ID HQ644142; SV 1; linear; genomic RNA; STD; VRL; 8876 BP. XX AC HQ644142; XX DT 26-APR-2011 (Rel. 108, Created) DT 01-MAY-2011 (Rel. 108, Last updated, Version 2) XX DE Groundnut ringspot and Tomato chlorotic spot virus reassortant segment L, DE complete sequence. XX KW . XX OS Groundnut ringspot and Tomato chlorotic spot virus reassortant OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Tospoviridae; unclassified Tospoviridae. XX RN [1] RP 1-8876 RX DOI; 10.1016/j.virol.2011.02.011. RX PUBMED; 21382631. RA Webster C.G., Reitz S.R., Perry K.L., Adkins S.; RT "A natural M RNA reassortant arising from two species of plant- and RT insect-infecting bunyaviruses and comparison of its sequence and biological RT properties to parental species"; RL Virology 413(2):216-225(2011). XX RN [2] RP 1-8876 RA Vanderspool C., Webster C.G., Adkins S.; RT ; RL Submitted (22-NOV-2010) to the INSDC. RL Agricultural Research Service, United States Horticultural Research RL Laboratory, 2001 South Rock Road, Fort Pierce, FL 34945, USA XX DR MD5; 22d91806ccdd1790da2eca2ee63e7b04. XX FH Key Location/Qualifiers FH FT source 1..8876 FT /organism="Groundnut ringspot and Tomato chlorotic spot FT virus reassortant" FT /segment="L" FT /host="Solanum lycopersicum" FT /isolate="LGMTSG" FT /mol_type="genomic RNA" FT /country="USA:FL" FT /collection_date="Feb-2010" FT /db_xref="taxon:1027232" FT gene complement(218..8842) FT /gene="L" FT CDS complement(218..8842) FT /codon_start=1 FT /gene="L" FT /product="L protein" FT /db_xref="GOA:F5B5Y3" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="InterPro:IPR015841" FT /db_xref="UniProtKB/TrEMBL:F5B5Y3" FT /protein_id="AEB90411.1" FT /translation="MNIQKIRKLIENGTTLLLSIEDCVGSNHGLALDLHKRNSDEIPED FT VIINNNAKNYETMRELIVKISTDGEGLNTGMATVDVKKLNELVSLFEQKYLETELSRHD FT LFGELVSRHLRIKPKQRSEVEIELALRDYLEELNKKQCINSLSNDEFERINKEYVATNA FT TPDNYVIYKESKNSELCLMIYDWKISVDAKTETKTMEKYYKNIWKSFKDIKVNGKPFLE FT DHPVFITIVILKPMGGMPITVTSSRVLGKYEDSPSALHGERSKLAKNAKLLNIYHVGMI FT VGTTPTVVRNYYANTQKLKSEVRGILGDDFGSKDVFFSHWASKYKDRNPTEIAYSEDIE FT RIIESLTTEEITKDEIVHFLFGNFCYHIETMNDQHIADRFKGYQDACLNLKVVPKTDLS FT DLKDHLIQTQNVWESLYGKHLDKILQRIKKKKSKEREIPDITTAFNQNAVEYEEKYPNC FT FTNDLSETKTNFSMTWSPSFEKVELNSNIDYNNAIIKKFRDSFQTTSRITYNSPYSSVH FT NQTNKARDVTNLVKLCLTELSCDTTKFNKQELEDEIDINTGSIKVERTKKSQEWCKHGS FT CLTRNKNEFCMKDTGKENKAVYFKGLAVMNIGMSSKKRILKKEEIKERISKGLEYDTSV FT RQTDPNDDYTSVDMASLTHMKKLIRHDNEESLSWCEKIKDSLFVLHNGDIREEGKIASV FT YNNYAKNPECLYTQDSVLKTEMETCKKINKLCNDLAIYHYSEDMMQFAKGLMVADRYMT FT KESFKILTAANTSMILLAFKGDGMNTGGSGVPYIALHIVDEDMSEQFNICYTKEIYSYF FT RSGSNYIYIMRPQRLNQVRLLSLFKSPSKVPVCFAQFSKKASELEKWLKNKDTEKVNVF FT SMSVTVKQILINIVFSSVMIGTVTKLSRMGIFDFMRYAGFLPLSDYSNIKEYIRDKFDP FT DITNVADIYFVNGIKKLLFRMENLNLSTNAKPVVVDHENDVIGGITNLNIKCPITGSTL FT LTLEDLYNNVYLAIYMMPKSLHNHVHNLTSLLNVPAEWELKFRKELGFTIYEDIYPKKD FT MFDDKDLFSINGLLNVKALSDYYIENVENVGLMRSEIENKEDFLSPCYKITTLKSSKKC FT SQSNIINTDDIIECLQTVKVKDVGNWKGNTLAIIKGLIRTYNEEKNRLIEFLEDNCVNS FT LYLLEKLKEIISSGSVTVRKSMTSKFIRNNHPLTVETYLKTKLYYRNNVTVLKSKKVSE FT ELYDLVKQFHNMMEIDIDSVMNLGKGLEGKKHTFLQMLEFVISKAKNVTGSVDFLVSVF FT EKMQRTKTDREIYLMSMKVKMMLYFIEHTFKHIAQSDPSEAISISGDNKIRALSTLSLD FT TITSYNDILNKNSRKSRLAFLSADQSKWSASDLTYKYILAILLNPVLTTGEASLMVECL FT LMYVKLKKVCIPTDIFLNLKKSQSTFRQNETAIGLLTKGLTTNTYPVSMNWLQGNLNYL FT SSVYHSCAMKAYHKTLECYKGCDFQTRWIVHSDDNATSLIANGEVDKMLLDFSSSSLPE FT MLFRSIEAHFKSFCITLNPKKSYASSSEVEFISERIVNGAIIPLYCRHLANCCTESSHI FT SYFDDLMSLSIHVTMLLRKGCPNEVIPFAYGAVQAQALSIYSMLPGEVNDSIRIFQKLG FT VSLMPNEIPTNMGGWLTAPIEPLSILGPSSNDQIIYYNVIRDFLNKKSLDEVKNSVSTL FT GYLQMRFKELEEKHKKRTLEIKDKKMIFLINLFEKASVSEDSDVLTIGMKFQTMLTQII FT KLPQFINENALNKMSSYKDFSKLYPNLKKNEDLYKSTKKIKFNEDSLLEEDELYEKVAS FT SAEMESVHNIMIQNPETILIAPLNDRDFLLSQLFMYTSPSKRNQLSNQSTEKLALDRVL FT RSKARTFVDIDSHVKMTYEENMEKKILEMQKFDPGSYCSFKTCINLVIKDVNFSMLTPI FT LDAAYPCESRKRDNYNFRWFQTEKWIPVVEGSPGLVVMHAIYGSNYIENLGLKNIPLTD FT DSINVLTSTFGTNLLMDDVKSFVSGSSSFETEAFINANNCQRLVKACNYMITAQNRLLA FT INTCFSRKSFPFYSKFNLGRGFISNTLALLSTIYSKEESYHFVSTANYKLDKTIRTVLN FT AQQDMNLEKILDTAVYISDKLQSLFPTITREDISLILQNICLDSKPIWESLEEKMRKIN FT NSTGSGFTVSNVILSHNSELNTIQKQVVWLWNMGLCSNRTLDFVIRYIRRSDVRYVKTE FT EQDELGNYISGTIYKIGIMTRSCYVQLIASDHDVAVTLRTPFEILNERDYLYDTYRESI FT EKLLQKFMFDKINIIKSKQPQIVFLEPGEACLRMTTDNKMIVKVNATPKQIRLENVKLV FT IKIKYENVNSDVWDIIESQKALVLREPEVGECFSDMYKTVDSEAEAIKVIKHGLMNSLT FT FIETFGNLSKQIDDIEDETVRETMHDFLMNIKDTCLEGLENCKSIEEYDIFLAENGFDD FT TVELFEDLLKTQDSFENEYSPLFSEIVDRAKQYTRDLEGFKEILLMLKYSLINDASGFK FT SYRATGAHAVELMAKKHIEIGEFNLLGMIQLIKACETCHNNDSILNLASLRNVLSRTYA FT TLGRRINLNHELDLQNDLMEKSYDFKTLVLPDIKLSDMSREILKDNGFIISGENLKIDK FT SGEEFEGLANFNMLRLDEEEMYEGLIKEMKIKRKKKGFLFPANTLLLSELIKFLIGGIK FT GTSFDIETLLRNSFRPDTYSTDRLGRLSSSVPALKVYATVYMEYKNTSCPLNEIADSLE FT GFLKLTKSKAKEQFLDGRVKKALVQLRDEQSKSKKLEVYRNIADFLSRHPLCLSEKTLY FT GRYTYHDINDYIMQTREIILSKINELDDYVEMDDDDFLLGYLKGEEDAYDEDEESD" XX SQ Sequence 8876 BP; 2504 A; 1709 C; 1353 G; 3310 T; 0 other; agagcaatca ggtacaacta aaaatataat ctatctgcga ctagaaaatg aaagtaaact 60 taaaatgaat tgcttctgga gatattttac cagggtcctg catctatcct tttcaaggat 120 ggaagcagct agattgattt ctctaacttt gctatttcta attcactagg cagtgtgcac 180 agtctaatct gttgttattt taaatccaat aagttactta atcactttct tcatcttcat 240 cataagcatc ttcttctcct ttcagatagc cgagtagaaa atcatcgtca tccatctcaa 300 catagtcatc caattcattg atcttgctca gtatgatttc tcgtgtctgc ataatgtaat 360 cgttaatgtc atgatatgta tatctaccat acagtgtttt ctctgataga cacaaaggat 420 gtcttgataa aaaatcagct atatttctgt acacttcaag tttctttgac ttggactgtt 480 catcccttag ttgaactaga gcttttttga ctcgtccatc cagaaattgt tcctttgcct 540 tgcttttagt caatttcaga aatccctcta aactatctgc aatttcgttc agagggcagg 600 atgtattttt gtattccatg taaacagttg catacacctt tagtgccgga acactggaac 660 ttaatcttcc tagcctatca gtggaataag tgtcaggtct gaaactgttc ctcaataatg 720 tttcaatgtc aaagcttgtt cctttaatcc ctccaatcag aaactttatt aattcactaa 780 gaagtaaagt gttcgcagga aataagaagc ctttcttttt ccttttaatt ttcatttctt 840 ttatcaaacc ctcatacatc tcttcttcat ccaatctcaa catattgaaa ttggcaagac 900 cttcgaactc ttcccccgat ttatctattt tcaaattttc gcctgaaatg ataaatccat 960 tgtcctttag tatttctcta gacatgtctg acagtttgat gtcaggtaac accaatgtct 1020 taaaatcata gcttttctcc attagatcgt tctgtaaatc taattcatga ttcaagttta 1080 tgcgtcttcc tagtgtggca tatgttctgc tcaacacatt tctcaagctg gcaagattca 1140 atatagagtc attgttgtgg catgtctcac aggcttttat cagctgtatc atccctaaaa 1200 ggttaaactc accaatttct atgtgttttt ttgccatcaa ttctactgca tgtgcaccag 1260 tagctctgta actcttaaat ccagatgcat cattgatcag agaatattta agcataagta 1320 gtatttcttt aaatccttct aaatctctcg tgtactgctt agctctgtct acaatttcgg 1380 aaaacaatgg gctatattca ttttcaaaac tgtcttgtgt ctttaaaagg tcttcaaata 1440 actcaactgt atcatcgaaa ccgttttcgg ctaaaaaaat atcatattcc tcaatgcttt 1500 tacagttctc caatccttcc aggcaggtgt ctttgatgtt cattaaaaaa tcatgcatag 1560 tctctcttac agtttcatct tctatgtcat caatttgttt tgacaagttt ccaaaagtct 1620 caatgaaagt tagcgaattc atcaacccgt gtttgatcac tttgattgct tctgcttctg 1680 aatcaacagt tttatacatg tctgaaaagc attcacccac ttcaggttct ctcaaaacta 1740 aagctttctg actttctatt atgtcccata catctgaatt gacattttca tattttatct 1800 ttattaccaa tttaacattc tctaacctga tttgtttcgg tgtagcattc actttaacta 1860 tcattttgtt gtctgtggtc attcttaaac atgcttctcc aggctctaag aaaactattt 1920 gaggctgctt agacttgatt atatttattt tatcaaacat gaatttttgc aaaagctttt 1980 ctatgctctc tctgtatgta tcataaagat aatccctttc gttgagaatc tcaaagggtg 2040 ttctcaacgt aacggctaca tcatgatcag atgcaattag ttgcacatag cagcttctgg 2100 tcattatacc tattttgtat attgtcccag agatataatt gcctaattcg tcttgttctt 2160 ctgtttttac atatctgaca tcacttctcc ttatatatct tataacaaaa tccaaggttc 2220 tattagaaca cagacccatg ttccacagcc agacaacttg cttctgtata gtatttaact 2280 cactattatg agacaatatt acattggaca cagtaaatcc acttccagta gagttgttta 2340 ttttcctcat tttttcttct aagctttccc atataggttt gctgtccaaa cagatatttt 2400 gaagtattaa agagatgtct tctctggtta tagtggggaa aagagattgc aacttgtctg 2460 aaatatatac cgctgtgtca agtattttct ctaggttcat gtcctgctgt gcattcaaaa 2520 ctgttctaat agttttgtcc aatttgtaat tagctgtgga aacaaagtgg taagattctt 2580 ctttactata aatcgttgaa agcaacgcta aagtgtttga gatgaaccct ctacctaaat 2640 tgaatttaga ataaaaaggg aaacttttcc tggagaagca ggtgtttatt gctagcaatc 2700 tgttctgtgc tgttatcatg taattgcatg cttttacaag cctttgacaa ttgttggcat 2760 ttataaatgc ttctgtttca aaactgctgc ttccagacac aaaagatttt acatcatcca 2820 tcaaaaggtt ggtcccaaaa gtgcttgtca aaacatttat gctatcatca gtcagaggga 2880 tgttttttag ccctaaattc tcaatgtaat ttgacccata aattgcatgc atcaccacta 2940 aacctggaga tccttcaaca accggtatcc atttttcagt ttggaaccat ctgaaattgt 3000 aattgtctct tttcctcgat tcgcagggat atgctgcatc taatatcgga gtcaacatac 3060 tgaagttcac atcttttatc accaagttta tgcaagtttt gaaagagcaa taagagcctg 3120 gatcgaattt ctgcatttcc aaaattttct tttccatgtt ttcttcatag gtcattttca 3180 catgagaatc aatatctaca aatgttcttg ctttagatct caaaactctg tctaaggcta 3240 atttttctgt cgattgattg gatagttggt tccttttgga aggactggtg tacatgaata 3300 gttgactcag caaaaagtct ctgtcattta aaggagcaat taaaattgtt tcaggatttt 3360 gtatcataat gttgtgaacc gattccattt cagcacttga agccaccttc tcgtataatt 3420 catcttcttc taataacgaa tcttcattaa attttatttt tttggtgctc ttatacagat 3480 cctcattttt cttaagatta ggatataact ttgagaagtc tttgtaacta gacattttat 3540 tgagtgcatt ttcgttaata aattgaggta acttaatgat ctgtgttagc atggtttgga 3600 atttcattcc tattgtcaac acatctgagt cctcagatac tgatgctttc tcgaacaggt 3660 tgattagaaa gatcatcttt ttgtctttaa tttctaatgt tcttttcttg tgcttttcct 3720 ctaattcttt gaacctcatt tggagataac ctaatgtaga aacactgttc ttcacttcgt 3780 ctaaactttt tttattcaaa aagtctctta tgacattgta atagatgatt tgatcatttg 3840 aagaaggccc tagtattgat aagggttcta ttggagcagt caaccaccct cccatgtttg 3900 taggtatctc attgggcatc aaactaactc ccaacttctg gaaaattctt atgctatcat 3960 ttacttctcc tggaagcata gaatatatgc ttagtgcttg agcttgaaca gcaccatagg 4020 caaagggtat aacttcatta ggacaacctt tcctcaacaa catggtgaca tggatactca 4080 atgacattaa atcatcaaaa taactaatat gtgaagattc tgtgcaacag tttgccaaat 4140 gcctgcagta aagaggtata atggcaccat ttactattct ctcagaaata aattctactt 4200 cagaagagga agcataactc tttttaggat ttaatgttat acagaaactc ttaaagtgag 4260 cttctatact tcggaataac atttcaggca aagaagagct tgagaagtct agcagcattt 4320 tgtcaacctc tccattggct atcagtgatg ttgcattatc atctgaatga acaatccatc 4380 ttgtttggaa atcacaacct ttgtagcatt ctaaagtttt atggtaggcc ttcattgcac 4440 aggaatggta aactgaagat aagtaattca gattgccttg tagccaattc atactaactg 4500 gatatgtgtt tgtcgttaaa cctttagtta gaagacctat ggcagtttca ttttgtcgga 4560 aagtgctttg tgatttttta aggttcaaaa aaatatctgt tggtatacaa actttcttta 4620 atttcacata catcaacaag cattctacca tcaggctggc ttcacctgtt gttaaaacag 4680 gattcagcaa tatggctaga atgtatttat aagtgagatc agacgctgac cacttggact 4740 gatcagcaga aagaaatgct aatctagact tcctggaatt cttatttaaa atgtcattat 4800 aagaggttat cgtatcgaga gataaagttg acaatgctct gattttattg tctccactga 4860 tagatatagc ctctgatggg tcactctgag caatatgctt aaatgtatgt tctatgaaat 4920 aaagcatcat cttgactttc atgctcatta gatatatttc tctgtctgtt tttgttcttt 4980 gcatcttttc aaagacagat actaagaagt ctactgaccc tgtgacattt tttgctttag 5040 aaatgacaaa ttcaagcatc tgcaaaaaag tatgtttctt cccttctagc cctttcccaa 5100 gattcatgac agaatctatg tcaatctcca tcatgttatg aaattgttta accaaatcat 5160 aaagttcttc agatactttt tttgatttta atacggtcac attgtttctg taataaagct 5220 tagttttcaa atatgtttcc acagttaatg ggtggttgtt tcggataaat ttagatgtca 5280 tggactttct cacagtaaca gaaccactgg aaataatttc tttcagcttc tctagaaggt 5340 acaatgagtt cacacaattg tcttcaagga attctattag ccggtttttc tcttcattat 5400 aagttcttat aagtccttta ataatagcca acgtattccc tttccaattt ccgacgtcct 5460 ttacttttac tgtttgaaga cattctatta tatcatctgt atttattata tttgattgtg 5520 agcatttttt tgaagacttc aaagtggtta ttttataaca cggacttaag aaatcttctt 5580 tattctcgat ctctgatctc attaagccca cattttctac attttcaatg tagtaatcgg 5640 acaaagcttt tacattcaga agtccattaa tagaaaacaa atctttgtca tcaaacatgt 5700 cttttttagg gtatatgtct tcatagatag taaaccctag ctcttttcga aactttagtt 5760 cccactctgc tggtacatta agcaaacttg ttagattatg tacatggtta tgcaatgatt 5820 ttggcatcat gtaaattgct aaatacacat tattgtataa atcttctaat gtaagcaaag 5880 tggaacctgt tattggacat tttatgttta aattagttat acctccaatg acatcatttt 5940 catgatctac tacaacaggt tttgcattgg tgcttaaatt gaggttttcc attctaaata 6000 acaacttttt tattccattc acaaaataga tgtctgctac atttgtaatg tctggatcaa 6060 acttatctct aatatattct tttatattag aataatcgga tagtggcaag aacccagcat 6120 atctcatgaa atcgaaaatt cccattcgac taagcttagt tacagtccct atcatcaccg 6180 atgaaaacac tatatttatt aatatctgct ttactgtcac agacatggag aagacattca 6240 ccttttctgt gtctttgttc ttcaaccact tttctagctc actggctttt tttgaaaact 6300 gagcaaaaca aaccggaact ttactaggag atttgaaaag acttagcaat ctcacttgat 6360 ttaatctttg tggcctcatg atatatatat aattgcttcc actacggaaa taactataga 6420 tttctttggt gtagcatata ttgaactgtt ctgacatatc ttcatccaca atatgcaatg 6480 ctatatacgg gactcctgaa ccacctgtgt tcattccatc acctttaaaa gctagcaaaa 6540 tcatgctagt attggcagca gtcagtattt taaagctctc tttggtcata tacctatcag 6600 ctaccattaa tcctttagca aactgcatca tgtcctctga gtaatggtat attgccaagt 6660 cgttacacaa tttatttatt ttcttacaag tttccatttc tgtctttaga acagaatctt 6720 gggtatacaa gcattctgga tttttggcat aattgttgta aacggaagct atcttacctt 6780 cttctcttat atcaccattg tgtaacacga ataatgaatc cttgatcttc tcacaccagc 6840 ttaagctttc ctcattgtcg tgccgtatca atttcttcat gtgggttaaa gaagccatgt 6900 ccacactagt gtaatcatcg tttggatcag tctgcctgac agatgtgtcg tattctaatc 6960 ctttagagat cctttccttt atctcttctt tttttagtat tctttttttc gaactcattc 7020 ctatgttcat aaccgccaag cctttaaagt aaacagcttt attttctttc cctgtgtctt 7080 tcatgcagaa ttcatttttg tttctagtta agcaagaacc atgcttgcac cattcttgag 7140 attttttagt tcgttcgact tttatacttc cagtgttgat gtctatttca tcttccagtt 7200 cttgcttgtt gaattttgtt gtatcgcagc ttagttctgt caagcaaagt ttaactaaat 7260 ttgtaacatc tcttgcttta ttagtctgat tgtgaacaga gctgtatgga ctattataag 7320 tgattctaga tgttgtttgg aaactgtctc tgaatttctt aatgatggcg ttattataat 7380 caatgttgga atttaattca actttttcaa agctaggaga ccaagtcata gaaaaatttg 7440 tctttgtctc agacagatca tttgtaaagc aattagggta tttttcttca tattctacag 7500 cattttgatt gaaagctgtt gtgatgtcag gtatttctct ctctttgctt ttctttttct 7560 ttatcctctg taggattttg tctaaatgtt taccatacag agactcccaa acattctgag 7620 tttgaattaa atgatctttc aaatctgata agtcagtctt cggaacaact ttcagattta 7680 aacatgcatc ttggtatcct ttaaatctgt cggcaatgtg ctgatcgttc atggtttcta 7740 tgtggtaaca aaagttccca aataagaaat gaactatttc atcctttgtt atctcttctg 7800 ttgttaaaga ttctatgatc ctttctatat cttcagaata tgcaatttct gtgggatttc 7860 tgtctttata tttgctagcc cagtggctga aaaacacatc ttttgatcca aaatcatcac 7920 ccaatatccc tctgacttca gatttgagtt tctgagtatt ggcataataa tttctgacta 7980 cagttggcgt tgtcccaaca atcattccta catgataaat gttcagtaac ttagcatttt 8040 tggcaagctt tgatctctct ccatgcaatg cagagggtga atcttcatat tttcctaaaa 8100 ctctactgct ggtgacagtt attggcattc ctcccatagg cttcaaaatg actattgtga 8160 taaagactgg atgatcttcc aaaaagggtt ttccattgac tttaatgtct ttgaatgatt 8220 tccagatgtt tttgtaatat ttttccatgg tttttgtttc agtttttgca tctacagaaa 8280 tcttccagtc atagatcatc aaacatagtt cgctgttctt cgattcctta tatatgacat 8340 aattgtcagg tgtagcatta gttgccacat actctttgtt gatcctttca aactcatcat 8400 tgctgagact atttatgcat tgtttcttgt tcagttcctc cagatagtct ctcaatgcta 8460 gctctatttc cacctcactc ctttgcttcg gcttgatcct caaatgtcta gacaccagtt 8520 ctccaaataa atcatgcctt gagagttctg tttctaggta tttctgttca aacagagaca 8580 ccagttcatt aagtttttta acatctactg ttgccattcc tgtgttcaga ccttccccat 8640 cagtagaaat cttcacaata agctctctca tagtctcata attttttgca ttgttattta 8700 ttataacatc ttcaggaatc tcatcactat tccttttgtg caggtctaat gctagaccat 8760 ggttagaacc tacacagtcc tcaatggata gtaatagagt ggtcccgttt tctattaact 8820 ttcttatttt ctgaatattc attttttgct taaaatcgtt gttacctgat tgctct 8876 //