ID HQ597032; SV 1; linear; genomic DNA; STD; VRL; 1899 BP. XX AC HQ597032; XX DT 25-MAY-2011 (Rel. 108, Created) DT 25-MAY-2011 (Rel. 108, Last updated, Version 1) XX DE Tomato leaf curl New Delhi virus isolate SILIGURI-2 AV3 (AV3), pre-coat DE protein (AV2), coat protein (AV1), AC5 (AC5), AC3 (AC3), and AC2 (AC2) DE genes, complete cds; and AC1 (AC1) gene, partial cds. XX KW . XX OS Tomato leaf curl New Delhi virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-1899 RA Saha A., Saha B., Saha D.; RT "Geminiviruses infecting cultivated tomato plants of sub-Himalayan plains RT of East-India: occurrence, detection, host range and diversity analysis"; RL Unpublished. XX RN [2] RP 1-1899 RA Saha B., Saha A., Saha D.; RT ; RL Submitted (12-NOV-2010) to the INSDC. RL Department of Botany, University of North Bengal, Siliguri, West Bengal RL 734013, India XX DR MD5; 8f776c5b5e77289ed6b483c62474acd1. XX FH Key Location/Qualifiers FH FT source 1..1899 FT /organism="Tomato leaf curl New Delhi virus" FT /segment="DNA-A" FT /host="Lycopersicon esculentum L." FT /isolate="SILIGURI-2" FT /mol_type="genomic DNA" FT /country="India:West Bengal: Siliguri" FT /collected_by="Bikram Saha" FT /collection_date="Feb-2010" FT /db_xref="taxon:223347" FT gene 46..432 FT /gene="AV3" FT CDS 46..432 FT /codon_start=1 FT /gene="AV3" FT /product="AV3" FT /db_xref="UniProtKB/TrEMBL:F6KSG5" FT /protein_id="AEF38353.1" FT /translation="MKFTLHGLFSAWGSINRLAHQVWIHKHVGSIIARISRKRSWSKVH FT ASCKISPRDRKELFPRHSRLRSCPRSHSCSPSKELWRSDQQISSFQRPHRRYADVSTST FT APMELVQLSPLPASQKQRPGPTGR" FT gene 125..463 FT /gene="AV2" FT CDS 125..463 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /note="structural protein" FT /db_xref="GOA:F6KSG6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:F6KSG6" FT /protein_id="AEF38354.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDL FT ILVLRAKNYGEATSRYHHFNARIEGTPTSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQ FT KTHNVQNV" FT gene 285..1055 FT /gene="AV1" FT CDS 285..1055 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="structural protein" FT /db_xref="GOA:F6KSG7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:F6KSG7" FT /protein_id="AEF38355.1" FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPTMYRMYRSPHVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYLLGTCTYNENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(315..800) FT /gene="AC5" FT CDS complement(315..800) FT /codon_start=1 FT /gene="AC5" FT /product="AC5" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:F6KSG8" FT /protein_id="AEF38356.1" FT /translation="MHVLHRCCARFIVKHVKNFPKILRGSCRTTVTDQKKHDTVSMVFC FT LDVFIICTSAQQIDRFDTKSLPYAMCESSSSSNITNAHDFANVRDIVPRFKGLHLARAF FT TAPWHVGTSIHSVHCGFSVHRPVGPGLCFCDAGNGDNCTSSIGAVEVETSAYLRCGR" FT gene complement(1052..1462) FT /gene="AC3" FT CDS complement(1052..1462) FT /codon_start=1 FT /gene="AC3" FT /product="AC3" FT /note="replication enahncer protein" FT /db_xref="GOA:F6KSG9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:F6KSG9" FT /protein_id="AEF38357.1" FT /translation="MITDSRTGEYITAERAESGVYTWEIRNPLYLKLLKHDSRPFLTQH FT DIIKIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQTGIFLRVFKTQVLRYLDMLGVIGI FT YNVIRAVYHVLDNVMEQTIDVQTSYDIKLDIY" FT gene complement(1182..1601) FT /gene="AC2" FT CDS complement(1182..1601) FT /codon_start=1 FT /gene="AC2" FT /product="AC2" FT /note="transactivator protein" FT /db_xref="GOA:F6KSH0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:F6KSH0" FT /protein_id="AEF38358.1" FT /translation="MQTSTHSGKHSIPVAKTSLPQKKKKSIPKRRVDLPCGCTYYISIN FT CHDHGFTHRGVHHCGTSREWRIYLGNSKSPVSQTFEARQQALPNTARHHQDSNTIQPQP FT AESPGTSQVFSNFQNLDGLTPSDWDFLESLQNPGP" FT gene complement(1504..>1899) FT /gene="AC1" FT CDS complement(1504..>1899) FT /codon_start=1 FT /gene="AC1" FT /product="AC1" FT /note="replication-associated protein" FT /db_xref="GOA:F6KSH1" FT /db_xref="InterPro:IPR001301" FT /db_xref="UniProtKB/TrEMBL:F6KSH1" FT /protein_id="AEF38359.1" FT /translation="ARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPQYLKQFKEFM FT GAQRGWKSKPSHGKPVSVNGGIPTIFLCNKGPHGHHKEYLDEEKNESRNQWAIQNANFN FT TLGEALYSGREDLPPTEEEEEHSQEAS" XX SQ Sequence 1899 BP; 515 A; 422 C; 423 G; 539 T; 0 other; atttttcctg atggccgcgc aaatttataa gtgggccctc aaccaatgaa attcacgcta 60 catggcctat ttagtgcgtg gggatcaata aatagacttg ctcaccaagt ttggatccac 120 aaacatgtgg gatccattat tgcacgaatt tccagaaagc gttcatggtc taaggtgcat 180 gctagctgta aaatatctcc aagagataga aaagaactat tccccagaca cagtcggcta 240 cgatcttgtc cgagatctca ttcttgttct ccgagcaaag aactatggcg aagcgaccag 300 cagatatcat catttcaacg cccgcatcga aggtacgccg acgtctcaac ttcgacagcc 360 cctatggagc tcgtgcagtt gtccccattg cccgcgtcac aaaagcaaag gcctggacca 420 acaggccgat gaacagaaaa cccacaatgt acagaatgta tagaagtccc cacgtgccaa 480 ggggctgtga aggcccttgc aaggtgcagt cctttgaatc taggcacgat gtctctcaca 540 ttggcaaagt catgtgcgtt agtgatgtta ctcgaggaac tggactcaca catcgcgtag 600 ggaagcgatt ttgtgtcaaa tctgtctatc tgctgggcac ttgtacatat aatgaaaaca 660 tcaagacaaa aaaccatact aacagtgtca tgtttttttt ggtccgtgac cgtcgtccta 720 caggatcccc tcaagatttt ggggaagttt ttaacatgtt tgacaatgaa ccgagcacag 780 caacggtgaa gaacatgcat cgtgatcgtt atcaagtctt acgtaaatgg catgcgactg 840 tgacgggagg aacttatgca tctaaggagc aagcattagt taggaagttt gttagggtta 900 ataattatgt agtttacaat caacaagagg ccggcaagta tgagaatcat actgaaaatg 960 cattaatgtt gtatatggcc tgtactcatg catcaaatcc tgtgtatgct actttgaaaa 1020 tccggatcta tttctatgat tcggtaacaa attaataaat atccagcttt atatcatatg 1080 aagtctgtac atcaatcgtc tgttccatta cattatccaa aacatgataa actgctctta 1140 ttacattata aattcctatt acaccaagca tatccaggta cctaaggacc tgggttttga 1200 agactctcaa gaaaatccca gtctgagggc gtaagcccgt ccagattttg aaagttagaa 1260 aacacttgtg aagtcccagg gctttccgca ggttgtggtt gaattgtatt tgaatcttga 1320 tgatgtcgtg ctgtgttagg aagggcctgc tgtcgtgctt caaaagtttg agatacaggg 1380 gatttcgaat ttcccaggta tatacgccac tctctgctcg ttccgcagtg atgtactccc 1440 ctgtgcgtga atccgtgatc atggcagttg atcgatatat aatacgtaca cccacacggc 1500 agatcaactc gcctcttggg aatgctcttc ttcttcttct gtgggaggga ggtcttcgcg 1560 accggaatag agtgcttccc cgagtgtgtt gaagtttgca ttctggattg cccactggtt 1620 ccgtgattca tttttctctt cgtctaaata ttctttatga tggccatgtg gacctttatt 1680 gcacaggaag atagtgggaa ttccaccgtt aacacttact ggcttaccgt ggctgggctt 1740 gcttttccag cctcgctggg cccccatgaa ttctttaaat tgctttagat attggggatc 1800 aacgtcatca atgacgttgt accaggcatc attgctatac acctttgggc tcagatcaag 1860 atgtccacac aagtaattgt ggggtcctaa gcatcgagc 1899 //