ID HQ593107; SV 1; circular; genomic DNA; STD; VRL; 7519 BP. XX AC HQ593107; XX DT 04-MAY-2011 (Rel. 108, Created) DT 04-MAY-2011 (Rel. 108, Last updated, Version 1) XX DE Banana streak UA virus, complete genome. XX KW . XX OS Banana streak UA virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7519 RA James A.P., Geijskes R.J., Dale J.L., Harding R.M.; RT "Molecular characterisation of six badnavirus species associated with leaf RT streak disease of banana in East Africa"; RL Ann. Appl. Biol. 158(3):346-353(2011). XX RN [2] RP 1-7519 RA James A.P., Geijskes R.J., Dale J.L., Harding R.M.; RT ; RL Submitted (07-NOV-2010) to the INSDC. RL Centre for Tropical Crops and Biocommodities, Queensland University of RL Technology, 2 George St, Brisbane, Queensland 4001, Australia XX DR MD5; 0afa4ffc98345fae97653044494a6b97. XX FH Key Location/Qualifiers FH FT source 1..7519 FT /organism="Banana streak UA virus" FT /host="Musa sp. cv. Likhako" FT /mol_type="genomic DNA" FT /country="Kenya" FT /collection_date="Feb-2009" FT /db_xref="taxon:1016854" FT CDS 483..1016 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF I protein" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:F5AY16" FT /protein_id="AEC49875.1" FT /translation="MTSLAEFERQFTQWKSFWDSRKDLDYLNIDSTSKSDFAHNLRVAS FT YRIDLGNKALFALCKQNCFHSLDIRKDLEKQDLKLGELERLSKVVRSQRTDLKAAHEKL FT DVLKEELAALRKDYLKRRPLNKEDVEQLVLQITEQPKFIEKQTEALLEDVSKLVISVKR FT EVSQVQEMLNLMRG" FT CDS 1013..1402 FT /codon_start=1 FT /product="virion associated protein" FT /note="ORF II protein" FT /db_xref="UniProtKB/TrEMBL:F5AY17" FT /protein_id="AEC49873.1" FT /translation="MTSSNSQYQQALTNTKTTFGSDSVGFVTENPSQTSTAKQLNTTIQ FT LLIQLHEALTQVKIQVKDIQDRVRAIEGRSGESSAGTPAIKSDIEAINQKLQKIQNIQA FT TRPKSEQGTSKVKVFQDPYNLLRRL" FT CDS 1402..7038 FT /codon_start=1 FT /product="polyprotein" FT /note="encodes movement protein, coat protein, aspartic FT protease, reverse transcriptase and RNase H; ORF III" FT /db_xref="GOA:F5AY18" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001995" FT /db_xref="InterPro:IPR002156" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:F5AY18" FT /protein_id="AEC49874.1" FT /translation="MASRPRVSGTGSRTATIAEPGVPLIEDQIREYRNSHRAAYEAQRL FT TRQAGNIVGRIVGRQPREHTLSMVVNPDSELSRSLAHRARTVPAEVLYMTQRDSPVNRV FT YRNRTEERMLVTNGQQDRTFIYPESFEELVNAGFEYIHLGVLQVRLQIMHRTYAGTIAL FT VVFRDTRWTQEGEEDRSIIAAMEADLSQGHQLIYVIPDIMMTIRDFYQHVQISVLTKGY FT NGFQGEANLLITRSCRCRLTNVPNVGFAYNIQKVVEYLNSKGVKAIQAPKLDTKKFRGT FT DWNIKPSEVVVPMEPTRMITRVNYDSSRTLKFTDYQASTSTAPPKYNEDGDTDDEAEVH FT HVNMLFFEAEDDYPSLAALEKIFSPEGMVGEEETINTFLQNLNLDTEDTRSHISEKVHH FT IEDYPSLAKVEQVLSTGESAISSYRPPEVEMGGVAPGYAPASGTSGWAGTSSQLFPFPR FT RPKKWDDSSEWFALPPAQSRQGAMFVMPYDFDVKVFERWESITLLYLSERSFDTADDKL FT RTVENLLGENEKKMFIAWRMKYTNEYETMKAQALGDNGSQNILNQLRLIFFLENPQVGT FT TDSQDAAYKTLKSLVCTEMTDTAIYRYMNDYFHLAAKSGRAWANEELSQEFFTKLPRGL FT GDRIEKAFKEKHPSNTIGVAARITFTKNYMKEICQEAVFQNQLKKLGFCRNTPVHGLYG FT KDKPYKKYGARKSQNYHGKPHKSHVRIAKRKHLAMRKKDCKCFACGETGHFASECKNPR FT KLVERVAIMDSLELPEDVDVISVGMDEDDISEIYSVGEEIDEYQFQQEEFEDFTNYEVY FT MIHVEEIPREFLVGEPSDWRSKMKVSINQYYCIHNWKFDQESMARCNACHHEALKGSRM FT DCLKCDLTICILCRPHYYPKIEIPVEKIKTRETRSVDWKKIVLEQHEALLSISAREKSL FT RKELEQALEQLKHYKRESEIIIEEEPVELMEELENTKRENELLNALLEREKTEREELAI FT RASEEKEALKTEIRELRQENEALKTGRPIIEDVNALEECIVSTLGPRNNLLNMKVSFEV FT EERRIMLNAILDTGATVSVCSEEIVPQEFRTNAAVKALIKGVNGTTAVTEVLKEGKLWV FT GNQYFRMPRTFVMPKLSEGLHLIIGLNFIHAMEGGVRIEKGEVTFYKIVTTTPTSPIVH FT DINYIEELELEIPEYYDICSTVGAIQGGISEEFISPEFIQKMKKLGYIGEEPLKHWEKN FT QVRCRIEVKNPDLIIEDRPLKHVTPKMKEAMAVHIKKLLELKVIRPSTSKHRTTAMIVE FT SGTEVDPVTGIEKRGKERLVFNYKRLNDNTEKDQYSLPGINTIIQRIGNAKIYSKFDLK FT SGFHQVAMDPESIPWTAFWAIDGLYEWLVMPFGLKNAPAIFQRKMDHCFHEDFIAVYID FT DILVFSETVQQHRQHLKVFFDICEKNGLVLSPTKMKIGTRQIDFLGATIGDSRIKLQPH FT IIKKIADIKDEELKEVRGLRKWLGILNYARNYIPNLGKTLGPLYSKTSPNGERRMNSQD FT WAIVRKIKEQVLNLPDMELPPKEAVMIIETDGCMEGWGGVCKWKKNISQPRLEERVCAY FT ASGKFTPIKSTIDAEVQAVINSLEKFKIYYLDKKELIIRTDSQAIVTFYKKISDHKPSR FT VRWLAFVDYITGTGLNIRFEHIDGKDNILADTLSRLVQIIIHKEAHPAMSILIDAAEEV FT VRKYNPHSAARLGRMIEAVKDWQDNQMHPKVFMYRYIKEPKFKCGCGRKAEEVVSHTQK FT NPDRKFYRCKRSNCHTWVWKDQIDNYVQNYINWLKESEEPEDEGYDPINRPRSLDSSPW FT SFDEPGSSQHQKEEEDERLLCKETMGEDYNESEQEVIRNNQATAIEDALDLLDVSNDDQ FT WGRS" XX SQ Sequence 7519 BP; 2667 A; 1413 C; 1717 G; 1722 T; 0 other; tggtatcaga gcaaggttag ttcttaatgg ctttcatggg gtaatcccct aggataggag 60 cctgagggct ctgctatgct tcaatttggg aaaataattg tgcaagtaga ttcgctgata 120 agtcgaaagg ttaaattact atttatgcct gaaagtagaa ttatcacatg aaaaatgatt 180 tagctaatat ctcatttggg ggcaaaagtc gtgtggcact acatctggca aggcagaagg 240 ccgtaagacc agtgaaaccc actcgtgagc cttaatagca tgagtaaaag gctaaagcaa 300 cgtgaagtag tgcgatgatc tcaaggataa ggcatagatt ggtacttata tacctgtaag 360 acgtaaggct aagtctacct ctggaactga ttatgatcgc caacagaagt attagcaccc 420 cttaaggtac tcctattcat ttaagacata aaatctccat ccaaaacctt ttgctcttgt 480 ttatgaccag tttggccgaa tttgaaagac aattcacaca gtggaaatct ttttgggata 540 gccgaaaaga tctagattac ttaaatattg attctacttc taagtcggat tttgctcata 600 acctccgggt cgcatcctat cggattgacc ttggaaacaa agccttattt gccttgtgta 660 aacagaactg ctttcatagc ttggatattc gcaaggacct tgaaaagcaa gacctcaagt 720 tgggagaact tgagagactt tcaaaagttg ttcgttctca acgaacagac ctgaaggccg 780 cccacgagaa gttggacgtt ctaaaggaag agctagcagc tctccggaag gactatctga 840 agcgaaggcc actaaacaaa gaagacgttg aacaactagt gctgcaaatc actgagcagc 900 ccaaattcat cgagaaacaa acagaagcac tcctagaaga cgtctcgaag ctggttatct 960 ctgtcaaaag agaagtgagt caagttcaag aaatgctgaa cttgatgagg ggatgacatc 1020 atccaactcc cagtatcaac aagctctaac caacaccaag actacctttg gcagtgattc 1080 ggttgggttt gttactgaaa acccctctca aacctccacc gctaaacagc tgaacaccac 1140 aatccagctc ttgattcaac tccacgaagc tctaactcaa gtaaagattc aagtcaaaga 1200 catccaagat agagtaagag ccattgaagg aaggtccggg gaatcatcag ccggaacccc 1260 cgcgatcaag tctgatatag aggccatcaa tcaaaagttg caaaagatac aaaatattca 1320 agcaacaaga cctaaatctg agcaagggac aagcaaggtc aaggtattcc aagacccata 1380 caacttactc agaagattat aatggcatca agaccaaggg tttcgggtac aggttctcga 1440 acagctacca tagctgaacc tggagtccct ctgatagaag accagatcag agagtacaga 1500 aactctcaca gagctgcata tgaggcccag cgactcacca gacaagctgg caatatagtt 1560 ggaagaattg ttggaagaca acctagggaa catactctct ccatggttgt aaatcctgac 1620 tcagagctta gcagaagcct ggcacatcga gctagaacag taccagcaga agtactgtac 1680 atgactcaaa gggacagtcc tgtcaacaga gtatacagaa acaggacaga agaaaggatg 1740 ctagtaacaa atggtcagca ggatagaaca tttatatatc ctgaatcatt tgaagaacta 1800 gtaaatgctg gattcgagta catccacctt ggcgtactac aagtaaggct gcaaattatg 1860 cacagaacct atgcagggac aatagccctc gtagtattca gggatacaag atggacacaa 1920 gaaggagagg aagacaggtc catcatagca gcaatggaag ctgatctttc acaaggacat 1980 cagcttatat atgtaatccc agacataatg atgaccataa gggatttcta ccagcatgta 2040 cagatcagtg tccttacaaa aggatacaat ggatttcaag gggaggcaaa tctcctgatc 2100 actagaagtt gcagatgcag gctcaccaac gtacctaatg ttgggtttgc ctataacatt 2160 cagaaggttg tggagtacct caactccaaa ggtgtgaagg ctattcaggc accaaaatta 2220 gacacaaaga aattcagagg cacagattgg aacatcaagc catctgaagt ggtagtacca 2280 atggagccaa ccaggatgat tacaagggta aactatgata gctccagaac attgaagttt 2340 actgactacc aagcctccac aagcacggct cccccaaaat ataatgaaga tggtgacact 2400 gatgatgaag cggaagttca ccacgtcaac atgctattct ttgaagctga agacgactat 2460 cctagtctcg cagctttgga gaaaatcttt tccccagaag gcatggtggg agaagaagaa 2520 accatcaaca catttttaca aaatctgaat cttgatacgg aagacaccag gagccatatc 2580 agtgaaaagg tacatcatat tgaagattac ccatctttgg ctaaagttga acaggttcta 2640 agcactggag aatcagccat cagtagctat aggcccccag aagttgaaat gggcggtgta 2700 gcacctggct acgcaccagc atcagggaca tcaggatggg ctggtacatc atcacaactg 2760 ttcccattcc caagaagacc caagaagtgg gatgacagtt cagagtggtt tgccttacca 2820 ccagcacaat caaggcaagg ggcaatgttt gtcatgccct atgattttga tgtcaaagta 2880 tttgagaggt gggaaagtat cactctctta tacttatcag aaagaagctt cgacacagca 2940 gatgacaaat taagaacagt ggaaaatctg cttggtgaaa atgagaagaa gatgttcata 3000 gcctggagga tgaagtatac caacgagtat gaaactatga aggctcaggc actgggagac 3060 aatggttccc agaatatcct aaatcaatta agattgatat tcttcctgga aaatcctcaa 3120 gtcggaacaa cggattcaca agatgctgca tacaaaacat tgaagagcct agtctgtaca 3180 gaaatgacgg atacggctat atacagatac atgaatgact atttccatct agcagcaaaa 3240 tcaggaagag catgggcaaa tgaagaatta tcccaagaat tcttcacaaa gcttccaaga 3300 ggacttggtg atagaatcga aaaggcattc aaagaaaagc accctagtaa cacaattggg 3360 gttgcagcaa gaattacatt caccaagaat tatatgaagg aaatttgcca agaagcagta 3420 ttccagaatc agctcaaaaa attgggattc tgcaggaaca caccggtaca tgggctatat 3480 ggcaaagaca agccatataa gaagtatggg gccagaaaat ctcaaaacta tcatgggaag 3540 cctcataagt ctcatgtcag gatagccaaa agaaaacatc tggctatgag aaaaaaggac 3600 tgcaagtgct tcgcatgtgg ggaaacaggg cactttgcaa gtgagtgtaa gaaccccaga 3660 aaattggtgg aaagggtagc aataatggat tctcttgagt taccagaaga cgtagatgtc 3720 atatcagtag gaatggatga agatgatatt tcagaaatct attcagtcgg ggaagaaatt 3780 gatgaatatc agttccagca agaggaattt gaggacttca caaactatga agtctacatg 3840 attcatgtgg aagaaattcc cagggagttc cttgttggag aaccatctga ctggagatca 3900 aaaatgaagg ttagcattaa tcagtattac tgcatacata actggaaatt tgaccaggaa 3960 agcatggcaa gatgcaatgc ctgtcatcat gaggcattaa agggctcaag gatggattgt 4020 ctgaagtgtg accttaccat atgcatatta tgcaggccac actactatcc aaagatagaa 4080 atcccagttg aaaagatcaa aacaagggaa acaagatcag tagactggaa aaaaattgta 4140 ctagagcaac atgaagctct actaagcata agtgcaaggg aaaaatcttt gaggaaagaa 4200 ttagaacaag ccctggaaca gttgaaacat tacaaacggg agagtgaaat aattatagaa 4260 gaggaaccag tagaattgat ggaagagctt gaaaatacca aaagagaaaa tgagttacta 4320 aatgccctgt tggagagaga gaaaacagaa agggaagagt tggccataag agcgtcagaa 4380 gaaaaggaag cgctcaaaac agaaatcagg gagttaagac aagaaaatga agctctcaag 4440 acaggaagac caataataga agacgttaat gcattagaag aatgcatagt tagcactttg 4500 gggccaagaa ataatctact caatatgaag gtatccttcg aagtggaaga aagaagaatc 4560 atgcttaacg caattcttga tacaggagca acagtaagtg tatgctcaga agaaattgtt 4620 cctcaggagt tcagaacaaa tgcagcagta aaggcactca taaaaggagt aaacggtaca 4680 acagcagtga cagaggtact gaaagaagga aaactttggg taggcaatca atatttcaga 4740 atgccaagga catttgtgat gcccaagtta tctgaaggac tccatcttat tattggatta 4800 aatttcatac atgctatgga aggaggagtc aggattgaga agggggaagt gacattttac 4860 aagattgtca cgacaacacc aacatctccg atagtgcatg acatcaacta tattgaagaa 4920 ttggagttgg aaatcccaga atactatgat atatgctcaa cagtgggagc aattcaagga 4980 ggaatatcag aagaattcat ttctccggaa ttcattcaga agatgaaaaa attgggatat 5040 attggtgaag aacccttgaa acattgggag aaaaatcaag tcaggtgcag gatcgaggta 5100 aaaaatccag acttaatcat tgaagatagg cctctaaagc acgtcactcc caagatgaaa 5160 gaagcaatgg ctgtacacat caagaaactg ttagaattga aggtaataag accatcaaca 5220 agcaagcata ggactacagc catgattgtg gaatctggta ctgaagtgga tccagttacc 5280 gggattgaaa agagaggcaa ggaaagattg gtcttcaact ataaaagatt gaatgacaac 5340 actgaaaaag atcagtatag cctccctggg atcaacacta ttattcagag aattggcaat 5400 gcaaaaatct acagcaagtt tgatttgaag agtggattcc accaagttgc tatggaccct 5460 gagtcaatcc catggacagc attttgggcc atagatggtt tatatgaatg gcttgtgatg 5520 ccatttggtt tgaagaatgc cccagcaatc tttcagagga aaatggacca ctgtttccat 5580 gaagacttca tagcagtata tattgatgat atcttggtct tctcagaaac cgtccagcag 5640 cacagacaac atctgaaggt attctttgat atttgtgaaa aaaatgggtt ggtattaagt 5700 ccaacaaaga tgaagatagg aacaagacaa atagattttc ttggagctac aattggagat 5760 tccagaatca agcttcaacc tcatataatc aaaaaaatag ctgatattaa ggatgaggaa 5820 ctaaaggaag tcagaggatt gaggaaatgg cttggaatcc ttaattatgc cagaaattat 5880 atccctaatc ttggaaaaac cctaggaccc ctgtattcaa agacgagtcc taatggggaa 5940 agaaggatga atagccagga ctgggctata gtcaggaaga ttaaggagca agtccttaac 6000 ttaccagaca tggaactccc tccaaaggaa gcagtcatga taattgaaac agatggttgc 6060 atggaaggat ggggaggagt ttgcaaatgg aagaaaaaca tctcacagcc aaggctagaa 6120 gaaagagtat gtgcctatgc aagtggaaag ttcacaccaa tcaagagcac aattgatgca 6180 gaagttcaag cagtcatcaa tagcttggaa aaatttaaga tatattatct ggataagaag 6240 gaattgatca tcagaacaga tagtcaggca attgtgacat tttacaaaaa gatctctgat 6300 cacaaaccat caagggtaag atggctagca tttgtggatt acatcacagg aactggtctt 6360 aatatcaggt ttgaacacat tgatggcaag gataatattc ttgcagatac tctatcaaga 6420 ttggtacaaa ttattatcca caaggaagca catccagcaa tgagtattct tattgatgct 6480 gcagaagaag tcgtcaggaa atacaaccct cactcagcgg caagattagg aaggatgatt 6540 gaagcagtta aagattggca ggacaatcag atgcatccta aagtctttat gtacagatac 6600 attaaagagc cgaagtttaa gtgtggatgt ggaaggaaag cagaagaggt tgtgtcacac 6660 acacaaaaga accctgacag gaaattctat cgctgcaaaa gaagtaattg ccatacttgg 6720 gtatggaagg accaaattga taattatgtg cagaattaca ttaattggct aaaggaatct 6780 gaagaaccag aagatgaagg ctatgatccg attaatagac caagatcatt agattcaagt 6840 ccatggagtt ttgatgaacc aggcagttcg caacatcaaa aggaggaaga agacgagcga 6900 ctactatgca aggaaactat gggagaagac tataatgaat cagaacaaga ggtaatacgc 6960 aacaatcagg ccacagccat agaagatgcg ctggatctac tagacgtaag caatgacgac 7020 caatggggaa gatcgtaagc aatgacgtct tacggaagtg gtggacccat accagctgga 7080 atcgcactcc agactgtgac agggtagtta gtgcgatagg tggatatgcg aatccacttt 7140 atataaaaga acggactacg tgccgtctca gaaaaataat tgtccggcct gcgtgccgaa 7200 agtaatgtct aggtgcgatg ctgcgtcacg cacaatgact aaagtgtgta gctttgcttc 7260 aaggcaaagg tagtccaaga gcattagatg ctccactcag tgcattattg gtgacgatgg 7320 ggcccagaga gcacccggcc atatgcctgt agtgagctcc cagctctata taaggactca 7380 ttgtatcagt tgcaagcatg caagtcacaa cgcaagctta cttctgaaaa gaaataagaa 7440 ccctgtgctt gaaacaactt tgtgtcaaag ttcgagtaaa gcgcaagatc ccgtcttccg 7500 cacatcgcgt atcttcgcc 7519 //