ID HQ593109; SV 1; circular; genomic DNA; STD; VRL; 7401 BP. XX AC HQ593109; XX DT 04-MAY-2011 (Rel. 108, Created) DT 04-MAY-2011 (Rel. 108, Last updated, Version 1) XX DE Banana streak UL virus, complete genome. XX KW . XX OS Banana streak UL virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7401 RA James A.P., Geijskes R.J., Dale J.L., Harding R.M.; RT "Molecular characterisation of six badnavirus species associated with leaf RT streak disease of banana in East Africa"; RL Ann. Appl. Biol. 158(3):346-353(2011). XX RN [2] RP 1-7401 RA James A.P., Geijskes R.J., Dale J.L., Harding R.M.; RT ; RL Submitted (07-NOV-2010) to the INSDC. RL Centre for Tropical Crops and Biocommodities, Queensland University of RL Technology, 2 George St, Brisbane, Queensland 4001, Australia XX DR MD5; e94d8be4895afc8e8e175b8a71473805. XX FH Key Location/Qualifiers FH FT source 1..7401 FT /organism="Banana streak UL virus" FT /host="Musa sp. cv. Kibuzi" FT /mol_type="genomic DNA" FT /country="Uganda" FT /collection_date="Apr-2008" FT /db_xref="taxon:1016856" FT CDS 532..1092 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF I protein" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:F5AY22" FT /protein_id="AEC49879.1" FT /translation="MTSETEWEQKFLVWKNSHTGIEADQALIQGSKIKNHELNHNIRVT FT CYRSDLGYKVLLTSQEKAKAHRSELFSLLREHNIAHNRHLKEVEKEAKEAVKISRSQRS FT EIKNLKLQLDVISEELQALRRDYLERRPLNKGDVEQLVLQITEQPKFIEKQTEALLEDV FT SKLVVSVKREVNQVQQMLDLMRG" FT CDS 1089..1427 FT /codon_start=1 FT /product="virion associated protein" FT /note="ORF II protein" FT /db_xref="UniProtKB/TrEMBL:F5AY23" FT /protein_id="AEC49880.1" FT /translation="MSISNTDYTSALEKTKNIFGNTSVGFVGENPSQTSTAKQLNTLIQ FT LVIQVHTKLGVIEDEVKRLKERLPTTGTSTGGKDYLADLDDITKRLSNLKVTKEPVVQG FT TLKVLKKF" FT CDS 1430..6931 FT /codon_start=1 FT /product="polyprotein" FT /note="encodes movement protein, coat protein, aspartic FT protease, reverse transcriptase and RNase H; ORF III" FT /db_xref="GOA:F5AY24" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR001995" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:F5AY24" FT /protein_id="AEC49881.1" FT /translation="MAFTGQGRRLGTGSTTVLEDNTILSDQIRDYNRRQRAKHEMQNIV FT AKPSAIFKRIIGGSQSEKTLEMVLDPEAELEKSMKRRAKAFPAEVVYAPRSDNKLHKVF FT QGRTSQDIMVVDDNQLDMTFIREETFEQLERAGLRYIHIGTLQVRIQPLHQRWSGTMAF FT IAFQDTRSQPATVIAAMEVDLSKGAQMIYIIPDFMTTIGDFYQGIQLSIKTKGYNNWRG FT EANLHLERMVTARLSSTSNTGFEIKIDKVVQFIRTNGIKAIEAEKKSVKQFQGKEWNIQ FT PIKVEVAMKPNKMTITDEYDNSKSFRFGHYQASSNQPAPEYNSEDEIIQEEVRMTLCES FT EDEDEGISALQEIENFLSALPPEGGGSNFSAARCSENCEDDEESIINDFLKLSHEEVYM FT AEEDSDYPAIRKLEELIKQEEVRMSDTGSSAMIPADIDMEGDLPRYAPAQGQTGWSDYN FT PQQKHFGGTSKKWSNPVNHWNLPSANAANGSMLVLSIGKNNDIFERWESSTLNYMASQN FT ISGSEEKIARIENLLGETEKKTFIGWRMAYTTEFELLKAQAIGVNGTQNVISQIRRILL FT GDSPKQGTTLTQDAAYKRIKSLVCTELSYPAIMRYLVGYFHLSARTGRMWSSKELSDEF FT FTKLPDEISDSAKEAFDKKFPGTNIHVPARIEFTYNYLEEICTENNKQRRLGKLNFCRG FT FPVINPLSKKYKSLGTRRTTTYKGKPHHTHARIDRRKYLQARKKNCRCYVCGEEGHFAK FT ECKSQKKIQERVNIVNELDIPEGYDIVSVGYDEKSVEDIFSISEGEDQQAHILKEEDEQ FT LPTTPLSWEDWENYYKKEFLYMAEIEEVSSEEEKEDNGPWLVGKEGGFMYQMKVSRKQY FT HCQHEWFYNQPKARVCQRCFCKASKGQYIICGKCKVKVCNLCSDYCYGISLVKKEEDPE FT VDYKSLAASLISENERLKLEKKVLLEELNKEILEKNQLRNELPVIEETNSEAALEIDML FT QEVVTSLQRQLEQKDQIIIQLTNKLKGYEQASSSSEKILMAKEKLQETVLISARKDPMY FT RFDVHVEVEGKKTKLKALLDTGATKSCINIDHLDQSYLTDSKFAVDIEGVNSSTRVTKQ FT LKEAKLWVGGTFFTLPITYVGKLDLGERTQMVIGCNFIQSLRGGLRLEGRTVTFYKLTT FT HVQADEYLKMAEEQLMIAQQPSPFIEKSFMTRNKEIINEMKELGYIGDEPLRYWANNKV FT KCHIRIKNPELTIQDKPHKFVTPQMKEQMQKHMDELLKRKVIRPSSSRHRTNAFIVNSG FT TTVDPLTKKEIKGKPRLVFNYKRLNDNTEKDQYSLPGINGLLKSVGNAKIYSKFDLKSG FT FHQVAMEEESIEWTAFWAFTGLYEWLVMPFGLKNAPAIFQRKMDNCFRGTEKFITVYID FT DILVFSETEEEHAIHLTKMLEICKRNGLILSPTKMKIGVKVIDFLGSTIGQNQLDLQPH FT IVQKIVDFSEEKLKTKEGLKSWLAILNYARGHIKNLGRTLGPLYPKTSEKGERSLNSED FT WRIIRRMKQEVQKLPKLSIPPQDAYIVIETDGSMNGWGGICCWKKSKNDPRSTEQICRY FT ASGKFAKPKSTIEAEITGVLQSLEKFRLYYIDKAEITVRTDSSAIERFYNKSTEHKPSE FT VRWIHFMDVISGAGPEIKFEHIKGKENTLADLLSRLNKVLKVEASTEMITLARALREID FT YDQDHPAFKKIHEYSQKVKWPQVTAKEVICMADVKEIAPLCNCSKPAMLRTSMTSRSPN FT RQFWNCAEKRCHAWWWYDNLEGYIKNEVDKRLQRILAEQDEEFEELCEIYKELEQQEIL FT RNQATDDPLDWNEVSNDD" XX SQ Sequence 7401 BP; 2709 A; 1334 C; 1625 G; 1733 T; 0 other; tggtatcaga gcaaggtatg atttaatggc ttttatgggg taaatccctt agataggagc 60 ctgagggctc tgctttctat gttaaagaca actacttgtg caagtttgat gattgataag 120 tcgaataggt gaactttatc tcctgaatta gcagttttat tagaagtcgc ttacaggcta 180 ggaggaagct tggtttcata ctatccaaag aacaccataa tgcatgagaa agtagaggca 240 tagacataaa agtacccgtc aaggcaggaa ggccgctaag gggaaaatgt cacattgctg 300 aggatatcat gctgtgtgtt taaaggaagt atatgtgcct tatagctact agctaaagac 360 ttcgaagacg ctgctataat aaggatcaag ataaaactat atcctagtaa gatgtaagat 420 caaatataac ctctggaact ggggtagaag tctggaactg ggaagcatcc caaggggttc 480 tcctatcttg tttatcataa gaaaagtcat taagttttat ttaaccgttg catgacatct 540 gaaaccgagt gggaacaaaa atttcttgtt tggaaaaact ctcatactgg aatagaagct 600 gatcaggctt taattcaagg atctaagatc aaaaaccacg aacttaatca caatattcgt 660 gttacctgtt atagatcgga tcttggatac aaagtgctac taacatcgca ggaaaaggcg 720 aaggcacata gaagtgagct attctctttg ttaagagaac ataatatagc gcacaaccga 780 catctgaagg aagtcgaaaa agaagcaaag gaggctgtta aaatatccag atcccagaga 840 tctgagatca aaaacctcaa gctccaactg gacgtcatct ctgaggagct gcaagctctc 900 aggagagact atcttgaacg gcgacctctc aacaaaggcg acgttgagca attggtgttg 960 caaatcacag aacagccaaa gtttatcgag aagcaaactg aagctttgct agaagacgtc 1020 tctaaactgg tggtatctgt taaaagagaa gtcaatcaag tacaacaaat gttggatctg 1080 atgagaggat gagcatctct aacacagact acacaagcgc cctcgagaaa accaaaaaca 1140 tctttggaaa cactagtgtt gggtttgtgg gagaaaatcc ttctcaaaca tctactgcaa 1200 aacagctgaa cacacttatt cagctagtga ttcaagtaca caccaaattg ggagtgattg 1260 aagacgaggt caaaaggcta aaggaaagac ttccaactac cggtacatca actggtggga 1320 aagactactt agcagatctt gacgacatca caaaaagact atcaaatcta aaggtgacaa 1380 aagaaccagt ggttcaagga actctgaagg ttcttaagaa attttaaaga tggcattcac 1440 aggccaagga agaaggctcg ggactggttc cacaacagtc ctagaagaca acacaatcct 1500 ctctgaccaa atcagagact acaacagaag acaaagagcc aagcacgaga tgcagaatat 1560 cgttgcaaaa ccttctgcaa tttttaaaag gataattgga gggagtcaat ctgaaaagac 1620 cctagaaatg gtgctagatc cagaagctga gctggaaaaa tcaatgaaaa ggagagctaa 1680 agcattccca gctgaagtag tatatgcacc aagaagtgac aacaagctgc ataaagtctt 1740 ccaaggaaga acaagtcaag acatcatggt tgttgatgat aaccaactgg atatgacctt 1800 catcagagaa gaaacctttg agcaattgga gagagctgga ctccggtata ttcatatcgg 1860 aacgttacaa gtaagaatac agcctctaca tcaaagatgg tctggaacca tggctttcat 1920 tgcattccaa gatacaagga gccaaccagc cacggtaata gcagctatgg aagtagatct 1980 gagtaaagga gctcagatga tttatataat cccagatttc atgactacaa ttggggattt 2040 ctatcaaggt atccagttat caatcaaaac aaaagggtac aacaactggc gtggagaggc 2100 taatctccac ttagaaagga tggtaacagc aagattatcc agtacctcaa acactggatt 2160 tgagataaag attgacaaag tggtgcaatt cattagaaca aatggcatca aggccattga 2220 agctgagaag aaatctgtca agcaatttca aggaaaagaa tggaacatcc agcccatcaa 2280 agttgaagtt gccatgaaac ctaacaagat gacaatcact gatgagtatg acaactccaa 2340 atcttttagg tttggacatt atcaagcttc aagtaatcag ccagcaccag agtacaatag 2400 tgaagatgag attatacaag aagaagtccg catgacccta tgcgaatctg aagacgaaga 2460 tgaagggatc tcagcccttc aagaaattga gaatttcttg tctgcacttc ccccggaggg 2520 tggagggagt aatttttctg ccgcaaggtg ttctgaaaat tgtgaagacg acgaagaaag 2580 tatcatcaat gactttctga aactctcaca tgaagaagtt tatatggcag aagaagattc 2640 tgactaccca gcaatcagga aactggaaga attgataaag caagaagaag tcagaatgag 2700 tgacacagga tcatcagcta tgattccagc tgatattgat atggagggtg atctgccaag 2760 atatgcacct gcacaagggc aaacgggttg gtcggattac aaccctcagc aaaagcattt 2820 tggtggaaca tcaaagaagt ggagcaaccc agttaaccac tggaatttgc caagtgccaa 2880 tgcagcaaac ggatctatgt tggtcttatc tattggcaaa aataatgata tctttgagag 2940 atgggagtca tcaactctca attatatggc ttcacaaaat atatctggct cagaggaaaa 3000 gattgccagg attgaaaatt tattgggaga aacggagaag aaaaccttta ttggatggag 3060 aatggcctac accacagagt tcgaattatt aaaggctcaa gccataggag tcaatggaac 3120 tcagaatgtg atctcccaaa tcagaagaat attgctagga gacagcccaa aacaaggaac 3180 tacactaact caagatgcag catataaaag gatcaaatct ttggtctgca cagagctatc 3240 atatccagca ataatgagat atcttgtggg atattttcat ctatccgcaa gaacaggaag 3300 gatgtggtct tcaaaggaat tatcagatga atttttcacc aaactgcctg atgaaatcag 3360 cgactcagca aaggaagcct tcgataagaa gttcccaggt acgaatatac atgtcccagc 3420 aagaattgag tttacataca attacctaga ggaaatatgc acagaaaata ataagcaaag 3480 aaggctagga aagttaaatt tctgcagagg attcccagtc attaatcctc taagcaagaa 3540 atacaagtca ctagggacca gaagaaccac aacatataag ggcaaaccac accacacgca 3600 tgcccgtatt gacagaagaa agtatctaca agcaaggaag aaaaattgta gatgctatgt 3660 ttgtggagaa gaaggacatt ttgccaaaga atgcaagtcc caaaagaaaa ttcaagaaag 3720 ggtaaatatt gtcaacgaat tagatattcc tgaagggtat gacattgttt cagtaggcta 3780 cgatgaaaag agtgttgagg acatctttag catctctgaa ggagaagatc aacaagctca 3840 tatcttaaag gaagaagatg aacagttacc cactacacct ttatcatggg aagattggga 3900 aaattattat aagaaggaat tcttatatat ggctgaaatt gaagaagttt cttcggagga 3960 agaaaaggaa gataatggac cctggctagt aggaaaagaa ggaggattca tgtatcaaat 4020 gaaagtctca aggaagcaat atcactgcca acatgaatgg ttttacaatc aaccaaaagc 4080 cagagtttgt caaaggtgct tctgtaaagc atctaaggga caatatataa tctgtggaaa 4140 atgcaaagtc aaggtttgca acttatgctc agattattgc tatggaatat ctctagttaa 4200 gaaagaagaa gacccagaag tagactacaa aagcttagca gccagtctta tatctgaaaa 4260 tgagaggctg aagctagaaa agaaggtgct actggaagaa ctaaataaag agatactgga 4320 gaaaaatcag ctgagaaacg aattgccagt cattgaagaa acaaactccg aagctgcact 4380 agagattgac atgttacaag aagtagtaac aagcttacag agacagttag agcaaaagga 4440 tcaaataata atacagctca caaacaagct taaaggctat gaacaagcat catcaagctc 4500 agaaaagatc cttatggcaa aagaaaaact acaggaaaca gtcctaatct cagcaaggaa 4560 ggatccaatg tacaggtttg acgtacatgt ggaagttgaa ggaaagaaga ctaagcttaa 4620 ggcgttgcta gacacaggag caaccaagtc ttgcatcaat attgaccatc ttgatcaaag 4680 ctatttgaca gattcaaaat tcgcagtaga tattgaagga gtaaattcat caacaagagt 4740 caccaagcaa ctcaaggagg ctaagttatg ggtaggaggt acattcttca cacttcccat 4800 tacttatgtt ggaaaattag atcttggcga aaggactcaa atggttattg ggtgcaactt 4860 cattcaatct ttaagaggag gtttgagatt agaaggaaga acagtcacct tctacaagct 4920 caccacccat gttcaagcag atgagtatct aaagatggct gaagaacagc tgatgattgc 4980 acagcaacct tcacctttca ttgaaaaatc atttatgaca aggaacaagg aaatcataaa 5040 tgagatgaag gaattaggat acattggtga tgaaccatta aggtactggg caaacaacaa 5100 ggtcaaatgc cacatcagaa tcaagaatcc tgagctcact attcaggaca agcctcacaa 5160 gtttgtgaca ccacagatga aggaacaaat gcagaaacac atggatgaat tactaaagag 5220 aaaggtaata agaccctcat ccagtagaca tagaacaaat gccttcattg tgaattcagg 5280 aacaacagtt gaccccctga cgaagaaaga aatcaaagga aagccaagac tagtattcaa 5340 ctataaaagg ttgaatgaca atactgagaa ggatcagtac tctcttcccg gcataaatgg 5400 gctactaaaa tcagtaggta acgcaaagat ttattcaaaa tttgatctta agagcggatt 5460 tcatcaagta gcaatggaag aagaatcaat cgaatggaca gctttttggg cgttcacagg 5520 gctatacgaa tggctagtca tgccatttgg actcaaaaat gctccagcaa tcttccagag 5580 aaaaatggat aactgcttca gaggtactga aaaatttatt acggtttata ttgatgatat 5640 cctggttttt tcagaaactg aagaagaaca tgcaatccat ctcacaaaaa tgctggaaat 5700 ctgcaaaagg aatggattaa tcctaagccc taccaagatg aagattggag ttaaagtaat 5760 tgatttcttg ggaagtacaa ttggacaaaa ccagctggac ttacaaccac atattgtgca 5820 gaaaatagta gatttcagtg aagaaaagct caaaacaaaa gaaggattaa agtcctggtt 5880 agcaattctg aattatgcca gaggacatat caaaaatttg ggaagaacac taggaccatt 5940 atatcccaaa acatcagaaa aaggagagag aagtctgaat tcagaagact ggaggattat 6000 aagaagaatg aagcaagagg tacaaaaact accaaagctt tcaatacccc cgcaggatgc 6060 gtacatagtc attgagacgg atggttcaat gaatgggtgg ggaggaattt gctgttggaa 6120 gaaaagcaaa aatgatccaa gaagtactga acaaatctgc aggtatgcaa gtggaaaatt 6180 tgcaaaacca aaatccacaa tcgaagcaga aatcacagga gtacttcaaa gcctggaaaa 6240 attcagatta tattacattg acaaagctga aatcacggtc agaactgaca gtagcgcaat 6300 cgaaagattt tacaataaaa gcactgagca caagccttca gaggtaagat ggatacattt 6360 catggatgtc atctctggtg cagggccaga aatcaagttt gagcatatta aaggcaaaga 6420 aaatacattg gctgatctat tatcaagact aaacaaagtc ttaaaggtag aagcttcaac 6480 ggaaatgatt actttggcta gggccttacg agaaattgat tatgatcaag atcatccagc 6540 cttcaagaaa atccatgaat attctcaaaa ggttaagtgg ccgcaagtta cagcaaagga 6600 agtaatatgc atggctgatg ttaaggagat tgcccctttg tgcaattgtt ctaaaccagc 6660 aatgttacga acttccatga cctcccgaag tccaaacaga cagttttgga attgtgcgga 6720 aaagagatgt cacgcctggt ggtggtatga caatttagaa ggctacatta aaaatgaagt 6780 tgataaaagg ctacaaagga tattggctga acaagacgaa gaattcgagg aattatgtga 6840 aatctacaag gagctagaac aacaagaaat cctcaggaat caagctacag atgatccttt 6900 ggattggaat gaggtaagca atgacgactg aagaagcaaa aacgtcagga atgacgtata 6960 agcgcaccat aggatggcac taacttatgt gacagcttgc aagatgcctt caccaaccgg 7020 taggtaggca gaataatgga tctgcgaatc tacttttgta aagaggcctg cgtgccttct 7080 aagcaaagtc ttaggtgcga tgctgcgtca cgcacgatgg actgctttgt aactttagtc 7140 cagagcatct tgtgctttac tggtattatt ggtgacgatg gggcccagag tgcacccggc 7200 cacgatactc aggcaagcca agtcctctat ataaggacat attgtatgct cttacaggca 7260 tcgacccccc aaagtcttat gcctatttga gctttcaggc ttgataagta agaaaaccaa 7320 tttccgctac tctgttattc ccggatttct agtagttgca agtgagacga acgatcttcg 7380 gaggaaacga tccgccgata g 7401 //