ID HQ611266; SV 1; linear; genomic RNA; STD; VRL; 3174 BP. XX AC HQ611266; XX DT 26-JUN-2011 (Rel. 109, Created) DT 17-AUG-2011 (Rel. 109, Last updated, Version 2) XX DE Cowpea chlorotic mottle virus isolate Car1 segment RNA1, complete sequence. XX KW . XX OS Cowpea chlorotic mottle virus OC Viruses; Riboviria; Bromoviridae; Bromovirus. XX RN [1] RP 1-3174 RX DOI; 10.1007/s11262-011-0613-9. RX PUBMED; 21537997. RA Ali A., Shafiekhani M., Olsen J.; RT "Molecular characterization of the complete genomes of two new field RT isolates of Cowpea chlorotic mottle virus, and their phylogenetic RT analysis"; RL Virus Genes 43(1):120-129(2011). XX RN [2] RP 1-3174 RA Ali A., Shafiekhani M., Olsen J.; RT ; RL Submitted (15-NOV-2010) to the INSDC. RL Biological Science, University of Tulsa, 800 S Tucker Dr, Tulsa, OK 74104, RL USA XX DR MD5; 74335e406b541bda343f6febe1788b8a. DR RFAM; RF01084; TLS-PK3. XX CC GenBank Accession Numbers HQ611266-HQ611268 represent the complete CC genome of Cowpea chlorotic mottle virus isolate Car1. XX FH Key Location/Qualifiers FH FT source 1..3174 FT /organism="Cowpea chlorotic mottle virus" FT /segment="RNA1" FT /host="cowpea" FT /isolate="Car1" FT /mol_type="genomic RNA" FT /country="USA" FT /proviral FT /db_xref="taxon:12303" FT CDS 71..2950 FT /codon_start=1 FT /product="1a protein" FT /db_xref="GOA:F8S8P8" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:F8S8P8" FT /protein_id="AEI54608.1" FT /translation="MASSLDLLKLISERGADSRGASDIVEQQAVKQLLEQVDYSKRSKK FT INIRNKLTPDEENAFRARYGGAFDLNLTQQYNAPHSLAGALRIAEHYDCLSSFPPLDPI FT IDFGGSWWHHYSRKDTRIHSCCPVLGVRDAARHEERLCRMRKLLQECDDREDLPDFCID FT RAESCSVQADWAICIHGGYDMGFTGLCEAMHSHGVRILRGTIMFDGAMLFDNEGVLPLL FT KCRWMKSGKGKSEVIKFDFMNESTLSYIHSWANLGSFLTESVHVIGGTTYLLERELLKC FT NIMTYKIVATNLKCPKETLRHCVWFENISQYVAVNIPEDWNLTHWKPVRVAKTTVREVE FT EIAFRCFKENKEWTENMKAIASILSAKSSTVIINGQAIMAGERLNIDEYHLVAFALTMN FT LYQKYENIRNFYSEMEWKGWVNHFKTRFWWGGSTATSSTGKIREFLAGKFPWLRLDSYK FT DSFVFLSKISDVKEFENDSVPISRLRSFFSSEDLMERIELELESAQKRRREKKKKEVEK FT IDEEEFQDAIDIPNDAVRDDVKPEKEPKPEVTVGAEPTGPEEASRHFAIKEFSDYCRRL FT DANAVSNLRRLWAIAGCDGRTARNKSILETYHRVDDMINLHYPGGQWLYPKKYDYEVGY FT NDSGLSPKFDDELYVVDKSCICANYQVLSKNTDNLKAPSCKISLCDGVAGCGKTTAIKS FT AFNIAEDLVVTANKKSAEDVREALFPENPSSEIALKVIRTADSALMHGLPQCKRLLVDE FT AGLLHYGQLLAVAALCKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFDSRDIVTETWR FT CPQDVISAVQTLKKKAGNRTSKYLGWKSHSKVSRSISHKEIASPLQVTLSREKFYLTMT FT QADKAALVSRAKDFPELDKAWIEKHIKTVHEAQGVSVDHAVLVRLKSTKCDLFKTEEYC FT LVALTRHKITFEYLYVGMLSGDLIFRSIS" XX SQ Sequence 3174 BP; 890 A; 598 C; 777 G; 909 T; 0 other; gtaatccacg agaacgaggt tcaatccctt gtcgactcac ggagtatcga acttttctaa 60 attttattta atggcaagtt ctttagatct tttgaaattg atttctgaga gaggtgctga 120 cagccgaggc gcttcggaca tagtggaaca acaagctgta aagcagttgc ttgagcaagt 180 tgactactcg aaaaggtcca agaaaatcaa tattagaaat aaactcacgc ccgatgaaga 240 gaatgctttc cgggcgcgct atggaggagc ttttgatttg aatttgactc aacaatataa 300 cgctccccat agtttggctg gggctctgcg catagcggag cattatgatt gtctttcaag 360 ctttcccccg cttgatccca tcattgattt tggtggttct tggtggcatc attattccag 420 gaaggacacg cgtatccaca gttgttgtcc tgtgttgggc gtcagagatg ctgcacgaca 480 cgaggaacgc ttatgtagga tgcgtaagct tttacaagag tgcgacgaca gagaagatct 540 accagatttc tgtattgata gagcagaatc ttgcagtgtc caggctgatt gggccatatg 600 cattcacggt ggttatgata tgggtttcac aggtttatgt gaggccatgc attcccatgg 660 tgtgcgtatc ttgcgaggta ctataatgtt cgacggtgct atgctgtttg ataatgaggg 720 tgttttaccc ttgttaaagt gccgttggat gaaatctgga aaaggtaaat ctgaggtcat 780 taaatttgat tttatgaatg agagcacact ttcttatatt cattcatggg ccaatcttgg 840 ttcatttttg actgagtcag tgcacgtaat aggaggtaca acttatctcc tagagcgtga 900 gctcttaaaa tgtaatatca tgacctataa aatcgttgcg actaacctga agtgtcctaa 960 ggagacattg cggcattgtg tttggtttga gaatatttcc caatatgtcg ctgttaatat 1020 ccctgaagac tggaatttga ctcattggaa acccgtacgt gtggctaaaa ccaccgtaag 1080 agaggtagaa gagatagctt ttcgatgttt taaggagaat aaagagtgga ctgagaatat 1140 gaaagcgata gcatctattt tgtccgccaa atcttctacg gtcattatca acggtcaagc 1200 tatcatggcc ggagagagac tgaacattga tgagtatcat ctcgtcgcct ttgctctcac 1260 tatgaattta tatcagaaat atgaaaacat ccgaaatttt tatagtgaga tggaatggaa 1320 gggctgggtc aaccacttca aaactagatt ttggtggggt ggaagtacgg ctacctcaag 1380 caccggtaag attcgagagt ttctggctgg taagttccct tggctgaggt tagattcgta 1440 caaagacagt tttgtgtttc tgtcgaagat ctccgacgtt aaagagtttg agaacgattc 1500 tgttcccatc tcgagactga ggagtttctt cagcagtgaa gacctcatgg agcgcattga 1560 gttagagctt gaatctgcgc aaaagcgtcg tcgggagaag aaaaagaaag aggtcgaaaa 1620 aatcgatgag gaggaatttc aagatgccat cgatatcccg aatgatgccg tcagagatga 1680 cgttaaacct gaaaaggagc ctaaaccgga agtgaccgtt ggagctgaac caacaggccc 1740 cgaagaggca tcgagacact ttgccatcaa ggaattctct gattactgtc gtcgccttga 1800 tgctaacgct gtgtcaaatc ttcgtcgcct atgggccatt gctggctgcg acgggaggac 1860 tgcgaggaat aaatcgatcc ttgagactta tcatagggtt gatgatatga ttaatttgca 1920 ctatcctggg ggtcaatggt tataccccaa gaaatacgat tatgaagtgg gttacaatga 1980 ttcgggccta agcccgaagt ttgatgacga actttatgtc gttgataaat cttgtatatg 2040 tgcgaattat caggtgctga gtaaaaatac agataactta aaagcacctt cttgcaaaat 2100 ctcgttgtgc gacggagttg ctggatgtgg aaagaccaca gcaattaaat ccgcattcaa 2160 catagcagag gacctagtgg taactgctaa taagaagtcc gctgaagatg ttagggaggc 2220 tctattccct gaaaacccat cgtctgaaat agcgttgaaa gttataagga cggcagactc 2280 tgctttaatg catggtttgc cacaatgtaa acgcttattg gtcgatgaag ctgggctact 2340 gcactatggt caactgttgg ctgtggctgc tctctgtaag tgtcagtctg ttcttgcatt 2400 cggagacacg gagcaaattt cttttaagtc gcgagatgca actttccgcc tgaaatatgg 2460 tgatttgcag tttgacagtc gcgatattgt cactgagaca tggagatgtc cgcaagatgt 2520 tatttccgca gttcagactc tgaaaaagaa ggcgggaaac aggacctcca aatatttggg 2580 ttggaaatcc cattctaaag tatccaggag catcagtcat aaagaaatag catcaccttt 2640 acaggtgacg ctttcaaggg aaaaattcta tctgacgatg actcaggctg ataaagccgc 2700 cctcgtttcc agggctaagg atttcccaga gcttgataag gcctggattg agaaacatat 2760 aaagaccgtt catgaggctc aaggtgtatc agtagatcat gctgttttgg taagacttaa 2820 atctaccaag tgtgatttat ttaaaactga agaatattgt ttggtagctt taacccgaca 2880 taagattacc tttgagtatc tttatgttgg catgctatca ggtgatttaa tatttagaag 2940 tatatcttga tcctgagtgt gattcactta cgaatcagtt ctaacagttt ctataaactg 3000 tagtcgtcgt tgcgacgccg agtgtcttac aagacattcg agctgccttt gggttttact 3060 ccttgaaccc ttcggaagaa ttcttcggag ttcgtaccag taccttacat agtgaggtaa 3120 taagactggt gggcagtgcc tagtcgaaag actaggtgat ctctaaggag acca 3174 //