ID HQ593108; SV 1; circular; genomic DNA; STD; VRL; 7458 BP. XX AC HQ593108; XX DT 04-MAY-2011 (Rel. 108, Created) DT 04-MAY-2011 (Rel. 108, Last updated, Version 1) XX DE Banana streak UI virus, complete genome. XX KW . XX OS Banana streak UI virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7458 RA James A.P., Geijskes R.J., Dale J.L., Harding R.M.; RT "Molecular characterisation of six badnavirus species associated with leaf RT streak disease of banana in East Africa"; RL Ann. Appl. Biol. 158(3):346-353(2011). XX RN [2] RP 1-7458 RA James A.P., Geijskes R.J., Dale J.L., Harding R.M.; RT ; RL Submitted (07-NOV-2010) to the INSDC. RL Centre for Tropical Crops and Biocommodities, Queensland University of RL Technology, 2 George St, Brisbane, Queensland 4001, Australia XX DR MD5; d14a045f752140556610da418e94a3b5. XX FH Key Location/Qualifiers FH FT source 1..7458 FT /organism="Banana streak UI virus" FT /host="Musa sp. cv. Kisansa" FT /mol_type="genomic DNA" FT /country="Uganda" FT /collection_date="Apr-2008" FT /db_xref="taxon:1016855" FT CDS 502..1062 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF I protein" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:F5AY19" FT /protein_id="AEC49876.1" FT /translation="MTSESEWEQKFLAWKNSHTGIEADQSLITSSKPSNSDLNHNIRIT FT CYRSDLGYKVLLTSQEKAKAHRSELFSLTREHNLAHQRSLKKIGEKAEEALKISRAQRS FT EIQGLKAQLDVISEELKALRRDYLERRPLNKKDVEQLVLQIIEQPKFIEKQTEALLEEV FT SKLVISVKKEVGQVQHMLDLMRG" FT CDS 1059..1394 FT /codon_start=1 FT /product="virion associated protein" FT /note="ORF II protein" FT /db_xref="UniProtKB/TrEMBL:F5AY20" FT /protein_id="AEC49878.1" FT /translation="MSVSNTEYTEALKKTKTLFGDQSTGFVTENPSQTTTAKQLNTIIQ FT LLIQVHTKLGVLEDQLSKVKAKVDSPPSSSGKDYLADLEDITKKLSELKVKKAEPSKGT FT LKILKKF" FT CDS 1395..6908 FT /codon_start=1 FT /product="polyprotein" FT /note="encodes movement protein, coat protein, aspartic FT protease, reverse transcriptase and RNase H; ORF III" FT /db_xref="GOA:F5AY21" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001995" FT /db_xref="InterPro:IPR010666" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:F5AY21" FT /protein_id="AEC49877.1" FT /translation="MAFQGTRRRLGTGSTTVLEDNSVLADQIRDYSRGQRIKHEMQNIV FT ARPTALFKRITGGSASEKTLEMILDPEAELEKSMKRRAKAFPAEVVYAPRYDNKLHKVF FT QGRSSQDIMVVDDNQLDMTFIKEETFEQLERAGLRYIHIGALQVRIQPLHQKWYGTMAF FT LAFQDTRSQPAKVIAAMEIDLSKGAQMVYITPDFMTTIGDFYQGIQLSIKTKGYINWRG FT EANLHLERMITARLSSTSNTGFEIKIDKVVQYMKTNGIQAIEAQKESIKKYQGAEWNIK FT PIKVEVTMKPKSMIVQDEYDNSKSFKFGNYQATSNTPAPEYNSEDEIIQEEVRMALCDS FT DSDSETDDPQSAIYQIEQYLATLSPQEEGGDCVSAARSRNTECAEQDEEEAIINAFLKL FT TAEEEVLRIEDEEDCEYPAIKRLEELLKQETVQMSEASSAIIPAEVDMEGNLPGYAPAT FT TATGWSDYNPKINRIGGTSSKWNNQTNYWNLPNANAVNGSMLILCYGKNSEIFERWESS FT TLNYMAAQNISGGEEKISRIENLLGESEKRTFIGWRTAFPTDFEALKNQAIGTNGTQNV FT ISQVRRILLGDSPKQGTTATQDAAYKKIKSLVCTELSYPAIMRYMVGYFHLASKSGRMW FT TSNELSDEFFTKLPDEIADSAKTAFNKKFPGTAIHIPARIEFTYNYLEEICTENNKQRK FT LGKLNFCKGFPVVNPMTRKYKSLGTRRTTTYKGKPHKTHARIDKKKYLQGRKKDCRCYV FT CGEEGHFAKECRSKKRIQERVNIVQELDIPDGYDIISVGYDEKSIEDIYSISEGEDNQA FT HLGRDEEQLPEVPTTWEDWDSYYKKEFLMMAEVLEVSSDEEKEEGPWLVGKEGGYMQQM FT YVTKKQFHCTHDWYYDQPRVRICQRCFQKSPKGQYIICGICKVKVCHQCTEYCYGITMK FT GKEVQPEEDYKELAKSLLAENKKLKLERKLLLEELNNQILENTKIKRELPVIEETSSEA FT AIEIDTLQEALERANELNKEKDAMILKLTEKLKGLEEASTSVLMAQEGQETVMLTARKD FT PMYRFDVHVEVDGIKTKLKALLDTGATKSCINAKFIDERFLTEAKFMVNINGVNSSTKV FT TKQLKEAKLWVKDTFFTLPITYVGNLDLGRNTQMIIGCNFIQSLRGAVRLEGRSVTFYK FT LISTVEADEYIQKIEEQVLIVQEPAPYIDRPFMTKNRKLMEEMKELGYIGDEPLKHWNN FT NKIKCHIRIKNPELTIQDKPQKMVTPQIKEQMKKHMDELLLRRVIRPSTSRHRTNAFIV FT NSGTSIDPITMKEVKGKPRLVFNYKRLNDNTEKDQYSLPGINALLKSVGNAKIYSKFDL FT KSGFHQVAMEEESIEWTAFWAITGLYEWLVMPFGLKNAPAIFQRKMDLCFQGTESFIAV FT YIDDILIFSQNEEEHAEHLYKMMEICKKNGLILSPTKMKIGVKVVDFLGSTVGENHLDL FT QPHIVQKIVDFDEEKLKTKKGLKSWLAILNYARGHIKNMGKILGPLYPKTSEKGEKRLN FT SEDWKIIRKMKEEVRRLPKMAIPPEDAYIVIETDGSMNGWGGVCYWKKSKADPRSTEQV FT CRYASGKFNKPKSTIEAEIFGVLNSLEKFRLYYIDKAEITVRTDSSAIEKFYNKSTEHK FT PSEIRWIKFMDFISGAGPEIKFEHIKGKDNTLADLLSRLNRALKAEATIELVTLAQALK FT EIDYDQDHIAFEKIKRYAENIKWPSYEKIEICCMTETNELAPKCNCGQPAVLKISQTSK FT NPGRRFWTCEQRKCHAWWWDDHLEDYIHARIKMKLEDIQKEQNPYDFEDWDDLLKETQE FT EYKLEDALDLDDFMNDDQWRRA" XX SQ Sequence 7458 BP; 2744 A; 1360 C; 1656 G; 1698 T; 0 other; tggtatcaga gcaaggttag ttcttatggc ttttatgggg taaaattttt agataggggc 60 caagaggctc tgcaatgctt gttataaaca actacctgtg caaatgttat gatttaataa 120 gtcgaatagc ctgaacacta caaggaacta gggaaaccag gatacttcca atcatcctga 180 cttgttcaag gagagaaaac tcgcccaaaa accaaaaggc ttaaagacca aagtacccgt 240 caggcaagag gccattaagg ggaagcggtt gcggctgagg ttatttgggg tatgacatat 300 atctccttat gacaaatctt taagatacag gaagaagcct ggtagtacct ttttctaaat 360 agaactttaa ggctagtaag acgtaagaat ctaagacatc actagaactg ggtagaagtt 420 tggaaacaag tattgaatcc tcaaaggtac ccctatctgt tttaattctg aaaagccagg 480 aactagattt tcgctctgtt tatgacctct gaatctgagt gggaacagaa atttctcgct 540 tggaaaaatt ctcatactgg tattgaagct gaccaatcat tgataaccag ctccaaaccc 600 agtaattcag acctaaatca caatattcgt attacatgct atagatcaga tcttggatac 660 aaagtgttac taacctcgca ggaaaaggca aaggcacaca gaagtgagtt gttctctcta 720 acaagagagc acaatctcgc tcatcaacga agcctaaaga agatcggtga aaaggctgaa 780 gaggcattaa aaatatctcg ggcccagcgc tctgagattc aaggacttaa ggctcaactg 840 gacgtcatct ctgaagagct taaagctctc aggagagact atctggagcg aagacctctt 900 aacaagaagg acgtagaaca gctggttcta caaataattg agcagccaaa gtttattgaa 960 aaacaaacag aagctctgct agaagaagta tctaaactag taatatctgt caagaaagaa 1020 gttggacaag tgcagcatat gcttgacctc atgagaggat gagtgtatcc aacactgagt 1080 atactgaggc actcaagaaa actaaaaccc tgtttggtga tcaaagtact gggtttgtca 1140 cagaaaaccc atctcagact actacagcca agcagctcaa caccattatc cagttgctaa 1200 tacaagtcca tacaaagctt ggtgtattag aagatcagct gagcaaagtt aaagcaaagg 1260 tagactcccc tccttcatca tcgggaaaag actacctagc agaccttgaa gacatcacca 1320 agaagctttc agagttaaaa gtgaaaaagg cggaaccaag taaaggaact ctcaaaatcc 1380 tcaagaaatt ttaaatggcc ttccaaggaa caagaagacg tctggggact ggatccacta 1440 cagtcctgga agacaactca gttcttgctg atcaaattag ggactacagc agaggacaaa 1500 ggattaagca tgagatgcag aacattgtag caaggccaac tgctctcttc aaaagaatca 1560 ctggaggaag cgcctcggaa aagacgcttg aaatgatact tgaccctgaa gctgagctag 1620 aaaaatccat gaaaagaagg gccaaagcat tcccagcaga agtagtatat gcaccaagat 1680 acgacaacaa gctccacaaa gtcttccaag gaagatcaag ccaagatatt atggtagttg 1740 atgacaatca attggatatg acattcatca aagaagaaac ctttgaacag ctggaaaggg 1800 ctggactaag gtacatacac attggagctt tacaagtaag aatacaaccc ttacatcaaa 1860 agtggtatgg aacgatggct ttcttagcat tccaagacac aagaagccag ccggctaaag 1920 taatagccgc aatggaaatt gatcttagca aaggagccca gatggtatat attacaccag 1980 attttatgac cacaattgga gacttctatc aagggatcca attatccatc aagaccaagg 2040 gctatatcaa ctggcgtggt gaagcaaatc ttcacctaga aagaatgata acggctaggc 2100 tgtccagtac atcaaatact ggattcgaaa ttaagattga taaggtggta caatacatga 2160 agaccaatgg aattcaggca atagaagcac aaaaggaatc catcaagaaa taccaaggcg 2220 cggaatggaa tatcaagccc atcaaggtag aagttaccat gaagccaaaa tccatgatag 2280 tgcaagatga gtatgacaac tcaaaatctt tcaaatttgg taattaccaa gccaccagca 2340 ataccccagc cccggaatac aacagcgaag atgaaatcat ccaagaagaa gtcagaatgg 2400 cactctgtga ttctgacagt gatagtgaga ctgatgatcc tcaatcagcc atttaccaga 2460 ttgagcaata tcttgctacc ctttcccccc aggaggaggg aggagattgt gtttctgccg 2520 caaggagtag aaatacagag tgtgctgaac aagatgaaga ggaggcaatc atcaatgcct 2580 tcttgaaact tacagctgag gaagaagtcc taagaattga ggacgaggaa gactgtgagt 2640 accctgcaat caaaagatta gaagaactat tgaagcagga aacagtacaa atgtcagaag 2700 catcatctgc tattattcca gcagaggtgg atatggaggg caatctgcca ggatacgccc 2760 cagcaacaac ggcaacaggt tggtctgatt acaacccaaa aataaacaga ataggaggaa 2820 catccagcaa gtggaataat cagacaaatt actggaacct gcccaatgca aatgcagtca 2880 atggatctat gctaatccta tgctatggaa agaattcaga aatctttgaa agatgggaat 2940 catcaacact gaattatatg gctgcacaaa acatttcagg aggagaagaa aagatcagca 3000 gaattgaaaa tctgctaggt gaatctgaaa agagaacatt cattggatgg cgtacagctt 3060 ttccaacaga ctttgaggca ctaaaaaatc aagcaatagg tactaatggt actcagaatg 3120 tgatctctca ggtaagaaga attctgctag gagacagtcc aaaacaaggg acaacagcaa 3180 cccaggatgc tgcatacaag aagataaaat cattggtatg cacagaatta tcctacccag 3240 caattatgag atatatggtg ggatattttc atttagcatc caagtcagga agaatgtgga 3300 catcaaatga attatcagat gaattcttca ccaagctgcc agatgaaata gctgattcag 3360 ccaaaacagc ctttaacaag aagttcccag gtacggcaat acatatccca gctagaatag 3420 aatttacata caattatctg gaagaaatct gcacagaaaa taacaagcag agaaaacttg 3480 ggaaattaaa tttctgcaaa ggattcccag tggtcaatcc aatgaccagg aaatacaaat 3540 ctttgggaac aagaagaaca accacttaca agggaaaacc acacaagacg catgcaagaa 3600 tagataagaa gaaatatctg caaggaagaa agaaggattg cagatgttat gtgtgtggag 3660 aggagggcca ctttgcaaaa gaatgcaggt ccaagaaaag gattcaggaa agagtaaata 3720 ttgtccaaga acttgatata ccagatggtt atgacattat atccgtagga tatgatgaaa 3780 aatccattga agatatatat agtatatctg aaggagaaga taaccaagca caccttggac 3840 gagatgaaga acaattgcca gaagtaccaa caacatggga agattgggat agctattaca 3900 agaaggaatt tttaatgatg gcggaagtct tggaagtctc ctctgatgag gaaaaggagg 3960 aaggaccatg gttggtaggc aaagaaggag gttacatgca acaaatgtat gtaacaaaga 4020 agcagtttca ttgcacccat gactggtatt atgaccagcc tagggtaagg atatgccaaa 4080 ggtgttttca gaagagtccg aagggacaat atattatttg tggcatatgc aaggtcaagg 4140 tatgccatca atgcacagaa tactgctatg ggataaccat gaagggaaag gaagttcaac 4200 cagaagaaga ctacaaggag cttgcaaaat ccttgttagc agaaaataag aagttgaaac 4260 tggaaaggaa gttattactg gaagaattaa ataatcaaat tctggagaat acaaagatca 4320 aaagagagtt gccagttata gaagaaacaa gctcagaagc agcaattgaa attgatacgc 4380 ttcaagaagc cctggaaaga gctaatgagc taaataaaga aaaggatgcc atgatactaa 4440 agttaactga aaaattaaaa gggttagagg aagcatccac ttcggtttta atggcacaag 4500 agggtcaaga aacagtaatg ctcacagcaa ggaaggaccc aatgtacaga tttgatgtac 4560 acgtagaagt agatgggatc aaaaccaagt tgaaagcact actggataca ggagccacca 4620 agtcctgtat aaatgcaaag tttattgatg aaagattctt gactgaagca aagttcatgg 4680 taaacatcaa cggggtcaat tcatcaacaa aggtgaccaa gcagctaaag gaggcaaaac 4740 tatgggtaaa agatacattc tttacactac caattacata tgtgggaaat ctggatctag 4800 gcagaaatac tcaaatgatt attggctgca acttcataca atcactcaga ggagcggtaa 4860 ggttggaagg gaggtcagta accttctaca aattgatatc aacagtagaa gcagatgagt 4920 atatccaaaa gatagaggaa caagtactca ttgtacaaga accagcaccc tacattgaca 4980 gacccttcat gacaaagaat aggaagttaa tggaggaaat gaaggaattg ggttatatcg 5040 gggatgaacc attaaagcat tggaacaaca ataagatcaa atgccatatc agaatcaaga 5100 atcctgagct cactattcag gacaaacctc agaagatggt aacacctcag atcaaggagc 5160 aaatgaagaa gcatatggat gaattattac taagaagagt aatcaggcct tcaacaagcc 5220 gtcacagaac caatgcattc atagttaatt ctggaacatc catagaccca atcactatga 5280 aggaagtcaa aggaaagcca agactggtat tcaactataa gaggctgaat gacaacactg 5340 aaaaagatca atattctcta ccaggaatca acgccttgct aaaatcagta ggtaatgcaa 5400 aaatttattc aaaatttgat ctaaagagtg gctttcacca ggtagctatg gaagaagagt 5460 ccatagaatg gacagcattt tgggctatca caggactcta tgaatggcta gtcatgccat 5520 ttggattaaa aaatgcacct gcaatattcc agagaaaaat ggacctatgc tttcaaggta 5580 cggaaagttt cattgcagta tatattgatg atatcttgat tttctcacag aatgaagaag 5640 agcatgcaga gcatttgtat aaaatgatgg aaatctgtaa gaagaacgga ttaattctca 5700 gcccaacaaa gatgaagatc ggagttaagg tagtagattt tctaggaagc actgttggtg 5760 aaaatcacct ggatttacaa ccacatattg tgcaaaagat agtggatttt gatgaagaaa 5820 aactgaagac aaagaaaggt ctcaaatcct ggctggcaat tctcaattat gccaggggac 5880 acatcaaaaa catgggaaaa atcctaggtc cactataccc caaaacttcg gaaaaagggg 5940 agaaaagatt gaattctgaa gactggaaaa taatcagaaa gatgaaggaa gaagtcagaa 6000 ggttgcccaa aatggcaata cccccagagg atgcatacat agtcatagaa acggatggct 6060 ctatgaatgg atggggagga gtgtgttatt ggaagaaaag caaagctgat ccaagaagta 6120 cagagcaagt ttgccgctat gcaagtggta aattcaacaa accaaaatca actattgagg 6180 cagaaatttt tggagtgctt aacagtttgg aaaaattcag gctgtactac attgataagg 6240 ctgaaatcac agtaagaact gacagcagtg cgattgaaaa attttataat aaaagcactg 6300 agcacaagcc ttcagaaatc agatggatca agttcatgga ctttatatct ggtgcaggac 6360 cagaaatcaa gtttgagcat attaagggca aggacaatac attggctgat ttattatcaa 6420 gactcaacag ggctcttaag gcggaggcta ccatagaatt agtaaccctt gctcaagcct 6480 taaaggaaat tgattatgat caagaccaca ttgcctttga gaagattaaa aggtatgctg 6540 aaaacataaa gtggccttct tatgaaaaaa ttgaaatctg ttgtatgaca gaaacaaatg 6600 agctggcacc aaaatgtaat tgcggacaac ctgcagttct gaagatctca caaacttcaa 6660 aaaacccagg aaggagattt tggacatgtg agcaacgaaa atgtcatgca tggtggtggg 6720 atgaccacct tgaggactat attcatgcaa ggataaaaat gaagttagaa gatatacaaa 6780 aggaacaaaa tccttatgac tttgaagatt gggatgatct cctgaaggaa acccaggaag 6840 aatacaaact ggaagacgca ctagatcttg atgacttcat gaatgatgat cagtggcgaa 6900 gagcgtaagc aatgacgaaa gacaggtgaa gaacgtcagg gaagacgtca gagcgcacca 6960 tgggatggca ctaacccatg tgacttgctt tatgagatgc ctccactaac cggaagatag 7020 tggatagtag taggtgtctg cagatctacg aatctgcttt atgtcggcag atctgcgaat 7080 ctgctttata tatatgtgtc tgcagatctg cgaatctgct ttataaaaag aggcctgcgt 7140 gccctctaaa gcaacggtag tgatgctgta tcaccaacca ctgctttgta tctttagtcc 7200 agagcatctt gtgcttcgag aacattattg gcgatgatgg ggcccaatgc gcacccggcc 7260 ataatgctca ggcaagccaa gtcctctata taaggacaca atgtaggctc ttacaggcat 7320 cgagcaccac ccactcttat gcctatttga gcttcaggct tgaataaaag aattttcgac 7380 aatctctgat gttctcaagt ttctaagtag ttgcaatcga gacgaacgaa gcttgaggag 7440 cgaacgatcc gcggtgac 7458 //