ID HQ607514; SV 1; linear; genomic RNA; STD; VRL; 4674 BP. XX AC HQ607514; XX DT 08-MAY-2011 (Rel. 108, Created) DT 08-MAY-2011 (Rel. 108, Last updated, Version 1) XX DE Trichomonas vaginalis virus 2 strain TVV2-UR1, complete genome. XX KW . XX OS Trichomonas vaginalis virus 2 OC Viruses; Riboviria; Totiviridae; Trichomonasvirus. XX RN [1] RP 1-4674 RX DOI; 10.1128/JVI.00220-11. RX PUBMED; 21345965. RA Goodman R.P., Freret T.S., Kula T., Geller A.M., Talkington M.W., RA Tang-Fernandez V., Suciu O., Demidenko A.A., Ghabrial S.A., Beach D.H., RA Singh B.N., Fichorova R.N., Nibert M.L.; RT "Clinical isolates of Trichomonas vaginalis concurrently infected by RT strains of up to four Trichomonasvirus species (Family Totiviridae)"; RL J. Virol. 85(9):4258-4270(2011). XX RN [2] RP 1-4674 RA Goodman R.P., Freret T.S., Kula T., Geller A.M., Demidenko A.A., RA Talkington M.W.T., Ghabrial S.A., Singh B.N., Fichorova R.N., Nibert M.L.; RT ; RL Submitted (12-NOV-2010) to the INSDC. RL Department of Microbiology and Molecular Genetics, Harvard Medical School, RL Armenise Building, Room 523, 200 Longwood Avenue, Boston, MA 02115, USA XX DR MD5; 3bb82f81e5bda1da091f29ed0c8a1783. DR EuropePMC; PMC3126235; 21345965. XX FH Key Location/Qualifiers FH FT source 1..4674 FT /organism="Trichomonas vaginalis virus 2" FT /host="Trichomonas vaginalis" FT /strain="TVV2-UR1" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="Jun-1999" FT /db_xref="taxon:674954" FT gene 297..4606 FT /gene="pol" FT CDS join(297..2379,2379..4606) FT /codon_start=1 FT /gene="pol" FT /product="RNA-dependent RNA polymerase" FT /note="translated via ribosomal frameshift" FT /db_xref="GOA:F5B2T4" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:F5B2T4" FT /protein_id="AED99806.1" FT /translation="MASTLISSDNSATLGKVNEVINNTDTSPPDTSPGDHSNPRLTKIL FT DEMSKKPCVNINEIRKMIRNFQPQIIQPRNGNRPANQPRTVDSFEWVVRIQSTVNTQLL FT GATNTIPEQTLNLDISFTDDSTTITPASIPGSISMLDNSRHIPAIQSMIQNFKARYLGN FT LQDTAQLNSPQYPQLLAYLFGQLIAIKDRLDLFRPSNPLSFADALFGFTLAQHAHPRYD FT DHRHAKACTGPIVIPAATNADCGPCGFVQINANQGLTLPLGACLFVNPETVNDQSFQDF FT LWLIFATHHRMPNQMQNDWPFALNIVSTCAAPGRQAPQAGQFTEARVKLALDTGHRILL FT SMFNDDEEALRYYQRKGIETMFRPCCFYTEGGLLRKATRYVSMVPLSGLYYYNGASSYV FT VSPIHTDAHPGITAAVESFVDIMVLQAVFSFSGPKVVAAKVDANQIDASSVFGPAVAEG FT DGFVYDPRRPAPPLSAFYTEFIHRPAEQRIFQMAMSQIYGSHAPLIIANVINSIHNCKT FT KIVNSKLRTAFVRRPPGAPPLKADTAIINRFHDPELAYALGILADGIAPLDGTHEYNIL FT DELDYLFNGGDIRNCFGLNALNTRGLGQIVHVRPKREPGKRPRRGYYTTLDGQVHSVTQ FT DAPLDEIYHWRDHGNLTRPYSCHILDSEGLQFADVSNGRTRGKILVVVNTPLKTSAAYQ FT GPQLRAKAGQRYVERINQCGGDVIYPRLSTARACSSSATDSTTSTLATQLCYLYKSSDL FT HRQLDITIPQSYLTFIEWLLRMNPDNEKNSIRHFPNHDDHEVITCSLRNLTKEQEIELF FT PIKDIIQANRRVNAYARNLLDASPLPDFALQQMLLPKTANDVVCGILLLGEVLWMLRCP FT ISIIVGISRAICRNDSFLKDLSDFNKMLGLTKIPIANCLTELNSLQGRGVTSSDAKRDL FT THRIDDVNPHEAKISRENLKQAINNIYREEISKKEVPDTFKQHVFSSPLWVKKGAHHHP FT HFESYDNRLEFVENVNLDRVLQSHPAVYITQASKLEHGKTRFIYNCDTISYIYFDYILN FT YIEGVWSNKHVLLNPDYMNPIIFSSLDYSEYCMLDFTDFNSQHSIENMKLVFSCLMPFL FT PYSMHSVLQWCVTSFDNMYINNIHWKSTLPSGHRATTFINSVLNRAYLLPFLQVSNAFH FT TGDDVLLCGKADYATLINTAPYELNKTKQSFGPSAEFLRLHKHNDQVSGYPARAISSLV FT SGNWLSYDNPLWQPSLLSIMQQLYTISARSGLLPFVPVTMKAEVRRRYDLPTRLTNGLF FT SGEIVPSGCPCYKSNAALLSAVIPDTVLKAKPKHYDLRTLDILKHTSPWINSESKYFDL FT LDRRHMESSKKNVLYSIQYLPSKMLPIIDVDPTEAFPPQKRYHPRSHIAHPLPREAHLK FT ELRFATCRVGPATAIRLGSLWPANRINLIRPVYV" FT gene 297..2426 FT /gene="cap" FT CDS 297..2426 FT /codon_start=1 FT /gene="cap" FT /product="capsid protein" FT /db_xref="UniProtKB/TrEMBL:F5B2T5" FT /protein_id="AED99805.1" FT /translation="MASTLISSDNSATLGKVNEVINNTDTSPPDTSPGDHSNPRLTKIL FT DEMSKKPCVNINEIRKMIRNFQPQIIQPRNGNRPANQPRTVDSFEWVVRIQSTVNTQLL FT GATNTIPEQTLNLDISFTDDSTTITPASIPGSISMLDNSRHIPAIQSMIQNFKARYLGN FT LQDTAQLNSPQYPQLLAYLFGQLIAIKDRLDLFRPSNPLSFADALFGFTLAQHAHPRYD FT DHRHAKACTGPIVIPAATNADCGPCGFVQINANQGLTLPLGACLFVNPETVNDQSFQDF FT LWLIFATHHRMPNQMQNDWPFALNIVSTCAAPGRQAPQAGQFTEARVKLALDTGHRILL FT SMFNDDEEALRYYQRKGIETMFRPCCFYTEGGLLRKATRYVSMVPLSGLYYYNGASSYV FT VSPIHTDAHPGITAAVESFVDIMVLQAVFSFSGPKVVAAKVDANQIDASSVFGPAVAEG FT DGFVYDPRRPAPPLSAFYTEFIHRPAEQRIFQMAMSQIYGSHAPLIIANVINSIHNCKT FT KIVNSKLRTAFVRRPPGAPPLKADTAIINRFHDPELAYALGILADGIAPLDGTHEYNIL FT DELDYLFNGGDIRNCFGLNALNTRGLGQIVHVRPKREPGKRPRRGYYTTLDGQVHSVTQ FT DAPLDEIYHWRDHGNLTRPYSCHILDSEGLQFADVSNGRTRGKILVVVNTPLKTSAAYQ FT GPSFAPKPGSAMWNE" XX SQ Sequence 4674 BP; 1358 A; 1244 C; 861 G; 1211 T; 0 other; gctttgaagg agtgacgacc ttcagagtcc aggcttaatt agcttggtca gatactcctg 60 gggtccatca ggaaacggat cgctaacgcg aactgggtat tagagtcaaa agccttgtgc 120 gccatggata cttggtacac ttcgcgggtg taggtgaccc gcaaggtgga cagttttgtg 180 tggattaaaa actgtactcc taactgctag ccttatgcgg ttgctgtgta ttgagagggc 240 ttatatgtag ctttcatgct tcacaacagc atgattgtcc gcatctaatt acgataatgg 300 cttcgacgct aatatcgtct gataattctg ccacgttagg caaagttaat gaagtaataa 360 ataacacaga tacttcacca cccgacactt cacctggtga tcattcaaat ccacgattaa 420 caaagatact agatgaaatg tccaaaaaac catgtgtaaa tattaatgaa ataagaaaaa 480 tgattagaaa tttccagcct caaattattc aacctcgtaa cggcaaccgc ccagccaatc 540 aaccacgtac agtagactct ttcgaatggg ttgttcgtat ccaaagtaca gttaatactc 600 aattacttgg cgcaacaaac acgattcctg aacaaaccct taatcttgat atctcattta 660 cagatgattc tactacaatt actccagcat ccattccagg ctccatttcc atgctcgaca 720 attcacgtca tatccctgcg attcagagca tgatccagaa tttcaaagcc cgttatttag 780 gcaacctcca ggatacagcc caactcaatt ctccgcagta tcctcagctt ctcgcctatt 840 tattcggaca attgatcgca atcaaagatc gcctcgatct cttccgcccg tcaaatccac 900 tctcatttgc tgatgctcta tttggcttta cattagctca acacgctcac cctcgctacg 960 atgaccacag acacgctaaa gcttgcacag gacctattgt cataccagct gccaccaatg 1020 ccgattgtgg tccttgcggt ttcgtccaga tcaatgctaa ccaaggtctc accttacctc 1080 tcggcgcttg ccttttcgtc aatcctgaaa cagttaacga ccagtccttc caagatttcc 1140 tttggcttat tttcgcgaca caccaccgca tgccaaacca aatgcaaaac gattggccat 1200 tcgctctcaa tatcgtttca acatgtgctg ctccaggtcg tcaggctcct caagctggtc 1260 agttcactga ggccagagtc aagcttgccc tcgatacagg tcatcgcatc ctactctcaa 1320 tgttcaacga tgatgaagaa gcactccgct attatcaacg caaaggaatc gaaacaatgt 1380 tcagaccatg ttgcttctac actgaaggcg gtttactcag aaaggccaca agatacgttt 1440 caatggttcc actcagcggc ttatactact acaatggcgc ctcttcatac gtcgtctctc 1500 caatccacac tgatgcacac ccaggaatca ctgcagcagt cgaatctttc gtcgatatca 1560 tggtcctaca ggcggtcttc tctttctcag gccctaaagt tgtcgccgct aaagttgacg 1620 caaatcaaat cgacgcctcc tcagtcttcg gccctgctgt tgcagaggga gatggttttg 1680 tctacgatcc ccgccgtcca gctcctccgc tttctgcgtt ctatactgaa ttcattcaca 1740 gaccagccga acaacgcata ttccagatgg cgatgagcca gatttacgga tcccacgctc 1800 ccctcatcat cgccaacgtc atcaattcca tccacaattg caagacaaaa atcgttaaca 1860 gcaaattacg caccgccttt gttcgtcgcc cacccggagc tcctcctctc aaagcagaca 1920 cagcaatcat caaccgcttc catgatccag aactcgcata tgctctcggc attctcgcag 1980 atggcattgc ccctctcgat ggaacacacg aatacaatat cctcgacgaa ctcgattact 2040 tgttcaacgg tggcgacatt cgcaattgtt tcggcctcaa cgcactcaac actcgcggat 2100 taggccagat cgtccacgtt cgtccaaaac gcgagccggg aaagagacct cgccgcggtt 2160 actacaccac tctcgacgga caggtccact ccgtcacaca agatgctcca ctcgatgaga 2220 tttaccactg gcgtgaccat ggaaatctca cacgtccata ttcgtgccac atcctcgaca 2280 gcgaaggatt acaattcgct gacgtctcca acggacggac acgaggtaaa atcctcgttg 2340 tcgtcaacac accgctcaag acaagcgctg cctatcaggg ccccagcttc gcgccaaagc 2400 cgggcagcgc tatgtggaac gaataaacca atgcgggggc gacgtcatct atccgcgctt 2460 gagcactgct cgcgcctgca gctcgtctgc cactgatagt acgacgtcga ccctcgcaac 2520 ccaactgtgc tacctataca agtcttctga cttacaccga cagttggaca tcacgatacc 2580 acaatcctac ttaacattta ttgaatggct actcagaatg aatcccgaca atgagaaaaa 2640 ttcaattcgt catttcccaa atcacgatga ccacgaagtt attacatgca gtttacgaaa 2700 tctcacaaaa gaacaagaaa ttgaactatt tccaataaag gacataatcc aagctaatcg 2760 tcgtgtaaat gcttacgcgc gaaatcttct tgatgcctca ccactccctg attttgctct 2820 acaacagatg cttttaccaa aaacagctaa tgatgtagtt tgcggaatcc tgttacttgg 2880 tgaagtatta tggatgcttc gctgcccaat ttctattatt gtaggcattt ctcgtgcaat 2940 atgtcgcaac gacagtttct taaaagattt atccgatttt aacaagatgt taggcttaac 3000 taagatccca atagctaact gcttgactga attgaacagt ttacagggtc gaggagtcac 3060 ttcaagcgat gccaaaagag atttgaccca ccgaatagac gatgtcaatc ctcatgaggc 3120 gaaaataagt agagaaaacc tcaaacaagc aatcaataac atatacagag aagaaatcag 3180 caaaaaagaa gttcccgata cattcaagca acacgtattc tcatctccat tatgggttaa 3240 gaaaggcgca caccaccatc ctcacttcga atcttacgac aatagattgg agtttgtaga 3300 aaatgtcaac ttagacaggg ttttacaatc acaccctgct gtttacatta cacaggcttc 3360 aaagctcgaa cacggtaaga cacgattcat ctacaattgt gatacaatta gttatatata 3420 tttcgactat atcttgaact acatcgaggg tgtctggtcc aataaacatg tgcttctaaa 3480 ccccgattac atgaacccga tcatcttcag cagtctcgat tatagtgagt actgcatgtt 3540 agatttcact gatttcaatt ctcagcattc catcgaaaac atgaagctag tcttttcctg 3600 tcttatgcct ttcttgcctt actcaatgca ttccgtgtta cagtggtgcg ttacatcatt 3660 tgacaatatg tacattaaca atatccactg gaaatcaacg ctaccatcag gccacagagc 3720 aacaacattc atcaactcag tactcaatag agcgtatcta ctaccattcc tacaagtatc 3780 aaacgcattt cataccggtg atgatgtact gctatgcggg aaggcagact atgccacttt 3840 aattaataca gcaccctatg aacttaataa gactaagcaa tcattcggac cctcagccga 3900 atttttacgc cttcacaaac acaacgacca ggtctcaggc tatcctgcgc gtgctattag 3960 cagtctcgta agtggaaact ggttgtcata cgacaatcca ttatggcaac cttcactact 4020 atcaatcatg caacaattgt acaccatatc agcgagatca ggtctattac cgtttgttcc 4080 cgttacaatg aaggcagaag ttcggcggcg atacgaccta cctacaagac tcacaaatgg 4140 attgttctct ggtgaaattg tcccaagcgg ttgcccatgt tataagtcaa atgctgcctt 4200 gctaagcgcg gttatcccag atacagtgct caaggcaaaa ccaaagcatt atgacttacg 4260 tactttggac atcctaaaac acacttcacc ttggatcaat tctgaatcca aatattttga 4320 tctcctagat cgccgacata tggaatcgag taagaaaaac gttttataca gtatccaata 4380 tttaccatcc aaaatgttac caattattga tgtcgacccc actgaggctt ttcctccaca 4440 aaaacggtat catccacgtt cccacatcgc acacccactc ccacgtgaag cacatcttaa 4500 ggaattaaga tttgcaacgt gcagagtggg cccggctaca gcgataagat taggatcgct 4560 ttggcctgcg aatagaatca acctaatcag gccagtgtac gtataagtac aactgccaaa 4620 aaaccttaca aaactactcg gctagagtag gagagtaata tcaactctta tgtc 4674 //