ID HQ597033; SV 1; linear; genomic DNA; STD; VRL; 1539 BP. XX AC HQ597033; XX DT 25-MAY-2011 (Rel. 108, Created) DT 28-JUN-2015 (Rel. 125, Last updated, Version 2) XX DE Tomato leaf curl New Delhi virus isolate COB-3 pre-coat protein (AV2), coat DE protein (AV1), AC5 (AC5), AC3 (AC3), and AC2 (AC2) genes, complete cds; and DE AC1 (AC1) gene, partial cds. XX KW . XX OS Tomato leaf curl New Delhi virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-1539 RX PUBMED; 24813019. RA Saha A., Saha B., Saha D.; RT "Molecular detection and partial characterization of a begomovirus causing RT leaf curl disease of potato in sub-Himalayan West Bengal, India"; RL J Environ Biol 35(3):601-606(2014). XX RN [2] RP 1-1539 RA Saha B., Saha A., Saha D.; RT ; RL Submitted (12-NOV-2010) to the INSDC. RL Department of Botany, University of North Bengal, Siliguri, West Bengal RL 734013, India XX DR MD5; f6538dae30d66b801ea424c04f9ded66. XX FH Key Location/Qualifiers FH FT source 1..1539 FT /organism="Tomato leaf curl New Delhi virus" FT /segment="DNA-A" FT /host="Solanum tuberosum L." FT /isolate="COB-3" FT /mol_type="genomic DNA" FT /country="India:West Bengal" FT /collected_by="Bikram Saha" FT /collection_date="Dec-2009" FT /db_xref="taxon:223347" FT gene 56..394 FT /gene="AV2" FT CDS 56..394 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /note="structural protein" FT /db_xref="GOA:F6KSH2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:F6KSH2" FT /protein_id="AEF38360.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDL FT ILVLRAKNYGEATSRYHLFNARIESTPTSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQ FT KTQNVQNV" FT gene 216..986 FT /gene="AV1" FT CDS 216..986 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="structural protein" FT /db_xref="GOA:F6KSH3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:F6KSH3" FT /protein_id="AEF38361.1" FT /translation="MVKRPADIIFSTPVSKVRRRLNFDSPFGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVNSFESRHDVSHIGKVMCVSDVTRGSGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(246..731) FT /gene="AC5" FT CDS complement(246..731) FT /codon_start=1 FT /gene="AC5" FT /product="AC5" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:F6KSH4" FT /protein_id="AEF38362.1" FT /translation="MHVLHRCCARFIVKHVKNFSKILWRSCRTTVTDQKKHDTVSMVFC FT LDVFIHPYLPQHIDRFHTKSLPYPMGESRSSGNITNTHDFANMRNIVPRFKGIDLTRAF FT TAPWHVGTSIHSVHSGFSVHRPVGPGLCFCDAGNGDNCTSSKGAVEVETSAYFRYGR" FT gene complement(983..1393) FT /gene="AC3" FT CDS complement(983..1393) FT /codon_start=1 FT /gene="AC3" FT /product="AC3" FT /note="replication enahncer protein" FT /db_xref="GOA:F6KSH5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:F6KSH5" FT /protein_id="AEF38363.1" FT /translation="MIPDSRTGESITADRAESGVYTWEIRNPLYFKILKHNSRPFLRQH FT DIINIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLRYLDRLGVIGI FT YNVIRAVYHVLDNVMEQTIDVWTSYDIKLDIY" FT gene complement(1113..1532) FT /gene="AC2" FT CDS complement(1113..1532) FT /codon_start=1 FT /gene="AC2" FT /product="AC2" FT /note="transactivator protein" FT /db_xref="GOA:F6KSH6" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:F6KSH6" FT /protein_id="AEF38364.1" FT /translation="MQSLSHSKNHSIPVAKTSLPQKKKKSIRRRRIDLQCGCTFYISIH FT FHDPGFTHRGVHHCGSSREWRLYLGNSKSPVFQNFETQQQTLPKTARHHQYSNTIQPQP FT AESPGTSQVFSNFQNLDGLTPSDWDFLESLQNTGP" FT gene complement(1435..>1539) FT /gene="AC1" FT CDS complement(1435..>1539) FT /codon_start=1 FT /gene="AC1" FT /product="AC1" FT /note="replication-associated protein" FT /db_xref="UniProtKB/TrEMBL:F6KSH7" FT /protein_id="AEF38365.1" FT /translation="IKNAVFITLEEPLYSGRENIAPTEEEEEHSQEAN" XX SQ Sequence 1539 BP; 438 A; 317 C; 348 G; 436 T; 0 other; tttgctgcgg ggggaccaat aaatagactt actcaccctg tttggatcca caaacatgtg 60 ggatccatta ttgcacgaat ttccagaaag cgttcatggt ttaaggtgca tgctagctgt 120 aaaatatctc caagagatag aaaagaacta ttccccagac acagtcggat acgatcttgt 180 ccgagatctc attcttgttc ttcgagcaaa gaactatggt gaagcgacca gcagatatca 240 tcttttcaac gcccgtatcg aaagtacgcc gacgtctcaa cttcgacagc ccctttggag 300 ctcgtgcagt tgtccccatt gcccgcgtca caaaagcaaa ggcctggacc aacaggccga 360 tgaacagaaa acccagaatg tacagaatgt atagaagtcc cgacgtgcca aggggctgtg 420 aaggcccttg taaggtcaat tcctttgaat ctaggcacga tgtttctcat attggcaaag 480 tcatgtgtgt tagtgatgtt acccgaggat ctggactcac ccatcgggta gggaagcgat 540 tttgtgtgaa atctgtctat gtgctgggga agatatggat ggatgaaaac atcaagacaa 600 aaaaccatac taacagtgtc atgttttttt tggtccgtga ccgtcgtcct acaggatctc 660 cacaagattt tggagaagtt tttaacatgt ttgacaatga accgagcaca gcaacggtga 720 agaacatgca tcgtgatcgt tatcaagtct tacggaagtg gcatgctact gtgacgggag 780 gaacatatgc atctaaggag caagcattag ttaggaagtt tgttagggtt aataattatg 840 ttgtgtataa ccaacaagag gccggcaagt atgagaatca tactgagaac gcattaatgt 900 tgtatatggc ctgtactcat gcatcaaatc ctgtgtatgc tactttgaaa atccggatct 960 atttctatga ttcggtaaca aattaataaa tatcgagttt tatatcatat gaagtccata 1020 catcaatcgt ttgttccatt acattatcca aaacatgata aactgctctt attacattat 1080 aaattcctat tacaccaagc ctatccaggt acctaaggac ctgtgttttg aagactctca 1140 agaaaatccc aatctgaggg cgtaagcccg tccagatttt gaaagttaga aaacacttgt 1200 gaagtcccag ggctttccgc aggttgtggt tgaattgtat ttgaatattg atgatgtcgt 1260 gctgtcttag gaagggtctg ctgttgtgtt tcaaaatttt gaaatacagg ggatttcgaa 1320 tttcccaggt ataaacgcca ctctctgctc gatccgcagt gatggactcc cctgtgcgtg 1380 aatccgggat catggaagtg gatcgatatg taaaacgtac acccacactg caaatcaatt 1440 cgcctcctgc gaatgctctt cttcttcttc tgtgggagcg atgttttcgc gaccggaata 1500 gagtggttct tcgagtgtga taaagactgc attcttgat 1539 //