ID HQ606467; SV 1; circular; genomic DNA; STD; VRL; 2592 BP. XX AC HQ606467; XX DT 31-MAY-2011 (Rel. 109, Created) DT 31-MAY-2011 (Rel. 109, Last updated, Version 1) XX DE Tomato severe rugose virus isolate Pi-1 segment DNA A, complete sequence. XX KW . XX OS Tomato severe rugose virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2592 RA Barbosa J.C., Barreto S.S., Inoue-Nagata A.K., Rezende J.A.M.; RT "Complete molecular characterization of tomato isolate of Tomato severe RT rugose virus and experimental host range in Brazil"; RL Unpublished. XX RN [2] RP 1-2592 RA Barbosa J.C., Barreto S.S., Inoue-Nagata A.K., Rezende J.A.M.; RT ; RL Submitted (13-NOV-2010) to the INSDC. RL Plant Pathology and Nematology, Esalq/USP, Padua dias, 11, Piracicaba, Sao RL Paulo 13418-900, Brazil XX DR MD5; 35a15d25fcba3df7ff90a3a6686b8113. XX CC GenBank Accession Numbers HQ606467-HQ606468 represent the complete CC genome of Tomato severe rugose virus isolate Pi-1. XX FH Key Location/Qualifiers FH FT source 1..2592 FT /organism="Tomato severe rugose virus" FT /segment="DNA A" FT /host="tomato" FT /isolate="Pi-1" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collected_by="Julio C. Barbosa" FT /collection_date="Oct-2007" FT /db_xref="taxon:158463" FT gene 170..928 FT /gene="AV1" FT CDS 170..925 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:F6KSY5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:F6KSY5" FT /protein_id="AEG20847.1" FT /translation="MPKRDAPWRLTAGTSKVSRSVNFSPRAGYVPKYNKAAEWVNRPMY FT RKPRIYRTLRGPDVPRGCEGPCKVQSYESRHDVSHVGKVICVSDVTRGNGITHRVGKRF FT CVKSVYILGKVWMDESIKLKNHTNSVMFWLVRDRRPYSTPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNNVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT gene complement(922..1320) FT /gene="AC3" FT CDS complement(922..1320) FT /codon_start=1 FT /gene="AC3" FT /product="enhancer protein" FT /note="Ren" FT /db_xref="GOA:C4MDQ1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:C4MDQ1" FT /protein_id="AEG20848.1" FT /translation="MDSRTGELITARQAENGVYIWEISNPLYFKINRVEDPMYTASRVY FT HVQIRFNHNLRRALHLHKSFLNFQIWTTSLTASGTTYLSRFKYLVLLYLDRLGVISINN FT VIRAVRFATDKSYVNAVLENHSIKFKFY" FT gene complement(1067..1486) FT /gene="AC2" FT CDS complement(1067..1486) FT /codon_start=1 FT /gene="AC2" FT /product="transactivator protein" FT /note="Trap" FT /db_xref="GOA:F6KSY7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:F6KSY7" FT /protein_id="AEG20849.1" FT /translation="MQVLIIGQSTMRNSSSLTPPSIKVQHRAAKKRGIRRRRIDIECGC FT SIYVHIDCRGHGFTHRGTHHCTSGREWRLYLGDIKSPLFQDKQSGGSNVHREQSLPRPN FT TVQPQPEESIASPQELPQLPDMDDFTDSFWDDIFK" FT gene complement(1398..2456) FT /gene="AC1" FT CDS complement(1398..2456) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /note="Rep" FT /db_xref="GOA:C4MDQ3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:C4MDQ3" FT /protein_id="AEG20850.1" FT /translation="MPSAPKRFQIKAKNYFLTYPKCSLSKEEALSQLKTLNTPTNKKFI FT KVCRELHENGEPHLHVLLQFEGNYCCQNQRFFDLVSPTRSTHFHPNIQRAKSSSDVKSY FT VDKDGDTIEWGEFQIDGRSARGGCQTANDAAAEALNAPSKDVALQIIREKLPEKFLFQF FT HNLNSNLDRIFTRAPEPWAPTFPLSSFTSVPREMQAWADDYFGRGAAARPERPISIIIE FT GDSRTGKTMWARALGTHNYLSGHLDFNPRVYSNHVEYNVIDDIAPHYLKLKHWKELLGA FT QKDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLDKEENASLNNWTKHNAKFVFL FT NTPLYQGTTQSC" FT gene complement(2039..2302) FT /gene="AC4" FT CDS complement(2039..2302) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:F6KSY9" FT /protein_id="AEG20851.1" FT /translation="MKMGSLISTCFFNLRATTAAKINDSSTWSPQQGQHISIRTFRELS FT HRPTSNHMSTKTEILSSGGNSKSTEEVLEAVARQLMTLPQKP" XX SQ Sequence 2592 BP; 664 A; 527 C; 600 G; 801 T; 0 other; accggatggc cgcgcgattt ttcacttttt agtttcaatt aaagtaaagt gattgtctgt 60 ggcccaatca tattgggcct gtcgagctta gatatttgta acaacttaag gcccaagttg 120 ttaaacggct ataaattgaa catacacttt acttttgttt taattcaaaa tgcctaagcg 180 tgatgcccca tggcgtttaa cggcgggaac ttcaaaggtt tcccgctctg tcaatttttc 240 tccccgtgca ggatatgtac ccaaatataa caaggccgct gagtgggtga acaggcccat 300 gtacaggaag cccaggatct accgtacttt gagaggccca gatgttccta gaggctgtga 360 agggccttgt aaggttcagt cttacgagtc tcgtcatgat gtttcccatg tcgggaaggt 420 gatttgtgtg tctgacgtta cacgtggtaa cggtattact caccgtgttg gtaagcgttt 480 ctgcgtgaag tctgtatata ttttagggaa ggtatggatg gacgagagca tcaagttgaa 540 gaatcacaca aatagtgtga tgttctggtt ggttagagat cggagacctt attcgacacc 600 tatggatttt ggccaggtgt tcaacatgtt tgacaacgag cctagcactg caactgttaa 660 gaacgatctt cgggatcgtt ttcaggtcat gcacaagttt tatgccaagg ttactggtgg 720 acagtatgcc agtaatgagc aggcattagt gaagcgcttt tggaaggtca acaacaacgt 780 agtctacaac catcaggagg cagggaaata cgagaatcat actgagaacg ccttgctatt 840 gtatatggca tgtactcatg cctctaaccc cgtgtatgct acattgaaaa ttcggatcta 900 tttttatgat tcgattacta attaataaaa tttaaatttt attgaatgat tttcgagtac 960 agcatttaca tatgatttgt ctgttgcgaa acgaacagct ctgattacat tattaatgga 1020 aataacgcct aaacgatcta gatacaataa gactaaatat ttaaatctac ttaaatatgt 1080 cgtcccagaa gctgtcagtg aagtcgtcca tatctggaag ttgaggaagc tcttgtggag 1140 atgcaatgct ctcctcaggt tgtggttgaa ccgtatttgg acgtggtaga ctctgctcgc 1200 ggtgtacatt ggatcctcca ctctgtttat cttgaaatag aggggatttg atatctccca 1260 aatatagacg ccattctctg cctgacgtgc agtgatgagt tcccctgtgc gtgaatccat 1320 gtcctctgca gtcgatgtgt acgtaaatag agcacccgca ctctatatca attcgtcgtc 1380 tcctgatgcc tcgtttttta gcagctctgt gttgtacctt gatagagggg ggtgttaagg 1440 aagacgaatt tcgcattgtg ctttgtccaa ttattaagac ttgcattttc ttctttgtcg 1500 aggaaacatt tatagctggc cccctcgcca ggattgcaaa gcacgatgca tgggatacca 1560 cctttaattt gaactggctt tccgtatttg cagtttgatt gccaatcctt ttgggcccca 1620 agcaattctt tccagtgctt taactttaga tagtgcggtg cgatgtcatc aatgacgtta 1680 tattcaacat gatttgaata aaccctagga ttgaaatcta ggtgtccact caaataatta 1740 tgggtcccta atgcacgtgc ccacatcgtc tttcccgttc gagaatcacc ttcaatgatg 1800 atactaatag gtcgttccgg ccgcgcagcg gcacctctcc caaaatagtc atctgcccaa 1860 gcttgcatct ctctcggtac gctagtgaaa gaggagaggg gaaacgtagg ggcccatggc 1920 tccggagccc ttgtaaatat cctatctaaa ttactattta gattgtgaaa ctgaaataag 1980 aacttttcag gcagcttctc acggattatc tgcaaggcga cgtctttgga aggtgcgttc 2040 aaggcttctg cggcagcgtc attagctgtc tggcaaccgc ctctagcact tcttccgtcg 2100 atttggaatt ccccccactc gatagtatct ccgtctttgt cgacatatga tttgacgtcg 2160 gacgatgact tagctctctg aatgttcgga tggaaatgtg ttgaccttgt tggggagacc 2220 aggtcgaaga atcgttgatt ttggcagcag tagttgccct caaattgaag aagcacgtgg 2280 agatgaggct ccccattttc atggagctct ctgcaaacct tgatgaactt tttatttgta 2340 ggagtgttta gggtttttaa ttgggaaagt gcttcttctt tcgataatga gcatttggga 2400 tatgtgagga aataattctt cgcttttatt tgaaagcgct ttggagctga tggcatattt 2460 gtaaatatga cacttactac caattggtag ctgctctaaa actcatatga attggtagtt 2520 atggtagctc ttatatagta gaagttcctt ctaaggagag tgccacacgt ggcggccatc 2580 cgttataata tt 2592 //