ID HQ611270; SV 1; linear; genomic RNA; STD; VRL; 2771 BP. XX AC HQ611270; XX DT 26-JUN-2011 (Rel. 109, Created) DT 17-AUG-2011 (Rel. 109, Last updated, Version 2) XX DE Cowpea chlorotic mottle virus isolate Car2 segment RNA2, complete sequence. XX KW . XX OS Cowpea chlorotic mottle virus OC Viruses; Riboviria; Bromoviridae; Bromovirus. XX RN [1] RP 1-2771 RX DOI; 10.1007/s11262-011-0613-9. RX PUBMED; 21537997. RA Ali A., Shafiekhani M., Olsen J.; RT "Molecular characterization of the complete genomes of two new field RT isolates of Cowpea chlorotic mottle virus, and their phylogenetic RT analysis"; RL Virus Genes 43(1):120-129(2011). XX RN [2] RP 1-2771 RA Ali A., Shafiekhani M., Olsen J.; RT ; RL Submitted (15-NOV-2010) to the INSDC. RL Biological Science, University of Tulsa, 800 S Tucker Dr, Tulsa, OK 74104, RL USA XX DR MD5; e37b84b0d8eaeb935f926142d39c29b2. DR RFAM; RF01084; TLS-PK3. XX CC GenBank Accession Numbers HQ611269-HQ611271 represent the complete CC genome of Cowpea chlorotic mottle virus isolate Car2. XX FH Key Location/Qualifiers FH FT source 1..2771 FT /organism="Cowpea chlorotic mottle virus" FT /segment="RNA2" FT /host="cowpea" FT /isolate="Car2" FT /mol_type="genomic RNA" FT /country="USA" FT /proviral FT /db_xref="taxon:12303" FT CDS 107..2533 FT /codon_start=1 FT /product="2a protein" FT /db_xref="GOA:F8S8Q3" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR007610" FT /db_xref="UniProtKB/TrEMBL:F8S8Q3" FT /protein_id="AEI54613.1" FT /translation="MSKFIPEGETYHIPSFQWMFDQTLESDSHHDEAIFVTESINESGV FT DTSVEITADGTLASYMHAVKPLEKDGLLNPPFDQARWGLCCKNVVDVYDGLLGYRLIPM FT AEAARMLYLEIDGSFVDESECDDWRPVDTSDGFTEAMFDVMNEIPGEETKHTCALSLEA FT ESRQAPETSDMVPSEYTLADRYVTTREEFASIDSDYDISLNLVSPVEFRVGVCEDTYRH FT SEADDPTMPQYHDRISLKSLEAAGHHMLPTHAYFDDTYYQALEELGDYNVDISKLSVRQ FT SDVDWYRDPEKYYEPELSIGSFQRRIGTQKTVLTALKKRNADVPELADSVDIKRVACEV FT AEKFKRAYLNHSGIGLLGQSMDVMSRGLEYHKKWKDHKDLTGVTVLSEINLQRYQHMIK FT SDIKPVVSDTLHLERAVAATITFHGKGVTSCFSPYFTACFEKFSKALKSRFVVPIGKIS FT SLELKNVPLSNKWFLEADLSKFDKSQGELHLEFQREILLSLGFPAPLTNWWCDFHRESM FT LSDPHAGVNMPVSFQRRTGDAFTYFGNTLVTMAMMAYCCDMDAVDCAIFSGDDSLLICK FT SKPHLDANVFQSLFNMEIKVMDPSLPYVCSKFLLETEMNNLVSVPDPMREIQRLAKRKI FT IKSPELLRAHFESFCDRMKFLNKLDEKMINLLCKFVALKYKKPDVENDVRVAIAAFGYY FT SENFLRFCECYATEGVNIYKVKHPITQEWFEASRDRDGDWFHDWRNPKFPTALDKVWRF FT FGKYAKDDPMKHIEERDRGHRLNRAMNSSLKLAYDRRSLGKDKEAVAWVRKTLSK" XX SQ Sequence 2771 BP; 776 A; 533 C; 654 G; 808 T; 0 other; gtaatccacg agaacgaggt tcaatccctt gtcgactcac ggagttccat cagttgaaat 60 agtttgtact tttcatcttg atattatttt ctttacttcc attaatatgt ctaagttcat 120 tccagaaggt gagacttacc acattccctc attccaatgg atgtttgatc agactctcga 180 atctgactca caccatgatg aggcgatatt cgtaacagaa tcgattaatg aaagtggagt 240 tgatacttct gttgaaataa ccgcagacgg cacgcttgca agttacatgc acgccgtaaa 300 gcccctagag aaggatggtc ttctgaatcc tccttttgat caagctagat ggggtctttg 360 ctgcaagaac gtcgttgacg tttatgacgg gctgctcggt tatagactca taccaatggc 420 tgaagccgct aggatgttat acttagaaat tgacggttct ttcgtcgatg aatctgagtg 480 tgatgactgg cgaccggtag atacctctga tggttttacc gaagcaatgt ttgatgtgat 540 gaatgagatt cctggcgagg aaacaaaaca tacatgcgct ttaagtcttg aagctgaatc 600 aaggcaagct ccagaaactt ccgatatggt accgtctgaa tatacgttgg cagacaggta 660 cgttaccacc agagaggaat tcgcgtctat agattcggat tatgacatat ccttaaacct 720 ggtgagccct gtggagttca gggtgggagt gtgtgaagac acataccgtc attcggaagc 780 tgatgatcct acgatgcctc aatatcacga taggatcagt ttaaaatcgc tggaggcggc 840 tggccatcac atgttaccga ctcatgccta ttttgacgac acttactacc aggcgttgga 900 agagctaggc gactataatg tcgatattag taagttgtcg gtccggcaga gtgatgttga 960 ttggtatcga gaccctgaaa agtactatga gcccgagtta agtatagggt cattccaacg 1020 taggataggt acacaaaaga cggtccttac cgcgctgaag aaacggaacg ctgacgtacc 1080 tgagttagct gattctgttg atatcaaaag agtagcctgt gaagtagctg aaaaatttaa 1140 acgggcttat ctcaatcatt ccggtatagg gctgttaggg caaagtatgg atgtcatgtc 1200 cagaggactt gagtaccata aaaaatggaa agatcacaaa gacctgactg gtgtgacagt 1260 tttgtctgaa atcaatttgc agaggtatca gcacatgata aagtctgata tcaaaccagt 1320 tgtttcggat acgttacacc tcgaacgagc tgttgctgca actataacgt ttcatggtaa 1380 aggagttact agctgcttct caccatattt cacggcttgt ttcgagaagt tttcaaaagc 1440 tttaaaatca aggtttgtgg tccccatagg gaagatctcc tccctggaac tgaaaaacgt 1500 tcccctctcg aataaatggt ttcttgaggc ggatttgagt aagtttgata aatctcaggg 1560 tgagcttcat cttgagttcc aaagagagat attgttgtca ttgggttttc cagccccttt 1620 gactaattgg tggtgtgatt tccataggga atctatgcta tcggatcctc atgctggagt 1680 taacatgccg gtctcatttc agcgtcgtac tggtgacgct tttacttatt ttgggaacac 1740 attagtgaca atggctatga tggcttattg ttgcgacatg gatgctgtgg attgtgctat 1800 tttttccggc gatgattccc tgttaatttg taagagcaaa ccacacctgg atgctaatgt 1860 ttttcaatct ctgtttaata tggaaattaa ggttatggac ccaagtttgc catacgtctg 1920 tagtaagttt ctcttagaaa ctgaaatgaa taatttggtg tccgtgcctg accctatgag 1980 agagatacag agactggcta agcgaaagat cattaaatcg cctgagttgt taagagccca 2040 ctttgagtcc ttttgtgata ggatgaaatt cctaaacaaa ttggatgaaa aaatgataaa 2100 tttattatgc aagtttgtgg ctctcaagta caaaaaacct gacgttgaaa acgatgtcag 2160 agtagccatt gctgctttcg gctactactc agaaaatttt ttgagatttt gcgaatgtta 2220 cgcgactgaa ggggtcaata tatataaggt aaaacatccc atcacccagg agtggttcga 2280 ggcctctagg gatcgagacg gtgactggtt ccatgactgg cgtaacccga agtttcccac 2340 tgccttagat aaggtttgga gattctttgg aaaatacgca aaagatgatc ctatgaaaca 2400 catagaagag agagataggg gacataggct caatcgagcc atgaattctt ccttgaaact 2460 tgcctatgat cgtaggagtc ttggtaagga taaagaagcc gttgcgtggg tgcgtaagac 2520 cctttctaaa taatgttggt cacattaaag acttgtttag tccacattag gactggtttt 2580 aacagtttcc ttaaactgta atcgtcgttg cgacgttgat ttgcttacaa gcaatcaagc 2640 tgcctttggg ttttactcct tgaacccttc agaagaattc ttcggagttc gtaccagtac 2700 ctcacatagt gaggtaataa gactggtggg cagtgcctag tcgaaagact aggtgatctc 2760 taaggagacc a 2771 //