ID   HQ541325; SV 1; linear; genomic RNA; STD; VRL; 2007 BP.
XX
AC   HQ541325;
XX
DT   17-JAN-2011 (Rel. 107, Created)
DT   13-DEC-2011 (Rel. 111, Last updated, Version 3)
XX
DE   Heterobasidion RNA virus 4 isolate HetRV4-pa1 putative RNA-dependent RNA
DE   polymerase gene, complete cds.
XX
KW   .
XX
OS   Heterobasidion partitivirus 4
OC   Viruses; Riboviria; Partitiviridae; unclassified Partitiviridae.
XX
RN   [1]
RP   1-2007
RX   PUBMED; 22115442.
RA   Vainio E.J., Hakanpaa J., Dai Y.C., Hansen E., Korhonen K., Hantula J.;
RT   "Species of Heterobasidion host a diverse pool of partitiviruses with
RT   global distribution and interspecies transmission";
RL   Fungal Biol 115(12):1234-1243(2011).
XX
RN   [2]
RP   1-2007
RA   Vainio E.J.;
RT   ;
RL   Submitted (04-NOV-2010) to the INSDC.
RL   Forest Pathology, Finnish Forest Research Institute, Jokiniemenkuja 1 POB
RL   18, Vantaa 01301, Finland
XX
DR   MD5; 248ef799df52ffb1eb3ec8204c28862b.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2007
FT                   /organism="Heterobasidion partitivirus 4"
FT                   /host="Heterobasidion parviporum"
FT                   /isolate="HetRV4-pa1"
FT                   /mol_type="genomic RNA"
FT                   /country="Finland"
FT                   /isolation_source="Picea abies"
FT                   /collected_by="T. Piri"
FT                   /collection_date="1990"
FT                   /db_xref="taxon:942042"
FT   CDS             78..1940
FT                   /codon_start=1
FT                   /product="putative RNA-dependent RNA polymerase"
FT                   /db_xref="GOA:E7E1F0"
FT                   /db_xref="UniProtKB/TrEMBL:E7E1F0"
FT                   /protein_id="ADV15443.1"
FT                   /translation="MEYLTTQFNRITNHFRANTNLELIGHYHYEPKPPRVNEVAISNHK
FT                   RTLSVSFKQFLTSTEIKLITQDYRRSEMTEDAILADFFANDVEKHDIPFDYHVERGLQA
FT                   MADAFRPPQLCMPAHINDVEHHYPYKWQVNSEAPFSTDKYFLDNRKPYGDFFDKESLSW
FT                   KNYVNPEDMQRRIPVPSEQTLAQVTPPKFGFQKGQVFSWVRRWHHIVKSNFTDLTDLAS
FT                   SSYIKDRFVFPMLLHTKTAIVKQNDPNKMRTIWGCSKAWIIADTMLYWELLAYYKLNPG
FT                   KSPMLWGYETFTGGWLRLNAELHNGLIRSSFLTTDWSRFDKRAYFSLIHRIMAIIRTYL
FT                   DFNNGYLPNELYPDTRSEWSSDKAQRLEFLFLWTLENLFQAPIVLPDGRMYRRRFAGIP
FT                   SGLFITQLLDSWYNYTMLATILSALGFDPKSCIIKVQGDDSIIRLYVLIPPHSHEEFLL
FT                   KMQEIADYYFKSVISTQKSEIGNRLNGREVLSYRNNNGQPYRDEILMLAQFYHTKAKDP
FT                   SPEITMAQAIGFAYAACGNNRRVHDCLEDIYLYYKRKGYTPSPAGLTVTFGDSPDLPNL
FT                   PFNLDSFPKIEDVRAYFLHTSYRNEEQQRRTWPAYFSHPPCERP"
XX
SQ   Sequence 2007 BP; 589 A; 564 C; 345 G; 509 T; 0 other;
     ggatcaataa gaaccgaaat tccaacaata caaagaattt taaactcgtt caattattat        60
     cacctcttaa caaatcgatg gagtacctca ccacccagtt caatcgtatc acgaatcact       120
     ttcgtgccaa cacgaaccta gaactcatcg ggcactacca ctacgaaccg aaaccacctc       180
     gtgtaaacga agttgccatt tccaatcaca aacgcactct tagcgttagc ttcaaacaat       240
     ttctcacctc aactgagatc aagctaatca ctcaagatta tcgccgttca gaaatgaccg       300
     aagacgctat tttagctgat ttcttcgcca acgacgttga aaaacacgac attccgttcg       360
     attatcacgt tgaacgtggc cttcaagcca tggccgacgc attccgccct cctcagttat       420
     gtatgcctgc tcatattaac gacgttgaac accactaccc ttacaaatgg caagtaaact       480
     cagaagcacc attctcaact gacaagtact ttctcgacaa ccgtaaacca tacggagact       540
     ttttcgacaa agagtccctc tcatggaaga attacgtcaa ccccgaagac atgcaacgac       600
     gcatccctgt tccctccgaa caaacgctcg ctcaagtcac acctcctaaa ttcggctttc       660
     aaaaaggcca agttttctcg tgggtccgca gatggcatca tatagtcaag tcaaatttca       720
     cagatctgac cgacttagcc tcttcttcat acatcaagga tagattcgtc ttccctatgc       780
     ttttacacac aaaaaccgct atcgtcaagc aaaacgaccc taacaagatg cgcaccatct       840
     ggggctgttc aaaagcttgg atcatcgcag acacgatgct ttactgggaa ttactcgctt       900
     actacaagct taatcccggc aaatcaccta tgctgtgggg ctacgaaacc ttcactggtg       960
     gctggctccg cttaaacgca gaactgcaca atggtcttat tcgaagttcc tttcttacaa      1020
     cagattggag tcgcttcgac aagcgcgcct attttagtct gattcacaga attatggcta      1080
     tcattcgcac ctaccttgac ttcaacaatg gttatttacc aaacgagctc taccctgaca      1140
     ctcgctccga atggagcagt gacaaagctc aacgtttgga gttcctattc ctatggacac      1200
     tcgaaaatct ctttcaagcg ccaatcgtct taccagacgg acgcatgtat agacgacgtt      1260
     tcgccggaat cccttctggc ctgttcatta cgcaactcct cgactcctgg tacaactaca      1320
     ccatgttagc gaccatcctc tccgctctcg gcttcgaccc caagagctgc atcatcaaag      1380
     tccaaggcga tgactcaatc atccgtcttt atgttttgat acctcctcat tctcacgaag      1440
     aatttttgct taaaatgcaa gaaatcgctg attattactt caaatccgtg atctcgaccc      1500
     aaaagtccga gatcgggaac cgccttaacg ggcgtgaagt cctgagttat cggaataaca      1560
     acggccaacc ataccgtgac gaaatcctga tgcttgccca gttttaccac accaaggcaa      1620
     aggatcctag cccagaaatc acaatggccc aagccattgg attcgcttac gcagcatgcg      1680
     gcaacaaccg ccgtgttcac gactgcttag aagatattta tctttactat aagcgaaaag      1740
     gctacacccc cagtcctgct ggtctcactg tcacatttgg tgactcacct gatctgccga      1800
     accttccgtt caatctcgac tccttcccta aaattgaaga tgtccgagcg tatttcttac      1860
     atacgtcata tcgcaatgaa gagcaacagc gccgtacctg gcctgcttac ttttctcatc      1920
     ctccttgcga acgaccttaa gtttgagata ttcttttaat ttattaaaaa aaaaaacaaa      1980
     aaaaaaacaa agaaaaaaaa taaaccc                                          2007
//