Dbfetch

Dbfetch

ID   HQ543099; SV 1; linear; genomic RNA; STD; VRL; 530 BP.
XX
AC   HQ543099;
XX
DT   13-JUN-2011 (Rel. 109, Created)
DT   28-JAN-2013 (Rel. 115, Last updated, Version 2)
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DE   Turnip yellows virus isolate 39bCP coat protein and movement protein genes,
DE   partial cds.
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KW   .
XX
OS   Turnip yellows virus
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
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RN   [1]
RP   1-530
RA   Dann A.L., Wilson C.R.;
RT   "Molecular survey of Poleroviruses (Luteoviridae) infecting peas (Pisum
RT   sativum L.) and broccoli (Brassica oleracea var. italica) in Tasmania";
RL   Unpublished.
XX
RN   [2]
RP   1-530
RA   Dann A.L., Wilson C.R.;
RT   ;
RL   Submitted (05-NOV-2010) to the INSDC.
RL   Tasmanian Institute of Agricultural Research, University of Tasmania, 13 St
RL   Johns Avenue, New Town, Tasmania 7008, Australia
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DR   MD5; 295ad89cd8867cf633ea935ea8d9fdf8.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..530
FT                   /organism="Turnip yellows virus"
FT                   /host="Brassica oleracea var. italica"
FT                   /isolate="39bCP"
FT                   /mol_type="genomic RNA"
FT                   /country="Australia"
FT                   /collected_by="Susan Lambert"
FT                   /collection_date="21-Apr-2010"
FT                   /db_xref="taxon:131083"
FT   CDS             <1..>530
FT                   /codon_start=2
FT                   /product="coat protein"
FT                   /note="P3"
FT                   /db_xref="GOA:F8S801"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="UniProtKB/TrEMBL:F8S801"
FT                   /protein_id="AEH27593.1"
FT                   /translation="WKKTTTEAARRTQRSQPVVVVQTSRTTQRRPRRRRKGNNRTRGAV
FT                   STKGASSSETFVFSKDNLAGSSSGAITFGPSLSDCPAFSNGILKAYHEYKISMVILEFV
FT                   SEASSQNSGSIAYELDPHCKLNSLSSTINKFGITKPGRRAFTASYIHGTEWHDVAEDQF
FT                   RILYKGHGSSSIA"
FT   CDS             <1..527
FT                   /codon_start=3
FT                   /product="movement protein"
FT                   /note="P4"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:F8S802"
FT                   /protein_id="AEH27594.1"
FT                   /translation="GRRRPRRQHDALSALSQWLWSKPLGQHNADLDDDEKVITGQEELF
FT                   LPKEQAQARHLFSRKTISREVPAEQSRSGRVYQTAQHSLMEYSRPTMSIKSRWSFWSSS
FT                   PKPLPKTPVPSLTSWTHTVNSTPFPQLSTNSGSQSPGGGRLQRLTSTGRNGTTLPRTNS
FT                   GSSTKAMVLHR"
XX
SQ   Sequence 530 BP; 148 A; 148 C; 126 G; 108 T; 0 other;
     atggaagaag acgaccacgg aggcagcacg acgcactcag cgctctcagc cagtggttgt        60
     ggtccaaacc tctcggacaa cacaacgccg acctagacga cgacgaaaag gtaataaccg       120
     gacaagagga gctgtttcta ccaaaggagc aagctcaagc gagacatttg ttttctcgaa       180
     agacaatctc gcgggaagtt ccagcggagc aatcacgttc gggccgagtc tatcagactg       240
     cccagcattc tctaatggaa tactcaaggc ctaccatgag tataaaatct cgatggtcat       300
     tttggagttc gtctccgaag cctcttccca aaactccggt tccatcgctt acgagctgga       360
     cccacactgt aaactcaact ccctttcctc aactatcaac aaattcggga tcacaaagcc       420
     cgggaggagg gcgtttacag cgtcttacat ccacgggacg gaatggcacg acgttgccga       480
     ggaccaattc aggatcctct acaaaggcca tggttcttca tcgatagctg                  530
//