEDEVLGEIH FT QVNMITFLEDDDEFDYPQLAALEQIFAPESGVGEEDDTIIEFLDNLRLSDEEEEYNGDN FT ETETSTPRSKYNIFTFEDDYPQLQKLDNLVLSTNESAISSYNPGDIDMEGVGPGYAPAT FT GGTSYTGAGTSDFPYPRRPRKWENSSEWFNLPMANARQASVFIMPQDFDTKVFERWESS FT VLLHMTDKIFDDPQDKLTYIENLLGESEKKMFITWRMKFTTEYEEMRANALGSNGTQSI FT LNQIRMIFFLENPQVGTTNSQDAAYKTLKQLVCTEMSGPAIYRYLNDYFHLSAKSGRAW FT ASEELSKEFFTKLPKGLGDRVEKSFKEKYPNNTIGVAARITFTRAYMKEICQEAVFQSQ FT LKRLDFCKGTPVHGLYGKDKSYGRRYGVRKSTSYKGKPHKSHVRIDKKKHLTMKRKDCK FT CFACGDIGHFASECPNPKKLMHRVQILQSLELEDGIDVISVGFDESDVSDIYSVSEGED FT NYQFKHEDFGVVDHDVFIMTIEERNHLVPTTSEWRAAMKVTKEEYLCLHQWEFSSERAG FT YCRACKHQALKGSRADCSTCKITICSLCKPHYYKDAAPIPVQKKVVKDDWMNMAKRFMD FT SWKKAEDEKMELKEELNDIKEQIKFSKGKEKEVCTEEIPQIYTQKLELLENENSLLKDL FT EEERKIQDIQVFKEIQAMRKEIESLKAAKEEENKAHEEEKKALKEEILALKKSITEIQK FT PVELVNNVEEHLVLTGKQRNNLLNIKITIEIKEKKITMNAILDTGAAICVCDGQIVDNY FT FRRPSMMNAFIKGVNGITNVQEILEEGRIWIGNQWFRIPRTYVMPQLSEGLHFIIGMNF FT IRAMEGGIRIEQGIVTFYKMITQAQAPPITHDISYIEELELELPLYYDICAANPIGGMF FT NSDLISPAEIQKLKDLGYIGEEPLKHWAKNQVRCRIEVKNPDLIIEDRPLKHVTPAMKE FT SMKRHVDKLLELKVIRPSESKHRTTAIIVQSGTEIDPLTGKEKRGKERLVFNYKRLNDN FT TEKDQYSLPGINTIISRIGNSKIYSKFDLKSGFHQVAMDPESIPWTAFWAIDGLYEWLV FT MPFGLKNAPAIFQRKMDNCFRGTEEFIAVYIDDILIFSDNISDHRKHLKKFLEICKANG FT LVLSPTKMKIGTPEIDFLGATIGNSKIKLQPHIIKKVIETRDEELKEVKGLRKWLGVLN FT YARAYIPNLGKTLGPLYSKTSGNGERRMNSQDWKIVQNIKTQVQRLPDLEIPPTSAIMI FT LETDGCMEGWGGICKWKAKPSDTRLNEKICAYASGSYNPIKSTIDAEVHAVINSLEKFK FT IYYLDKKELIIRTDSQAIVAFYKKQADHKPSRTRWLMLIDYITGLGINVKFEHIDGKEN FT VLADTLSRLVQVLVTKIHHPAEEQLVDAVLEVLKNPKEVAIKKVNHFILLTERWIAGFK FT DEHPVNVLTLDEETRLRCSCQDPITKQGMFAALLQSHTATNPGRWFYKCERNRCHLWIW FT KDLLDQYANEYYINMGLNSLLLNMDWPDEESDPLDPPSPARTEDIFDLANVSNDD" XX SQ Sequence 7768 BP; 2640 A; 1618 C; 1695 G; 1815 T; 0 other; tggtatcaga gctaagtttt ctgtaagttt ttatggcttt tatggggtaa ttcccttaga 60 taggagccta agggctctgc tatgcttcat ttttagaaaa tagctgtgta agtagacttg 120 cataatgatt ctagaaagac taagaagagt attctatgtt atgatactac ttgtgaaagg 180 aaaaaggatt tcttgcgttt ccaagttcta ctgaaataat gtccatctga gaaatgccta 240 atatatagtg aaagggagaa aaatgacttg agttgggagt gttagtttat cggacttgga 300 gcaaaagaac cagaacctta cctggcatgt aagacccaag gggcagaagc tggagaaccc 360 tggtgtgagt ttcttattcg gtattattaa aactctagta tcctcaaaac ttcgtgaagt 420 attccttgaa actataatat tagcaatttg atggtgttca ctagatcaca aaaaaaattt 480 gagttgtgca agaatgaaag attccgatca catgatagtt gactaaactg gaagaccctt 540 ttaagtctga aagaaaaaca gatgcatgag ctacctctag aactggctac aatctattat 600 gagcatggca tcccaaagga ctactcctat ctgtctcaag aatttggttt aaaaaccttt 660 gttaactctg gattcctatt gggatcagga atttgaaaaa tataaaaatt cacacgcgaa 720 gtctatatca gatcttgctt atcttaattt agaaactgct gacaaggtct ctaataaaga 780 ccttgctttt aatctacata tcaataccta ccgcagtgac ctcggtttca aagttgctat 840 acattcttta tccaaaaatc gtgaactact aatccagaac aggaagcttc tggaagaaca 900 agagcttcaa cttcaagaag ttcacaagct ctccaaagtt atacgttcac aacgctcgga 960 tcttaaagac atccttaaaa ggcaggacgt tcttacgaag gagcttcagg ctcttcgtga 1020 ggattattta aggagaaaac ctctcagcaa ggaggacgtt gaggaactgg ttgttcgcat 1080 ctcagaacag ccaaagttta ttgaaaaaca aacagaggcc ctcactgagg aacttacaaa 1140 agaggtgcaa gctcttaagg ttatcattca taacttcgag caaaggctct tgggatgagc 1200 cttgcaggca gcaaggcaac tgctatttac caagaagcac tatcctccac ctcagcaggc 1260 tgggaagact ctggtgtcgg tttcactgat aaaggcacca taagcactgc aacgttatcc 1320 aggcagctaa attctctact attcctagtg atcaagcaga atcagctcat cactacgtta 1380 tctgaggagc tgacccaagt ccacaacaag gtcaagataa ttgaaggcaa aggaccatca 1440 aaactcacgc cttcaagtga aattgaaact atcaacgcca agctcaaagc tatccaagaa 1500 atccagaaga gtcagcccaa aaaggagact tcttcaggat ccatcaaagt ctttgaggac 1560 ccgtataaaa tccttagaag attgtaaaaa tggcgtcaag accaagagtt ctgggctcca 1620 caaccagaac tatggttgca gaaccaggga cccccctggt tgatgatcag atccgggatt 1680 accggaatgc tgcaagagcc gcctatgaag ctcagagggt tgccagacaa actggcaaca 1740 tcatcggaag aattgttgga cgacaaccaa gggagcatac ccttgcaatg atcgtagatc 1800 ccaacagtga gctggagcgc tcactggctc atcgggcaag aaccataccg gctgaagtcc 1860 tttacatgac ccagcgcggt gagccaacaa accgggtcta cagaaatcgt acggaagaaa 1920 ggatgttagt cacacaagga cagcaagaca ggtcctttat tcttcaagaa tcctatgagg 1980 cgttactgga agcaggattt gagtacatcc acctcggagt actacaagtc cgtatccaaa 2040 tcatgcacag atcctacgca ggaacaatgg ccctggtagt ctttagggat accaggtgga 2100 cgcaagaaga tgctgaagat agatccatta ttgccgccat ggaagctgat ctttctcaag 2160 gacatcagct tatatatgta atcccagaca tcatgatgac catccgggat ttctatcagc 2220 atatacaaat aagcatctta accaagggat acaatgggtt ccaaggagag tccaacctct 2280 tggtaaccag aagctgtcgc tgcagattaa gcaacgttcc caacgttggc ttccagtaca 2340 acatccaaaa tgtggtagaa ttcctaaaat caaagggtgt aaaagccctc aatgccacaa 2400 aaatcagcac caaaaaattc caaggaggcg aatggaacat caagccttca gaagtggttg 2460 tacctatgca accaacaagg atgatcacaa gagtcaacta tgactcctcc agaagcatcc 2520 gctttggaga ctatgaggca agcacatcat cagccccacc gacatactcc accaatgatg 2580 atgaagatga agtacttgga gaaattcacc aagtaaatat gattacattc ctcgaagatg 2640 atgatgaatt cgattatcct cagttagcag ctttagagca aatatttgct ccagaaagcg 2700 gggtgggaga ggaagacgac acaatcatcg aattcttaga caacttgaga ctctctgatg 2760 aggaagaaga gtacaatggg gacaatgaaa ccgaaaccag taccccaaga agtaagtaca 2820 acattttcac cttcgaagac gactatcctc aactccagaa acttgataat cttgttctct 2880 ccaccaatga gtctgcaatc agcagctaca accctggaga tattgatatg gaaggagtag 2940 gtccaggata tgcacctgcg acaggaggaa ccagctatac tggagctggg acatctgatt 3000 tcccataccc aagaaggcca aggaaatggg aaaatagttc ggaatggttc aatttaccta 3060 tggctaatgc aagacaagcc tccgtattta tcatgccaca agactttgac accaaagtat 3120 tcgagcgatg ggaaagttct gtcctcctac atatgacaga caaaatcttc gatgatcccc 3180 aagacaagct tacatacatt gagaatttac taggggaatc ggaaaagaag atgttcatca 3240 cttggaggat gaagttcact actgaatatg aagaaatgcg tgcaaacgca ttaggctcca 3300 acggaacgca aagtatcctg aaccagatca ggatgatatt ctttttggaa aatcctcaag 3360 tcggcaccac caatagccag gatgccgcgt acaagacatt aaagcagctg gtatgcacag 3420 aaatgtcggg accagcaata tacagatacc tcaatgacta cttccatcta tcagcaaaat 3480 ccggaagagc ttgggcaagt gaagaactct caaaagaatt ctttacgaaa ctcccaaagg 3540 gattgggaga cagagttgag aaaagcttta aagaaaaata cccaaacaat acaattgggg 3600 tagcagcaag aatcactttt accagagcct atatgaaaga gatatgccaa gaagcagtgt 3660 tccagagcca actcaagaga ttggatttct gcaagggaac accagtccat gggctatacg 3720 gcaaggataa atcctacgga agaagatatg gggtacgaaa gagcacctcg tacaaaggaa 3780 aaccccataa gtcacatgtg agaatcgaca aaaagaagca tctcacaatg aagagaaagg 3840 actgcaagtg ctttgcttgc ggtgatatcg gtcatttcgc atcagaatgc ccgaatccca 3900 agaagctgat gcacagagtt cagatcctac aatcacttga gctagaggac ggtattgatg 3960 tcatctcagt agggtttgat gaatctgacg tctcagacat atattcagta tctgaagggg 4020 aagataacta ccagttcaaa catgaagatt tcggagtagt tgaccatgac gtctttataa 4080 tgactattga ggaaagaaac cacctagtcc ctacaacatc agaatggcgt gcagccatga 4140 aagtcacaaa ggaagaatat ctatgcctac accaatggga gtttagctca gaaagggcag 4200 gatactgtag agcctgcaag caccaggcct tgaaaggtag cagggcagat tgttcaacct 4260 gcaagattac tatctgctca ttgtgcaagc cccactatta caaagatgca gcgcctattc 4320 cagtccaaaa gaaggtcgta aaagatgatt ggatgaacat ggcaaagaga ttcatggaca 4380 gctggaaaaa ggctgaagat gaaaaaatgg aactgaagga agaactcaat gacatcaagg 4440 agcaaatcaa gttctccaaa ggcaaagaaa aagaggtatg cactgaagaa atccctcaga 4500 tttatactca aaaattagaa ctccttgaga atgaaaatag cttgctcaaa gacctggagg 4560 aagaaagaaa gatacaggat atacaggttt tcaaagagat ccaagctatg aggaaagaga 4620 ttgagagcct taaggcagca aaggaagaag aaaataaggc tcatgaggag gaaaagaagg 4680 ctcttaagga agagatttta gccttaaaga aaagcatcac tgaaattcag aagccagtgg 4740 aactagtgaa caacgtggag gaacatctgg ttctgacagg aaagcaaaga aataatctcc 4800 tcaacatcaa aattacaata gagataaaag aaaagaagat caccatgaat gcgatcttag 4860 acacaggagc tgccatatgt gtctgtgatg gtcagatagt tgacaactac ttcaggagac 4920 catcaatgat gaacgccttc ataaagggag taaatgggat caccaacgta caagaaatcc 4980 tagaggaagg aagaatctgg attggcaatc aatggttcag gatccccaga acatacgtta 5040 tgccacaact ctctgaagga cttcacttta tcatagggat gaacttcatt cgtgcaatgg 5100 aaggaggaat tcgtattgaa caagggatag taaccttcta caaaatgatt actcaagctc 5160 aggcaccccc tatcactcat gacatctctt acattgaaga attggaatta gagctgccac 5220 tctactatga catctgtgca gccaacccca taggagggat gtttaacagt gacttgatat 5280 caccagctga gatccagaag ctcaaagacc tcggatatat cggggaagaa cccctgaagc 5340 attgggctaa aaatcaagtc agatgtagaa tagaggtcaa aaaccctgac ctcatcatcg 5400 aggacagacc tctgaaacat gtcacccctg ctatgaagga atcaatgaag aggcacgtgg 5460 acaaactact cgagctgaaa gtaattcgac cctcagaaag taaacataga accactgcaa 5520 tcattgttca gtcgggtacg gagatagacc ctcttacagg aaaagagaaa agagggaagg 5580 agaggctggt attcaactac aagcgcctca atgataacac ggagaaagac caatactcat 5640 taccaggtat caacaccatc attagtagga ttggcaattc taaaatctat agcaaatttg 5700 atcttaaatc aggatttcac caagtcgcca tggaccctga aagtatacct tggacggcgt 5760 tctgggctat agacggactg tacgagtggc ttgttatgcc atttggttta aagaatgcac 5820 ctgccatctt ccagagaaag atggataatt gcttcagagg aaccgaggaa ttcattgcag 5880 tctacataga cgatatactc attttttctg ataacatttc tgatcatagg aagcatctta 5940 agaagttcct ggaaatttgc aaagcaaatg ggcttgttct cagcccaaca aaaatgaaga 6000 ttggcacacc ggaaattgac ttccttggag caaccattgg taactccaaa atcaaattac 6060 agccccacat catcaagaag gtcattgaaa caagagatga ggagctgaaa gaagttaaag 6120 gattaaggaa atggttggga gtccttaatt atgccagggc atacatccct aacctcggga 6180 aaacattggg accgctctat tcaaaaactt ctggcaacgg agagagaaga atgaatagtc 6240 aagattggaa gattgtacaa aacatcaaaa ctcaggtaca aagacttccc gatctagaaa 6300 tccctcccac tagtgcaata atgatacttg aaacagacgg ttgcatggaa gggtggggag 6360 gaatttgcaa atggaaggca aagccatcag atacaaggct gaatgaaaaa atctgtgcct 6420 acgccagcgg cagttacaat ccgatcaaga gtacaattga cgctgaagtc cacgccgtaa 6480 taaacagctt agaaaaattc aaaatatact acctggataa gaaagagctg atcatcagaa 6540 cggatagcca ggctattgtg gcattctaca agaagcaagc tgatcacaaa ccatcgagga 6600 caaggtggtt aatgcttata gattacatca caggccttgg tatcaacgta aagtttgagc 6660 acattgatgg aaaggaaaat gtgcttgctg acacattgtc aagattggta caagtattag 6720 ttaccaaaat tcaccatcca gctgaggaac aattggtgga tgcagttctc gaagtcctca 6780 aaaatccaaa ggaagtggcc atcaagaagg taaaccattt tatcttacta actgaaagat 6840 ggattgcagg attcaaggac gaacatcctg tgaacgttct gactcttgac gaagaaacaa 6900 ggctacgatg ctcatgccaa gatcccatca caaaacaagg gatgtttgct gcccttctgc 6960 aaagtcacac tgctacaaat ccaggacgat ggttctacaa atgtgagcga aacagatgtc 7020 acctctggat atggaaagac ctcttggacc agtatgccaa cgaatactac atcaacatgg 7080 gcctcaactc tttactgctc aacatggatt ggccagatga agagtcagat ccactggatc 7140 ctccaagccc agctagaacc gaagatattt ttgacttggc aaacgtaagc aatgacgact 7200 aaacaagatt cggtgcggaa atggtggacc cataatggta caaatctagg tgcaaatcag 7260 agtcatgcac atagctttat ttcctttaaa aatggattga gccccgggga gccgtccgat 7320 tgtttgataa aaatgtctgg gtgcaatgct ttgtcatgca catgactact taaaggttgt 7380 cggtcggtgc ctgcgtgcat ctcaagcaac cagtacgcta gaaagaaaag tctgggtgca 7440 atgcgctgtc atgcacatga ctactctagc tttattaaag tttgtcggtt gcattattgg 7500 tgcctgcgtg catcactact ctagctttat taaagtttgt cggttgcatt attggtgcct 7560 gcgtgcatcc gaagcaacct ttgcctttct ctatctataa gagaaggcct tgtaactcag 7620 ttgcaagcat gcaattccca cgcaagctta cttctgaatt ctccagaaat caaagtcaat 7680 agaatccttt tcttacagat gttcttgaaa tctctatgag caatcattag acgagtaaag 7740 aacaagatcc gcaaagcccc cccctata 7768 //