ID HQ607526; SV 1; linear; genomic RNA; STD; VRL; 4942 BP. XX AC HQ607526; XX DT 08-MAY-2011 (Rel. 108, Created) DT 08-MAY-2011 (Rel. 108, Last updated, Version 1) XX DE Trichomonas vaginalis virus 4 strain TVV4-OC5, complete genome. XX KW . XX OS Trichomonas vaginalis virus 4 OC Viruses; Riboviria; Totiviridae; Trichomonasvirus. XX RN [1] RP 1-4942 RX DOI; 10.1128/JVI.00220-11. RX PUBMED; 21345965. RA Goodman R.P., Freret T.S., Kula T., Geller A.M., Talkington M.W., RA Tang-Fernandez V., Suciu O., Demidenko A.A., Ghabrial S.A., Beach D.H., RA Singh B.N., Fichorova R.N., Nibert M.L.; RT "Clinical isolates of Trichomonas vaginalis concurrently infected by RT strains of up to four Trichomonasvirus species (Family Totiviridae)"; RL J. Virol. 85(9):4258-4270(2011). XX RN [2] RP 1-4942 RA Goodman R.P., Freret T.S., Kula T., Geller A.M., Demidenko A.A., RA Talkington M.W.T., Ghabrial S.A., Singh B.N., Fichorova R.N., Nibert M.L.; RT ; RL Submitted (12-NOV-2010) to the INSDC. RL Department of Microbiology and Molecular Genetics, Harvard Medical School, RL Armenise Building, Room 523, 200 Longwood Avenue, Boston, MA 02115, USA XX DR MD5; a5426a5cfbb6d0bfa18760d8037cb701. DR EuropePMC; PMC3126235; 21345965. XX FH Key Location/Qualifiers FH FT source 1..4942 FT /organism="Trichomonas vaginalis virus 4" FT /host="Trichomonas vaginalis" FT /strain="TVV4-OC5" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="Jan-2010" FT /db_xref="taxon:1008292" FT gene 338..4782 FT /gene="pol" FT CDS join(338..2534,2534..4782) FT /codon_start=1 FT /gene="pol" FT /product="RNA-dependent RNA polymerase" FT /note="translated via ribosomal frameshift" FT /db_xref="GOA:F5B2V8" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:F5B2V8" FT /protein_id="AED99798.1" FT /translation="MSAIATTIASANLNDLSRSANAPQNEGVPALAPQQNNAKPNTGPP FT DPGEGTKQQTTNSSLSANDFTKEHTPATTIQKDTTIPNTDLPSSEEGPRTHSTDFQTLY FT EYFYSYPVPASQTRTGGAITRNGPVNDNNEVVSFTTETALVTSLTPRHIDTNIQPLQIS FT IADDCVNYSCQYSGQTCPIFDGSQHVQSATALASSMKARLMCEVTQSLSARPVQQPQII FT AYLYGALLALGDRLNIHYGNKVNLWNALLGHNLQRGAPINGENFNHHLLIDGPLAPPIL FT PAAGLGPFPSTTLGPNTTVTFKARASIFVRPQTYDYALVDAAFWLIYAMYSRMPVAFRQ FT SYSLNIDFFTVQPMAACVFPGHDGFTTPVIDQALGVLESMLVEMFNGDREIMYYYAFKG FT GQVFMRPCSCYQEGGLIRKASRNVSLASFTGIYSLIGYCAPEARPLHAANHPGIIAALF FT QYVDTMVLQAVLSYSGPKLIHFGAAPEFATKGSTPYNFIDPDNYWGIRAGVNAHPVGYY FT YLDILMRQKEHQLLDETLSDIYGHVGSLAMSNIMASIASSGTEVLNQKMQKSFVRRGNQ FT VRALRHSHAIINRFHEPEYAYRLGILADGIMPLSGTHKCNIIDEATRLLEGEDIRNLPG FT LRCLRGRGLDAIVGIRPINKKRRAGFYTLDGNFHVVTNQSTSDILQVWNDHGYIARPYA FT CHIVESINVEIYDKSNGAYEGWIQALVGGFGVPERCYMGPSSAGSRRRPLCPLKGSNCA FT AALHVDGQLYRASRLPYRKLTTSHLNCSKHCARQLAVIYRYQTLSPQLTEVSDADYLAF FT LRWVLLPYTGATNRPHPKRWPKPFYPREVNLKFLDKETELQLFPLKKVPQADLKVNCFA FT RNLLYSSPLSDRILKQCIPVGTNNDTVCGLIILLELLFEAGVPLDLLPIISVAIAKNDP FT FVKALSDFNKMTGATTSHIANLLTECATLLGRGVAGSEPNVDLYHRVAPEGNPHEAKIS FT DDVLRSAIRTIYKQEIKDCPKPGDFRLHLLTSPFWCKSGSHHHPEFPSYRNRLEFVMNT FT DPDNIIAVKPSVYITQAQKLEHGKTRYIYNCDTVSYLYFDYILNYIESIWANSHVLLNP FT DALNAEKFATLEYPKYCMIDYTDFNSQHTLTSMKVVFEVLKEFLPSEMFPVLDWCITSF FT DNMTIRDKKWRSTLPSGHRATTFINSVLNRAYLLPYIGTIVSYHCGDDVLLCGDYDYQN FT LITRLPYELNPSKQSFGPHAEFLRLHRHGEKVIGYPTRAISSLVSGNWLSTTSWNWQPS FT LLSVTNQINAIICRSQLSINRIRSLAQELRFRYCPLFDGYIDPATTSFVAAGCPSYQPT FT ATMIIPDVPHLDAGEVEFAQLHQLAKYAINTYPWLNSVESVDQLVRNRMRRPAAQDIRY FT SILGPAIPLVSYHHHCDPMVVPPARRYYPRDHLAPPITPQVLPPQPVFCDRDLSPIIAL FT KIAPAGVAVKVTADRPIASA" FT CDS 338..2578 FT /codon_start=1 FT /gene="pol" FT /product="capsid protein" FT /db_xref="UniProtKB/TrEMBL:F5B2V9" FT /protein_id="AED99797.1" FT /translation="MSAIATTIASANLNDLSRSANAPQNEGVPALAPQQNNAKPNTGPP FT DPGEGTKQQTTNSSLSANDFTKEHTPATTIQKDTTIPNTDLPSSEEGPRTHSTDFQTLY FT EYFYSYPVPASQTRTGGAITRNGPVNDNNEVVSFTTETALVTSLTPRHIDTNIQPLQIS FT IADDCVNYSCQYSGQTCPIFDGSQHVQSATALASSMKARLMCEVTQSLSARPVQQPQII FT AYLYGALLALGDRLNIHYGNKVNLWNALLGHNLQRGAPINGENFNHHLLIDGPLAPPIL FT PAAGLGPFPSTTLGPNTTVTFKARASIFVRPQTYDYALVDAAFWLIYAMYSRMPVAFRQ FT SYSLNIDFFTVQPMAACVFPGHDGFTTPVIDQALGVLESMLVEMFNGDREIMYYYAFKG FT GQVFMRPCSCYQEGGLIRKASRNVSLASFTGIYSLIGYCAPEARPLHAANHPGIIAALF FT QYVDTMVLQAVLSYSGPKLIHFGAAPEFATKGSTPYNFIDPDNYWGIRAGVNAHPVGYY FT YLDILMRQKEHQLLDETLSDIYGHVGSLAMSNIMASIASSGTEVLNQKMQKSFVRRGNQ FT VRALRHSHAIINRFHEPEYAYRLGILADGIMPLSGTHKCNIIDEATRLLEGEDIRNLPG FT LRCLRGRGLDAIVGIRPINKKRRAGFYTLDGNFHVVTNQSTSDILQVWNDHGYIARPYA FT CHIVESINVEIYDKSNGAYEGWIQALVGGFGVPERCYMGPRLQVAGGAPSAL" XX SQ Sequence 4942 BP; 1306 A; 1418 C; 991 G; 1227 T; 0 other; gcttaaagcc ccagtgagct ttaagcacca gaagtcgcag cattacacta tcatgcctta 60 catgagctgc gaagtggtta gaattaaaca cgcgttttgg aagtcgtcag acgcgtggtg 120 gtcacttcgg tgatcaagtt atactgacat ggcgccgggt ggttgacgac cctggccgcc 180 tagttgtagc ctttggctct ttgccccaag cgtggtttga acctgccttc agtggattct 240 attgagtgta atacctcaat agaggtgtca aaccggccta gatgtaatag tctaggttta 300 tggacagtga tgtccacttg tgcttccgtg ctacgtcatg tcagctatag caaccactat 360 tgcttctgct aatcttaatg atttatcacg ttctgcaaac gccccgcaaa atgaaggcgt 420 ccctgctctt gcgcctcagc aaaataatgc taagccaaac actggtcctc ctgaccccgg 480 tgagggaacg aaacaacaaa ctacaaattc ttcactctca gcaaacgatt tcacaaaaga 540 acatactcct gctaccacga ttcagaaaga taccactatt ccgaacacag acctccccag 600 ttccgaagaa ggaccaagaa cacattctac agattttcaa actctttatg aatattttta 660 cagttatcca gttccagctt cacagaccag gaccggcggt gctatcacac gtaacggccc 720 agttaatgac aacaacgaag ttgtctcttt cacaaccgaa acagcattag ttacttcact 780 cacaccaaga catatcgaca caaacatcca gcctctccaa atctcaatcg ctgatgattg 840 cgtcaactat tcgtgccaat acagcggcca aacctgcccg atattcgatg gttcacaaca 900 cgtccagagc gccacagctc tcgccagttc catgaaagct cgcctcatgt gtgaagtcac 960 acaatctttg tccgcacgtc ctgtccaaca accccaaatc atcgcttacc tctatggtgc 1020 tttacttgca cttggagatc gcctcaacat ccactacggc aataaagtca acctctggaa 1080 cgctttactc ggtcacaatt tacaaagagg agccccgatc aacggtgaaa atttcaacca 1140 tcacttgctc atcgatggtc ctctcgctcc tccaatactc ccagccgctg gattaggtcc 1200 attcccatcg acgacattgg gaccaaacac cacggttaca ttcaaggctc gcgcttccat 1260 cttcgttcgt ccacaaacct acgattacgc tcttgtcgat gccgctttct ggcttattta 1320 cgctatgtat tcccgtatgc cagttgcttt ccgtcaatcg tactccctca atattgattt 1380 cttcaccgtc caaccaatgg ccgcttgcgt attcccagga cacgatggtt tcaccacacc 1440 agttatcgac caagctctcg gcgttctcga atcaatgtta gtcgagatgt tcaatggtga 1500 tcgagaaatc atgtactact acgcgttcaa aggtggtcag gttttcatgc gcccttgctc 1560 ctgctaccaa gaaggaggcc tcatccgtaa agcctcacgc aatgtctcac tcgcatcatt 1620 cacaggtatc tactcactca tcggttattg cgcaccagaa gccagaccac tccatgcagc 1680 caatcatcca ggcatcatcg ctgccctctt ccaatacgtc gatacaatgg tcttacaagc 1740 cgtcctttcg tactccggcc ccaagctcat ccacttcgga gccgcaccag aattcgccac 1800 gaaaggctct acaccataca atttcatcga ccctgataac tattggggaa tcagggccgg 1860 tgtcaatgca cacccagtcg gttattacta cctcgacatc ctcatgcgcc aaaaagaaca 1920 ccaactcctc gatgagacac tctccgatat ctacggacac gtcggctcgc ttgccatgtc 1980 aaacataatg gcaagcattg catcttccgg cactgaagtt ctcaatcaga agatgcagaa 2040 atccttcgtc agacgtggca accaagtacg tgcattacgc cactcccacg ccattatcaa 2100 tcgcttccac gaaccagaat acgcctaccg cctcggaatt ctcgcagatg gtatcatgcc 2160 tttatcaggt acccacaaat gcaacatcat cgatgaggct actcgcttac tcgagggaga 2220 agatatccgc aatctcccag gtcttcgttg tttacgcggt cgcggcctcg acgccatcgt 2280 tggaatccgt ccaatcaaca agaagcggcg cgcgggcttc tacaccctcg atggcaattt 2340 ccacgtcgtc acaaaccaga gcacaagcga catcctccag gtttggaacg atcacggcta 2400 catcgcacgc ccttacgctt gccacatcgt cgaatccatc aatgtcgaga tctacgataa 2460 atcaaatggc gcctacgaag gatggatcca agcgctcgtc ggcggcttcg gtgtccccga 2520 acgctgctac atgggccctc gtctgcaggt agcaggaggc gccccctctg ccctttaaag 2580 ggcagcaatt gcgcagcagc actgcatgta gatggacaac tatatagagc aagtcggcta 2640 ccataccgta agctcacaac aagtcatctt aattgctcga agcactgcgc acgtcaactg 2700 gcggttatat atagatacca gacactgagc ccccagttga ccgaggttag tgatgcagat 2760 tacctcgctt tcctccgttg ggtcctgtta ccttacacag gtgctacaaa tagaccacac 2820 cccaagcggt ggcctaaacc attttaccca agggaggtga atctcaagtt tttagataaa 2880 gagaccgagt tacagttgtt ccctctcaag aaggtcccac aagccgactt gaaagtcaac 2940 tgctttgcaa gaaacctact ttattcgtcg cctctttccg accgaattct caagcaatgt 3000 atcccagttg gaacgaataa cgatacggtt tgtggtctca ttatcttact tgagctcctc 3060 ttcgaagcgg gggtcccact agacctctta cctattatca gtgtcgctat cgcaaagaat 3120 gatccattcg ttaaagccct ttcggacttt aacaagatga cgggcgcaac cacctcacac 3180 attgcaaacc tcttgactga gtgcgcgacc ttgcttggcc gcggcgtcgc aggatctgag 3240 ccgaatgttg atttgtatca ccgggtagct cctgagggca atccacatga agcgaagatc 3300 agtgacgatg tgttgcgttc cgccattcga accatttaca aacaagaaat caaagattgt 3360 ccaaagccgg gtgacttccg cttacacctc ctcacaagtc cattttggtg caagtctggg 3420 tcacaccatc atccagaatt cccttcatat cgtaaccgac tcgaattcgt aatgaacacc 3480 gatcctgata acattattgc tgttaagcca tccgtatata ttacccaagc acaaaaactc 3540 gaacatggaa agactcgata catatacaat tgcgacacag tttcttactt atacttcgac 3600 tacatactga actacataga gagcatatgg gccaattctc atgtgctgct caatcccgac 3660 gctcttaatg cggagaagtt cgccacactt gagtatccga agtattgtat gatcgattac 3720 actgacttca attcacagca tactctcaca tcaatgaaag tagtcttcga agtgctcaaa 3780 gagttcttac cctcagagat gttcccagtc ctcgattggt gtataaccag cttcgacaac 3840 atgacaatca gagataagaa atggagaagt acattgcctt ctggccacag agcgaccacc 3900 tttatcaatt cggtactaaa tagagcctac ttgttacctt acatcggtac tatcgtcagc 3960 tatcactgtg gtgatgacgt actcttatgt ggggactatg attaccagaa cctaataacg 4020 cgcctgcctt atgagttgaa cccaagcaag caaagtttcg gaccgcatgc cgaattctta 4080 cgcttgcaca ggcatggtga aaaagttata ggatatccca ctcgcgcaat ttcatcacta 4140 gtttccggca actggcttag tacgacaagt tggaattggc aaccatcctt gctatctgta 4200 acgaatcaga taaacgccat catctgccgc tcgcaactct ccataaatag aatacgttcg 4260 cttgcccaag aactacgctt ccgctactgt ccactgtttg acggctacat tgacccggcc 4320 acaaccagct ttgtagctgc gggctgtccc tcatatcaac caactgcgac aatgatcatc 4380 cctgacgtgc cccacctgga cgccggagag gtcgaattcg ctcaactcca tcagttggct 4440 aaatatgcta tcaatactta cccgtggctt aactccgtcg agtctgttga ccagctcgtt 4500 agaaacagaa tgcgtagacc tgctgcacaa gacatccgtt atagcatact tggcccggct 4560 atcccacttg tttcttacca ccatcactgt gatccaatgg tcgtcccacc tgcgaggagg 4620 tattatccac gagaccactt agcgcctccg attacaccac aagttttacc tcctcaacca 4680 gttttttgcg atagagattt gtctccaata atagcactca aaatagcacc cgccggtgtg 4740 gcagtaaaag ttactgcaga ccggccgata gccagtgctt aaataggtgg cccactgcag 4800 tgggctaatg actgcagact tagttggcat taaacaccac cttttgccaa ctcgcctacg 4860 taagtaggaa cagccgtatg gctaacaacc catacgtctc agcacgcgct ttgtgctaga 4920 cctatgactc ccggtcttcc tc 4942 //