ID HQ644140; SV 1; linear; genomic RNA; STD; VRL; 3067 BP. XX AC HQ644140; XX DT 26-APR-2011 (Rel. 108, Created) DT 01-MAY-2011 (Rel. 108, Last updated, Version 2) XX DE Groundnut ringspot and Tomato chlorotic spot virus reassortant segment S, DE complete sequence. XX KW . XX OS Groundnut ringspot and Tomato chlorotic spot virus reassortant OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Tospoviridae; unclassified Tospoviridae. XX RN [1] RP 1-3067 RX DOI; 10.1016/j.virol.2011.02.011. RX PUBMED; 21382631. RA Webster C.G., Reitz S.R., Perry K.L., Adkins S.; RT "A natural M RNA reassortant arising from two species of plant- and RT insect-infecting bunyaviruses and comparison of its sequence and biological RT properties to parental species"; RL Virology 413(2):216-225(2011). XX RN [2] RP 1-3067 RA Vanderspool C., Webster C.G., Adkins S.; RT ; RL Submitted (22-NOV-2010) to the INSDC. RL Agricultural Research Service, United States Horticultural Research RL Laboratory, 2001 South Rock Road, Fort Pierce, FL 34945, USA XX DR MD5; 8f1a0b120d77f3bdb967f3f1cf8b9b82. XX FH Key Location/Qualifiers FH FT source 1..3067 FT /organism="Groundnut ringspot and Tomato chlorotic spot FT virus reassortant" FT /segment="S" FT /host="Solanum lycopersicum" FT /isolate="LGMTSG" FT /mol_type="genomic RNA" FT /country="USA:FL" FT /collection_date="Feb-2010" FT /db_xref="taxon:1027232" FT gene 88..1491 FT /gene="NSs" FT CDS 88..1491 FT /codon_start=1 FT /gene="NSs" FT /product="nonstructural silencing protein" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:F5B5X9" FT /protein_id="AEB90408.1" FT /translation="MSSGVYESIIQTKASVWGSTASGKSIVDSYWIYEFPTGSPLVQTQ FT LYSDSRSKSSFGYTSKIGDIPAVEEEILSQNVHIPVFDDIDFSININDSFLAISVCSNT FT VNTNGVKHQGHLKVLSLAQLHPFEPVMSRSEIASRFRLQEEDIIPDDKYISAANKGSLS FT CVKEHTYKVEMSHNQALGKVNVLSPNRNVHEWLYSFKPNFNQIESNNRTVNSLAVKSLL FT MATENNIMPNSQAFVKASTDSHFKLSLWLRIPKVLKQIAIQKLFKFAGDETGKSFYLSI FT ACIPNHNSVETALNVTVICKHQLPIPKSKAPFELSMIFSDLKEPYNTVHDPSYPQRIVH FT ALLETHTSFAQVLCNKLQEDVIIYTINSPELTPAKLDLGERTLNYSEDASKKKYFLSKT FT LECLPVNVQTMSYLDSIQIPSWKIDFARGEIRISPQSTPIARSLLKLDLSKIKEKKSLT FT WETSSYDLE" FT gene complement(2140..2916) FT /gene="N" FT CDS complement(2140..2916) FT /codon_start=1 FT /gene="N" FT /product="nucleocapsid protein" FT /db_xref="GOA:F5B5Y0" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:F5B5Y0" FT /protein_id="AEB90407.1" FT /translation="MSKVKLTKENIVSLLTQSEDVEFEEDQNQVAFNFKTFCQENLDLI FT KKMSITSCLTFLKNRQSIMKVVNQSDFTFGKVTIKKNSERVGAKDMTFRRLDSMIRVKL FT IEETANNENLAIIKAKIASHPLVQAYGLPLADAKSVRLAIMLGGSIPLIASVDSFEMIS FT VVLAIYQDAKYKELGIEPTKYNTKEALGKVCTVLKSKGFTMDDAQINKGKEYAKILSSC FT NPNAKGSIAMDYYSDNLDKFYEMFGVKKEAKIAGVA" XX SQ Sequence 3067 BP; 929 A; 583 C; 518 G; 1037 T; 0 other; agagcaattg tgtcattttt tattctaaat cgaacctcaa ctagcaaatc tcagaactgt 60 aataagcaca agagcacaag agccacaatg tcatcaggtg tttatgaatc gatcattcag 120 acaaaggctt cagtttgggg atcgacagca tctggtaagt ccatcgtgga ttcttactgg 180 atttatgagt ttccaactgg ttctccattg gttcaaactc agttgtactc tgattcgagg 240 agcaaaagta gcttcggcta cacttcaaaa attggtgata ttcctgctgt agaggaggaa 300 attttatctc agaacgttca tatcccagtg tttgatgata ttgatttcag catcaatatc 360 aatgattctt ttttggcaat ttctgtttgt tccaacacag ttaacactaa tggagtgaag 420 catcagggtc atcttaaggt cctttctctt gcccaattgc atccctttga acctgtgatg 480 agcaggtcag agattgctag cagattccgg ctccaagaag aagatataat tcctgatgac 540 aaatatatat ctgctgctaa caagggatct ctctcctgtg tcaaggaaca tacttacaaa 600 gtcgaaatga gccacaatca ggctttaggc aaagtgaatg ttctttctcc taacagaaat 660 gttcatgagt ggctgtatag tttcaaacca aatttcaacc agatcgaaag taacaacagg 720 actgtaaatt ctcttgcagt caaatctttg ctcatggcta cagaaaacaa cattatgcct 780 aactctcaag cttttgttaa agcttctact gattctcatt ttaagttgag cctttggctg 840 agaattccaa aagttttgaa gcaaatagcc atacagaagc tcttcaagtt tgcaggagat 900 gaaaccggta aaagtttcta tttgtctatt gcatgcatcc caaatcataa cagtgtagaa 960 acagctttaa atgttactgt tatatgtaaa catcagcttc caatccctaa gtccaaagct 1020 ccttttgaat tatcaatgat tttctccgat ctgaaagagc cttacaacac tgtgcatgat 1080 ccttcatacc ctcaaaggat tgttcatgct ttgcttgaaa ctcacacttc ctttgcacaa 1140 gttctttgca acaagctgca agaagatgtg atcatatata ctataaacag ccctgaacta 1200 accccagcta agctggatct aggtgaaaga accttgaact acagtgaaga tgcttcgaag 1260 aagaagtatt ttctttcaaa aacactcgaa tgcttgccag taaatgtgca gactatgtct 1320 tatttggata gcatccagat tccttcatgg aagatagatt ttgccagagg agagatcaga 1380 atctcccctc aatctactcc tattgcaaga tctttgctca agctggattt gagcaagatc 1440 aaggaaaaga agtccttgac ttgggaaaca tccagctatg atctagaata aaagtggctc 1500 atactgcttc aagtagtgtt tgtcaacttg cttatccttt atgttgttta tttcttttaa 1560 atctaaagta agttagattc aagtagttta gtatgctata gtattattac aagaaaatac 1620 aaaaaatacg aaaaaataca aaaaatatat aaaaaaccaa aaagatcccg aaagggacaa 1680 tttggttgat ttactctgtt ttaggcttat ctaagctgct tttgtttgag caaaataaca 1740 ttgtaacatg caataactgg aatttaaagt cctaaaagaa gtttcaaagg acagcttagc 1800 caaatttggt ttttgtttgt tttttgtttt ttgttttttg tttttttgtt ttatttttat 1860 ttttagttta tttttatttt ttattttttt gtttttgtta tttttatttt attttatttt 1920 cttttatttt atttatatat atatcaaaca caatccacac aaataatttt aatttaaaac 1980 attctactga tttaacacac ttagcctgac tttatcacac ttaacacgct tagtcaggct 2040 ttaacacact gaactgaatt aaaacacact tagtattatg catctcttaa ttaacacact 2100 ttaataatat gcatctctga atcagcctta aagaagcttt tatgcaacac cagcaatttt 2160 ggcctctttc ttgactccaa acatttcata gaatttgtca agattgtcac tgtaatagtc 2220 catagcaatg cttcccttag cattgggatt gcaagaacta agtatcttgg catattcttt 2280 ccctttgttt atctgtgcat catccattgt aaatcctttg cttttaagca ctgtgcaaac 2340 cttccccaga gcttccttag tgttgtactt agttggttca atccctaact ccttgtactt 2400 tgcatcttga tatatggcaa gaacaacact gatcatttcg aagctgtcaa cagaagcaat 2460 gagagggata ctacctccaa gcattatagc aagtcttaca gattttgcat ctgccagagg 2520 cagcccgtaa gcttggacca aagggtggga ggcaattttt gccttgataa tagcaagatt 2580 ctcattgttt gcagtctctt ctatgagctt cactcttatc atgctatcaa gcctcctgaa 2640 agtcatatct ttagctccaa ctctctcaga atttttcttt atcgtgacct taccaaaagt 2700 aaaatcactc tggttcacaa ctttcataat gctttgacga ttcttcaaga aagtcaaaca 2760 tgaagtgata ctcattttct taatcaggtc aagattttcc tgacagaaag tcttgaagtt 2820 gaatgcgacc tggttttggt cttcttcaaa ctcaacatct tcagattgag ttaaaagaga 2880 gacaatgttt tcttttgtga gcttgacctt agacatggtg gcagtttaga tctagacctt 2940 tcccgagaga taagattcaa ggtgagaaag tgtaacactg tagaccgcgg tcgttactta 3000 tcctgttaat gtgatgattt gtattgctga gtattaggtt tttgaataaa attgacacaa 3060 ttgctct 3067 //