ID HQ607516; SV 1; linear; genomic RNA; STD; VRL; 4678 BP. XX AC HQ607516; XX DT 08-MAY-2011 (Rel. 108, Created) DT 08-MAY-2011 (Rel. 108, Last updated, Version 1) XX DE Trichomonas vaginalis virus 1 strain TVV1-UH9, complete genome. XX KW . XX OS Trichomonas vaginalis virus 1 OC Viruses; Riboviria; Totiviridae; Trichomonasvirus. XX RN [1] RP 1-4678 RX DOI; 10.1128/JVI.00220-11. RX PUBMED; 21345965. RA Goodman R.P., Freret T.S., Kula T., Geller A.M., Talkington M.W., RA Tang-Fernandez V., Suciu O., Demidenko A.A., Ghabrial S.A., Beach D.H., RA Singh B.N., Fichorova R.N., Nibert M.L.; RT "Clinical isolates of Trichomonas vaginalis concurrently infected by RT strains of up to four Trichomonasvirus species (Family Totiviridae)"; RL J. Virol. 85(9):4258-4270(2011). XX RN [2] RP 1-4678 RA Goodman R.P., Freret T.S., Kula T., Geller A.M., Demidenko A.A., RA Talkington M.W.T., Ghabrial S.A., Singh B.N., Fichorova R.N., Nibert M.L.; RT ; RL Submitted (12-NOV-2010) to the INSDC. RL Department of Microbiology and Molecular Genetics, Harvard Medical School, RL Armenise Building, Room 523, 200 Longwood Avenue, Boston, MA 02115, USA XX DR MD5; 2964766fd6686a11e20d829ed431c83f. DR EuropePMC; PMC3126235; 21345965. XX FH Key Location/Qualifiers FH FT source 1..4678 FT /organism="Trichomonas vaginalis virus 1" FT /host="Trichomonas vaginalis" FT /strain="TVV1-UH9" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="Sep-2002" FT /db_xref="taxon:674953" FT gene 325..4615 FT /gene="pol" FT CDS join(325..2351,2353..4615) FT /codon_start=1 FT /gene="pol" FT /product="RNA-dependent RNA polymerase" FT /note="translated via ribosomal frameshift" FT /db_xref="GOA:F5B2T8" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:F5B2T8" FT /protein_id="AED99814.1" FT /translation="MEASANGLSHDENATRSQNVGPSTLPGSDKQGGEKHENSFNSFSN FT DFFFNFLRISAQTHISDSPGVSFIGKDGTPYSSTTIPSAVGRLTHNVVASAVQLNVTAD FT NVLEVDYGFGQDVSRSTGTITIPIFDGEKYKETARALATIFSKKGMAVDVTSQTVQETL FT KNSDLTIATVAAGYYTALAARHELTKQVSVASHTIPFVTALSDTLSAAQGAQRSSHVIS FT SCLRCPHSNNVQHDVGIGTDMWNNVSVESLSPQNMAVPNPNDVSFFIPNKALPPPWWCA FT IWLLNAFIHSFVAPTRFHIFIAPGETYHLAPFTDADVYEAIPIMLAMSKAARPVPESVE FT SMLYAYGTQMIIQPHSLYTEGGLIRRMIFTVPHLPAHGYFVTNSEYSRYMNIAVPNDPR FT SAKDFIIGAGTGLLQITLAYQAAFSCAGPIALHWHDNDAISQGMDTIASTYLEGRYFTI FT PIAVAVATNVAQYTTMVRADPQYRHTLDRILPRIFGPSTDTVFNFIESAISSSWVSIDA FT RRRNGRARKFRTAFINRFHDPEFAYMFGITGNGIERMEGKVTSTISQEVDYLLHGGDLR FT NCPVLRTLKAAERDETITFMCKEKAGTLFAMDGTMRWFKRFETIDLTQLGWTSHGKVMK FT PYAFRAPIIQGITICNTAYTTTAIDIVTTVFGPLRQRVGSLLSKAVRCGPIIPTIKHHF FT NFKHVITAKRNDNEYVFIPGYGWVLQDDYLLNAVKMTGEGDLPPDQLPYDDDLLLTYAK FT ILLYDYITHFPKYRYNNPKILTQETEIQLFPLKEDSAARNKVNFYTRLLWNEATSDKKA FT FKPGTYNDTVAGLLMWQQCALMWSIPQSIINRTISGVCDALTDRTSLTLLKRISDWLKQ FT LGLAYSPIHRLFIELPTLLGRGAIPGDAAHDIKHRLTFDPSITVDVPTDQLHRLIYRLL FT SRNLNITTVDSFEDHLEERLLWSKSGSHYYPDDEVNKLLPHRPTRKEFLDIVTVDYIKR FT CKPQVFIRQSRKLEHGKERFIYNCDTISYVYFDYILKLFETGWQDSEAILSPGDYTNDR FT LHTKISSYKYKAMLDYTDFNSQHTIESMRLIFETMKELLPSEATFALDWCIASFDNMKT FT SKGHKWVATLPSGHRATTFINTVLNWCYTQMVGLKFDSFMCAGDDVILMSQEPISLAPI FT LTSHFKFNPSKQSTGTRGEFLRKHYTAEGVFAYPCRAIASLVSGNWLSETLRDNTPMVV FT PIQNGIDRLRSRAGLLGVPWRLGLSELIEREDIPKEVGMALLNSHAAGPGLITRDYSSF FT TVTPKPPTITSTLEYTATRYGVQDLSKHVPWKQLTLQECNKLGQQIKKMSHRHCSQAKI FT TYKCVYEVFKPNGLPTVLSEVSQPSLSMVWWQAMLKEAMQDYSVKKIDAQMFASNACTS FT SVSGDAFLQATPKMAGVLMTSLIYSSS" FT gene 325..2361 FT /gene="cap" FT CDS 325..2361 FT /codon_start=1 FT /gene="cap" FT /product="capsid protein" FT /db_xref="UniProtKB/TrEMBL:F5B2T9" FT /protein_id="AED99813.1" FT /translation="MEASANGLSHDENATRSQNVGPSTLPGSDKQGGEKHENSFNSFSN FT DFFFNFLRISAQTHISDSPGVSFIGKDGTPYSSTTIPSAVGRLTHNVVASAVQLNVTAD FT NVLEVDYGFGQDVSRSTGTITIPIFDGEKYKETARALATIFSKKGMAVDVTSQTVQETL FT KNSDLTIATVAAGYYTALAARHELTKQVSVASHTIPFVTALSDTLSAAQGAQRSSHVIS FT SCLRCPHSNNVQHDVGIGTDMWNNVSVESLSPQNMAVPNPNDVSFFIPNKALPPPWWCA FT IWLLNAFIHSFVAPTRFHIFIAPGETYHLAPFTDADVYEAIPIMLAMSKAARPVPESVE FT SMLYAYGTQMIIQPHSLYTEGGLIRRMIFTVPHLPAHGYFVTNSEYSRYMNIAVPNDPR FT SAKDFIIGAGTGLLQITLAYQAAFSCAGPIALHWHDNDAISQGMDTIASTYLEGRYFTI FT PIAVAVATNVAQYTTMVRADPQYRHTLDRILPRIFGPSTDTVFNFIESAISSSWVSIDA FT RRRNGRARKFRTAFINRFHDPEFAYMFGITGNGIERMEGKVTSTISQEVDYLLHGGDLR FT NCPVLRTLKAAERDETITFMCKEKAGTLFAMDGTMRWFKRFETIDLTQLGWTSHGKVMK FT PYAFRAPIIQGITICNTAYTTTAIDIVTTVFGPLRQRVGSLFE" XX SQ Sequence 4678 BP; 1387 A; 1159 C; 936 G; 1195 T; 1 other; gcaaaaagag ggagtgatcc actttcctct ttttgcaccc aacattgtta catcatcatg 60 acgaacccat aacgcggaca cataacaagc gtagtgtcct cgacgattgc catcctcgtg 120 tgaattccgg gctccgcttg cactgatggt acctcttacg aaacttggag agacttcggc 180 cttgaagagc ggtaatgtgc cctctgcgcc tgggacctaa tggtgttttt gctgtaggta 240 cttcaatagt aggaaggagt agggttaaac atcctggttc gctaggtttg tcctcgcctt 300 aatctctatt gataatgaat acccatggag gcttctgcta atgggttatc acatgatgaa 360 aatgcgacaa gatcgcaaaa tgttggacct tctactcttc cggggtcaga taaacaagga 420 ggagaaaaac acgaaaattc ttttaattct ttttcaaatg atttcttttt taatttttta 480 cgtatatctg cacagacaca catttcagac agtccaggcg tctctttcat aggtaaagac 540 ggcacgccct actcatcaac tacaattcca tcagctgtag gccgtcttac acacaatgta 600 gttgcatcag ccgtccagct caacgtcaca gccgataatg tcttagaagt cgactacggt 660 ttcggtcagg acgtctcaag atctacagga acgatcacaa tcccaatctt cgacggtgaa 720 aagtacaaag aaacagctcg cgccttagcc acaatcttca gcaagaaagg tatggcagtc 780 gacgtcacat cacagacggt ccaggaaact ctcaagaatt cagaccttac aattgccacg 840 gtagcagctg gatattacac agccctagca gctcgtcacg aactcaccaa acaagtaagc 900 gtcgcatccc ataccatacc gttcgtcacc gcgttatcag atacactctc ggccgcacaa 960 ggtgcgcaac gttcaagcca tgttatctct tcttgcttac gttgccctca ttccaacaat 1020 gttcaacatg acgtcggaat cggtacagac atgtggaata acgtctccgt cgaaagtctt 1080 tcaccacaga acatggcagt tcctaatcct aacgatgtat ccttcttcat tccgaacaag 1140 gctctcccac ctccttggtg gtgcgctatt tggcttctca atgccttcat tcacagcttt 1200 gtcgcgccga cacgtttcca tatcttcatt gctccaggcg aaacatacca tcttgcacca 1260 tttacagatg ccgatgttta cgaagcgatc cctatcatgc ttgcgatgtc aaaggcggca 1320 cgcccagttc ctgagagcgt tgagagtatg ctttatgcat acggtacaca gatgattatc 1380 cagccacact cgctctacac agaaggtgga ttaatcagaa ggatgatatt tacggttcca 1440 catctcccag cacacggcta cttcgtcacg aattccgaat actcaagata catgaacatc 1500 gctgttccaa acgaccctcg ttctgcaaaa gactttatta tcggtgctgg aacgggtctc 1560 ttacaaatca cactcgccta ccaagctgct ttcagttgcg caggccccat cgcacttcat 1620 tggcacgaca acgatgccat ctcccaaggt atggatacaa ttgctagcac ctaccttgaa 1680 ggaagatact tcactattcc tatagcggtt gctgtcgcta caaatgtagc tcaatataca 1740 acgatggtca gagctgatcc ccaatacagg cacacactcg atcggatctt accacgcata 1800 ttcggtccat caacagatac agtgttcaat ttcatcgaat ccgctatctc atcatcatgg 1860 gtatcaatcg atgcccgcag gcgaaacggt cgcgcaagaa aattcaggac ngccttcatc 1920 aatcgttttc atgatccaga attcgcatac atgttcggta tcactggtaa cggtatcgag 1980 agaatggaag gcaaagtcac ttccaccatc agccaagagg tcgactacct cttacacggc 2040 ggtgaccttc gcaactgccc agtccttcgc accctcaaag cagcagagag agatgaaaca 2100 atcacgttca tgtgcaagga gaaagctggc acgctcttcg ccatggacgg aacaatgcgc 2160 tggtttaagc ggttcgagac aatcgatctc acccagctcg gatggacatc acacggaaag 2220 gtcatgaagc cgtacgcatt cagagctcca atcatccaag gaataacaat ctgcaacaca 2280 gcttacacaa caacagccat cgacatcgtt acaactgtct ttggtccttt acgtcagagg 2340 gtaggttccc tttttgagta aagctgtacg ttgtggccct ataataccaa ccatcaagca 2400 tcatttcaat ttcaaacatg ttataacagc taagcgaaat gataacgaat atgttttcat 2460 tcccggatat ggttgggtat tacaggatga ttatttgttg aatgccgtaa agatgactgg 2520 tgaaggtgat ttaccccctg atcagttacc ttacgatgat gatcttttac ttacatacgc 2580 aaaaatttta ctttatgatt acataactca ttttcctaaa tacagatata acaatcctaa 2640 gatattaaca caagaaacag aaatacaact tttcccactc aaagaagact cagctgctag 2700 aaacaaagtc aacttctaca ctagactact atggaacgaa gcaacctcag ataaaaaggc 2760 tttcaaacca ggaacttaca atgacacagt agcaggctta ttgatgtggc aacaatgtgc 2820 tcttatgtgg tccatacctc agtcaattat caacagaaca attagcggtg tttgtgatgc 2880 attaaccgat aggacttcac tcacgctatt gaaacgtatc tcagactggc tgaaacagct 2940 tggactagct tactcaccta tacatcgcct tttcatagag ctccccacat tattaggacg 3000 tggagccata ccaggcgacg cagctcacga tattaagcac agactcacgt tcgacccatc 3060 aattacagta gacgtgccaa cagaccaatt acataggtta atttacagac tcttatctcg 3120 gaacctcaat ataactacgg tagatagttt cgaagatcac ttagaggaac ggctactttg 3180 gtccaaatca ggaagtcact attatcccga cgacgaagtg aataagttac ttcctcaccg 3240 ccctacaaga aaggaattct tagacatagt aacagtagat tacattaaac gatgcaagcc 3300 ccaagttttc atcagacaat cacgcaagct agaacacggc aaggagcgat tcatctacaa 3360 ttgtgacacg atctcgtatg tctattttga ttacatcctg aagctcttcg agacaggatg 3420 gcaagatagt gaagcaatat tgtcaccagg tgattatact aatgatcgtc tccacaccaa 3480 gatctccagc tataagtaca aagcaatgtt agattataca gattttaatt ctcaacacac 3540 gatcgaaagc atgcgtctga ttttcgaaac catgaaagaa ctactcccgt cagaagcgac 3600 cttcgcactt gactggtgta tagcatcctt cgacaacatg aaaacatcca aaggtcacaa 3660 atgggttgcg acccttccta gcggacatcg tgctacaacg ttcatcaata cagtattaaa 3720 ttggtgttac acgcagatgg tcggtctcaa gtttgacagt tttatgtgcg ctggtgatga 3780 tgtcatctta atgtcccaag aaccaatatc attagctcca attctcacat cgcacttcaa 3840 attcaatcct agcaaacaga gtacaggcac tagaggtgag ttcttacgca agcattacac 3900 tgcagaaggc gtgtttgcat acccatgtag agcgatcgca agtttagtaa gcggaaattg 3960 gttgagcgaa acactaagag ataacacccc aatggtggtc ccaatacaga atggaatcga 4020 tagattacgc agtagagcgg gtttactcgg agtcccttgg cgtttaggcc tctcagagct 4080 cattgagaga gaggacatac ccaaggaagt cggcatggct ttactcaatt cgcacgcagc 4140 gggaccgggt ctcatcacac gtgattacag ttcatttaca gttacaccca aaccgcctac 4200 aataactagt acacttgaat acaccgcgac tcgttatggt gtccaagacc tgtccaaaca 4260 cgtaccttgg aaacaactca cattacaaga atgcaataaa ttaggtcaac agattaagaa 4320 aatgagccac aggcattgta gccaggccaa gataacttac aaatgcgtct acgaggtttt 4380 taaacctaat ggactcccta cggtgttatc tgaggtcagc caaccatcgt tgtcgatggt 4440 gtggtggcag gcaatgctta aggaagcaat gcaggactat tctgttaaga agatagatgc 4500 tcaaatgttc gcgagtaacg catgtacaag ctccgttagc ggagatgcgt ttttacaagc 4560 gacacctaaa atggctggcg ttctaatgac tagcctcatc tattcttctt cataacgtac 4620 agcaaagtct ctatagttgc tcaagactta atgagccaga tggtctcact ataccttc 4678 //