ID HQ611269; SV 1; linear; genomic RNA; STD; VRL; 3174 BP. XX AC HQ611269; XX DT 26-JUN-2011 (Rel. 109, Created) DT 17-AUG-2011 (Rel. 109, Last updated, Version 2) XX DE Cowpea chlorotic mottle virus isolate Car2 segment RNA1, complete sequence. XX KW . XX OS Cowpea chlorotic mottle virus OC Viruses; Riboviria; Bromoviridae; Bromovirus. XX RN [1] RP 1-3174 RX DOI; 10.1007/s11262-011-0613-9. RX PUBMED; 21537997. RA Ali A., Shafiekhani M., Olsen J.; RT "Molecular characterization of the complete genomes of two new field RT isolates of Cowpea chlorotic mottle virus, and their phylogenetic RT analysis"; RL Virus Genes 43(1):120-129(2011). XX RN [2] RP 1-3174 RA Ali A., Shafiekhani M., Olsen J.; RT ; RL Submitted (15-NOV-2010) to the INSDC. RL Biological Science, University of Tulsa, 800 S Tucker Dr, Tulsa, OK 74104, RL USA XX DR MD5; e216d6fef527038037ad506f8059bb57. DR RFAM; RF01084; TLS-PK3. XX CC GenBank Accession Numbers HQ611269-HQ611271 represent the complete CC genome of Cowpea chlorotic mottle virus isolate Car2. XX FH Key Location/Qualifiers FH FT source 1..3174 FT /organism="Cowpea chlorotic mottle virus" FT /segment="RNA1" FT /host="cowpea" FT /isolate="Car2" FT /mol_type="genomic RNA" FT /country="USA" FT /proviral FT /db_xref="taxon:12303" FT CDS 71..2950 FT /codon_start=1 FT /product="1a protein" FT /db_xref="GOA:F8S8Q2" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:F8S8Q2" FT /protein_id="AEI54612.1" FT /translation="MASSLDLLKLISERGADSRGASDIVEQQAVKQLLEQVDYSKRSKK FT INIRNKLTPDEENAFRARYGGAFDLNLTQQYNAPHSLAGALRIAEHYDCLSSFPPLDPI FT IDFGGSWWHHYSRKDTRIHSCCPVLGVRDAARHEERLCRMRKLLQECDDREDLPDFCID FT RAESCSVQADWAICIHGGYDMGFTGLCEAMHSHGVRILRGTIMFDGAMLFDNEGVLPLL FT KCRWMKSGKGKSEVIKFDFMNGSTLSYIHSWANLGSFLTESVHVIGGTTYLLERELLKC FT NIMTYKIVATNLKCPKETLRHCVWFENISQYVAVNIPEDWNLTHWKPVRVAKTTVREVE FT EIAFRCFKENKEWTENMKAIASILSAKSSTVIINGQAIMAGERLNIDEYHLVAFALTMN FT LYQKYENIRNFYSEMEWKGWVNHFKTRFWWGGSTATSSTGKIREFLAGKFPWLRLDSYK FT DSFVFLSKISDVKEFENDSVPISRLRSFFSSEDLMERIELELESAQKRRREKKKKEAEK FT IDEEEFQDAIDIPNDAVRDDVKPEKEPKPEVTVGAEPTGPEEASRHFAIKEFSDYCRRL FT DANAVSNLRRLWAIAGCDGRTARNKSILETYHRVDDMINLHYPGGQWLYPKKYDYEVGY FT NDSGLGPKFDDELYVVDKSCICANYQVLSKNTDSLKAPSCKISLCDGVAGCGKTTAIKS FT AFNIAEDLVVTANKKSAEDVREALFPENPSSEIALSYKGPADSALMHGLPQCKRLLVDE FT AGLLHYGQLLAVAALCKCQSFLAFGDTEQISFKSRDATFRLKYGDLQFDSRDIVTETWR FT CPQDVISAVQTLKKKAGNRTSKYLGWKSHSKVSRSISHKEIASPLQVTLSREKFYLTMT FT QADKAALVSRAKDFPELDKAWIEKHIKTVHEAQGVSVDHAVLVRLKSTKCDLFKTEEYC FT LVALTRHKVTFEYLYVGMLSGDLIFRSIS" XX SQ Sequence 3174 BP; 882 A; 595 C; 779 G; 918 T; 0 other; gtaatccacg agaacgaggt tcaatccctt gtcgactcac ggagtatcga acttttctaa 60 attttattta atggcaagtt ctttagatct tttgaaattg atttctgaga gaggcgctga 120 cagccgaggc gcttcggaca tagttgaaca acaagctgta aagcaattgc ttgagcaagt 180 tgactactcg aaaaggtcca agaaaatcaa tattagaaat aaactcacgc ccgatgaaga 240 gaatgctttc cgggcgcgct atggtggagc ttttgatttg aatttaactc aacaatataa 300 tgctccccat agtttggctg gagctctgcg aatagcggag cattatgact gtctttcaag 360 ttttccccct cttgatccca tcatcgattt tggtggttct tggtggcacc attattccag 420 gaaggacacg cgtattcaca gttgttgtcc agtgttgggt gtcagagatg ctgctcgaca 480 tgaagaacga ctatgtagaa tgcgtaagtt gttacaagaa tgcgacgaca gagaagatct 540 accagatttc tgtattgaca gagctgaatc ctgtagtgtc caggctgatt gggctatatg 600 tattcatggt ggttatgaca tgggttttac aggtttatgt gaggccatgc attcccacgg 660 agtgcgtatt ttacggggta ctattatgtt cgacggtgct atgctgtttg acaacgaagg 720 tgtgttacct ttgttgaagt gccgttggat gaaatctgga aaaggtaaat ctgaggtcat 780 taaatttgat ttcatgaatg ggagcacact ttcttatatt cattcttggg ccaatcttgg 840 ttcatttttg actgagtcag tgcatgtaat aggaggtact acttatctcc tagagcgtga 900 gctcttaaaa tgtaacatca tgacctataa aatcgttgct acaaatctga agtgtcctaa 960 ggagacgttg cgacattgtg tttggtttga gaatatttcc caatatgtcg ccgttaatat 1020 ccctgaagac tggaatttga ctcattggaa acccgtacgt gtggcgaaga ccaccgtaag 1080 agaagttgaa gagatagctt ttcggtgttt taaggagaat aaagagtgga cagagaatat 1140 gaaagcgatc gcatctattc tgtctgccaa atcttctaca gtcattatca acggtcaagc 1200 tattatggcc ggagagagac taaacatcga tgagtatcat ctcgtcgctt ttgccctcac 1260 tatgaatctt tatcagaagt atgaaaatat tcgaaatttt tatagtgaga tggaatggaa 1320 gggctgggtc aaccacttta aaactagatt ttggtgggga ggaagtacgg ctacctcaag 1380 cactggtaag attcgagagt ttctggctgg taaattccct tggctgaggt tagattcgta 1440 caaagacagt tttgtttttc tgtcgaagat ctctgatgtc aaagagtttg agaacgattc 1500 agttcccatc tcgagactga ggagtttctt cagtagtgaa gacctcatgg agcgcattga 1560 attagagctt gaatctgcgc aaaagcgtcg tcgggagaag aagaagaaag aggctgaaaa 1620 aatcgatgag gaggaatttc aagatgccat cgatatcccg aatgatgccg tcagagatga 1680 cgttaaacct gaaaaggagc ctaaaccgga agtgaccgtt ggagctgaac caacaggccc 1740 cgaagaggca tcgagacact ttgccatcaa ggaattctct gattattgtc gtcgccttga 1800 tgctaacgct gtgtcaaatc ttcgtcgatt atgggccatt gctggctgcg acgggaggac 1860 tgcgaggaat aaatcgatcc ttgaaactta tcatagggtt gatgatatga ttaatttgca 1920 ctatcctggg ggtcaatggt tataccccaa gaaatacgac tatgaagtgg gttacaacga 1980 ttcgggctta ggtccgaaat tcgatgatga gctttatgtc gttgacaaat cttgtatttg 2040 tgcgaattat caggtgctaa gtaaaaatac agatagcttg aaagcacctt cttgcaaaat 2100 ctcgttgtgt gacggagttg ctggatgcgg aaagaccacg gcaattaaat ccgcgttcaa 2160 catagctgag gacctagtgg taaccgctaa taagaagtcc gctgaagatg tcagggaggc 2220 tctatttcct gaaaatccat cgtccgagat agcgttaagt tataaaggac cggcagactc 2280 tgctttaatg catggtttgc cgcaatgtaa gcgcttattg gttgatgaag ctgggctact 2340 gcactatggt caactgctcg ctgtggctgc tctctgtaag tgtcagtctt tccttgcatt 2400 cggagacacg gagcaaattt cttttaaatc gcgagatgca actttccgcc tgaaatatgg 2460 tgatttgcag tttgacagtc gcgatatagt tactgagaca tggagatgtc cgcaagatgt 2520 tatttccgca gttcagactc tgaaaaagaa ggcgggaaac aggacctcca aatatttggg 2580 ttggaaatcc cattctaaag tatccaggag cattagtcat aaagaaatag catcgccttt 2640 gcaggtgacg ctttcaaggg aaaaattcta tttgacaatg actcaggctg ataaagccgc 2700 ccttgtttcc agggctaagg atttcccaga gcttgataag gcctggattg agaaacacat 2760 aaaaaccgtt catgaggctc aaggtgtgtc agtagatcac gctgttttgg tgagacttaa 2820 atccaccaag tgtgatctat ttaaaactga agaatattgt ctggtggctt taactcgaca 2880 taaggttact tttgagtacc tttatgttgg tatgctatcg ggtgatttaa tatttagaag 2940 tatatcttga tcctgagtgt ggttcactta cgaatcagtt ctaacggttt ctataaaccg 3000 tagtcgtcgt tgcgacgccg atcgtcttac aagacgctcg agctgccttt gggttttact 3060 ccttgaaccc ttcggaagaa ttcttcggag ttcgtaccag tacttcacat agtgaagtga 3120 taagactggt gggcagtgcc tagtcgaaag actaggtgat ctctaaggag acca 3174 //