ID   HQ611271; SV 1; linear; genomic RNA; STD; VRL; 2205 BP.
XX
AC   HQ611271;
XX
DT   26-JUN-2011 (Rel. 109, Created)
DT   17-AUG-2011 (Rel. 109, Last updated, Version 2)
XX
DE   Cowpea chlorotic mottle virus isolate Car2 segment RNA3, complete sequence.
XX
KW   .
XX
OS   Cowpea chlorotic mottle virus
OC   Viruses; Riboviria; Bromoviridae; Bromovirus.
XX
RN   [1]
RP   1-2205
RX   DOI; 10.1007/s11262-011-0613-9.
RX   PUBMED; 21537997.
RA   Ali A., Shafiekhani M., Olsen J.;
RT   "Molecular characterization of the complete genomes of two new field
RT   isolates of Cowpea chlorotic mottle virus, and their phylogenetic
RT   analysis";
RL   Virus Genes 43(1):120-129(2011).
XX
RN   [2]
RP   1-2205
RA   Ali A., Shafiekhani M., Olsen J.;
RT   ;
RL   Submitted (15-NOV-2010) to the INSDC.
RL   Biological Science, University of Tulsa, 800 S Tucker Dr, Tulsa, OK 74104,
RL   USA
XX
DR   MD5; b5710ecff9a8730bc1858f7394cbcf23.
DR   RFAM; RF01084; TLS-PK3.
XX
CC   GenBank Accession Numbers HQ611269-HQ611271 represent the complete
CC   genome of Cowpea chlorotic mottle virus isolate Car2.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2205
FT                   /organism="Cowpea chlorotic mottle virus"
FT                   /segment="RNA3"
FT                   /host="cowpea"
FT                   /isolate="Car2"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /proviral
FT                   /db_xref="taxon:12303"
FT   CDS             239..1147
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /note="MP"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:F8S8Q0"
FT                   /protein_id="AEI54614.1"
FT                   /translation="MSNSTFRPFTGSSRTVVEGEQAGAQDDMSLLQSLFSDKSREEFAK
FT                   ECKLGMYTNLSSNNRLNYIDLVPKNTGSRALNLFKSEYEKGHIPSSGVLSIPRVLVFLV
FT                   RTTTVTESGSVTIRLVDLISASSVEILEPVDGTQEATIPISSLPAIVCFSPSYDCPMQM
FT                   IGNRHRCFGLVTQLDGVISSGSTVVMSHAYWSANFRSKPNNYKQYAPMYKYVEPFDRLK
FT                   RLSRKQLKNYVRGITNQSVNHGYLLGKPLLKTDEQDPEMIELEEESLTPTDSNGVGKEK
FT                   IAVTAKSVAGLPTASMSIKRR"
FT   CDS             1392..1964
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:F8S8Q5"
FT                   /db_xref="InterPro:IPR002009"
FT                   /db_xref="UniProtKB/TrEMBL:F8S8Q5"
FT                   /protein_id="AEI54615.1"
FT                   /translation="MSTVGTGKLTRAQRRAAARKNKRNTRVVQPVIVKPIASGQGKAIK
FT                   AWAGYSVSKWTASCAAAEAKVTSAITISLPNELSSERNKQLKVGRVLLWLGLLPSVSGT
FT                   VKSCVTETQTTAAASFQVALAVADNSKDVVAAMYPEAFKGITLEQLAADLTIYLYSSAA
FT                   LTEGDVIVHLEVEHVRPTFDDSFTPVY"
XX
SQ   Sequence 2205 BP; 640 A; 457 C; 525 G; 583 T; 0 other;
     gtaatcttta ccaaacaact ttcaaacttt atagtttatg tagttgctgt gattcccgtg        60
     agcagcgttt agattactaa cttggacaca ccggtttttg aagcatcgga cagaggtgat       120
     taacgctaaa ccgtaccata gtaggctgtt acctggctcg aacccaggcg gacgtcagct       180
     gacattcacg gaatagttcg atatcataat tcctcgttct ttgctgtaat agctcccgat       240
     gtctaactct acttttagac cttttactgg ttcctccagg accgtggtcg agggagaaca       300
     agccggcgcc caggatgata tgtcgttgtt acagtcactt ttttccgaca aatccaggga       360
     ggagtttgct aaggagtgta agttgggtat gtataccaac ttatcctcca ataatcggct       420
     taattatata gatctagtcc ccaagaacac tggtagtaga gctctgaact tatttaagtc       480
     agagtatgaa aaaggtcata ttccctccag cggtgtgcta agtataccta gagtgctggt       540
     ttttcttgtg aggacgacaa cagtgactga atctgggagt gtcaccatta gattggttga       600
     cttgataagc gcttcgtcgg ttgaaattct agaaccagtg gacggtacgc aagaagctac       660
     cattcctatt tctagtcttc cggctatcgt ttgtttttct cctagttatg actgtcccat       720
     gcagatgata gggaatagac acagatgttt cggtttggta actcaactgg atggtgtcat       780
     atcctcaggg tctaccgtcg ttatgagtca tgcgtattgg tctgcgaact ttcgtagtaa       840
     acctaacaac tacaagcagt acgcgcctat gtataagtat gtggaaccct ttgacaggtt       900
     gaaacgtttg agtcgtaaac aattgaaaaa ttatgttagg ggcataacga atcaatctgt       960
     aaatcatggt tatctattgg gtaaaccact actgaagact gacgagcaag atccagagat      1020
     gattgagtta gaggaggaat cactaacccc taccgacagc aacggagtcg gcaaggaaaa      1080
     aatcgctgtg accgctaaat ccgttgcggg gcttccgacg gcctcgatgt ctatcaaacg      1140
     tagatagcta gatcagttgc taacagactt agtgtcatgg gagcaaaact catatgaggt      1200
     cattgaaaca tgaattggga agaaccagaa cccgccgaaa ggacaggctg ggggcgtacg      1260
     attcatgcgt agttggctgg gtatgagaca caaaaaaaaa aaaaaaaaaa aaaaaaaaaa      1320
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaatctatgt ttaatttgat      1380
     agtaatatat catgtctaca gtcggaacag ggaagttaac tcgtgcacaa cgaagggctg      1440
     cggcccgtaa aaacaagcgg aacactcgtg tggtccaacc tgttattgta aaacccatcg      1500
     cttcaggcca aggcaaggct attaaagcgt gggctggtta cagcgtatcg aagtggaccg      1560
     cctcatgtgc ggctgccgaa gctaaagtaa cctcggctat aactatttct cttcctaacg      1620
     agctatcatc cgaaaggaat aaacagctca aggtggggag agttttatta tggcttgggt      1680
     tgcttcccag tgtcagtggt acggtgaaat cctgtgtcac agagacgcag actacagctg      1740
     ctgcttcctt tcaggtggca ttagccgtgg ccgacaactc gaaagatgtt gtcgctgcta      1800
     tgtaccccga ggcgtttaag ggcataaccc ttgaacaact cgctgcagat ttaacgatct      1860
     acttgtacag cagtgcggct ctcactgagg gcgacgtcat cgtgcatttg gaggttgagc      1920
     acgtcagacc tacgtttgac gactcgttca ctccggtgta ttagtgcccg ctgaagagcg      1980
     ttacactagt gtggcctact tgaaggctag ttataaccgt ttctttaaac ggtaatcgtt      2040
     gttgaaacgt cttcctctta caagaggatt gagctgccct tgagttttac tccttgaact      2100
     cttcggaaga attcttcgga attcgtacca gtacctcaca tagtgaggtg ataagactgg      2160
     tgggcagtgc ctagtcgaaa gactaggtga tctctaagga gacca                      2205
//