ID   HQ541323; SV 1; linear; genomic RNA; STD; VRL; 2027 BP.
XX
AC   HQ541323;
XX
DT   17-JAN-2011 (Rel. 107, Created)
DT   13-DEC-2011 (Rel. 111, Last updated, Version 3)
XX
DE   Heterobasidion RNA virus 1 isolate HetRV1-ab1 putative RNA-dependent RNA
DE   polymerase gene, complete cds.
XX
KW   .
XX
OS   Heterobasidion partitivirus 1
OC   Viruses; Riboviria; Partitiviridae; Alphapartitivirus.
XX
RN   [1]
RP   1-2027
RX   PUBMED; 22115442.
RA   Vainio E.J., Hakanpaa J., Dai Y.C., Hansen E., Korhonen K., Hantula J.;
RT   "Species of Heterobasidion host a diverse pool of partitiviruses with
RT   global distribution and interspecies transmission";
RL   Fungal Biol 115(12):1234-1243(2011).
XX
RN   [2]
RP   1-2027
RA   Vainio E.J.;
RT   ;
RL   Submitted (04-NOV-2010) to the INSDC.
RL   Forest Pathology, Finnish Forest Research Institute, Jokiniemenkuja 1 POB
RL   18, Vantaa 01301, Finland
XX
DR   MD5; a53e5471238d00d10cd2102a495f98d1.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2027
FT                   /organism="Heterobasidion partitivirus 1"
FT                   /host="Heterobasidion abietinum"
FT                   /isolate="HetRV1-ab1"
FT                   /mol_type="genomic RNA"
FT                   /country="Greece"
FT                   /isolation_source="Abies cephalonica"
FT                   /collected_by="P. Tsopelas"
FT                   /collection_date="1993"
FT                   /db_xref="taxon:942041"
FT   CDS             98..1963
FT                   /codon_start=1
FT                   /product="putative RNA-dependent RNA polymerase"
FT                   /db_xref="GOA:E7E1E8"
FT                   /db_xref="UniProtKB/TrEMBL:E7E1E8"
FT                   /protein_id="ADV15441.1"
FT                   /translation="MDYLTGLFSRVLHISRKVTNFEFAGTYHYQPSIPQVNEVATENHK
FT                   RTLRHSFRTYLTSDEYDKIVNGYKRTNLDPSTITEDFFSGDIEDHPEPTDFKSQLSIEY
FT                   GLQCMIDAFKPPAPARVCHLYDVQWHYPFKWQVNAEAPFSTEKYFLDLRKKFGDFFDPV
FT                   TKLWTKYVNPLDALRRYGHTPPADTLNQVTPPKFGFMKNLIFSFVHSWQHVIKSRFTSN
FT                   AGITHSNFLRQRFLFPMLLHIKTAIVSFDAPNKLRSIWGVSKLWIISEAMIYWEYIAWI
FT                   KLNPGSTPMLWGYETFTGGWFRLWRDLHTPGEDVTYITIDWSRFDKRAYFWLIRKIFIR
FT                   TRCFLDFTNGYVSTKDYPTSPTDPDKLQALWEWTIEAFFDSPIVLPDGSMFKRLFAGIP
FT                   SGLFITQLMDSWYNYTMLAAILHYMGYDPRRCIIKVQGDDSIIRLYIQIPLHEHDLFLL
FT                   RMQEVSDHLFGAKISFEKSELRNSLIGSEVLSYRNIQGLPYRDLIKMLAQFYHTKAKDP
FT                   TPEITMAQAIGFAYAACGNDFRIHELLRSVYDYYKAQGFTPNPAGLTVVFGDSPDRPDY
FT                   PISLDEFPSQMDVQRFFLSTDYRNADQENRTWPSSHFLYAPCSRI"
XX
SQ   Sequence 2027 BP; 568 A; 618 C; 344 G; 497 T; 0 other;
     ggatcacccg acagaacagt caacacaaga ctttgagccc tgaaaattaa agctcactcg        60
     ctgctctctg catcacatcc actacacacc actcaccatg gattacctta ccggtttatt       120
     ctcacgcgtt ctccacatct ctcgcaaagt taccaacttc gagttcgctg gcacctacca       180
     ctaccaacct tcaataccac aagtaaatga agtcgccacc gaaaaccaca aacgcacctt       240
     acgtcacagt ttccgaactt acctcacatc tgacgagtac gacaagatcg tcaacggcta       300
     caaacggacc aatcttgacc catcgaccat caccgaagat ttcttctccg gcgacataga       360
     ggatcatccc gagccaaccg actttaaaag tcaactctca atcgagtacg gactgcaatg       420
     catgatcgac gctttcaagc cacctgcccc cgcacgtgtc tgtcatctct acgatgtaca       480
     atggcactac cctttcaaat ggcaagtaaa tgctgaagca cctttctcca ccgagaaata       540
     cttcctcgac cttcgcaaga agtttggcga tttctttgac ccagtcacaa aactctggac       600
     caagtacgtc aaccctctcg acgccctcag acgttacgga cacacacctc ccgccgacac       660
     actgaaccaa gtcactccac caaagtttgg cttcatgaag aacctcattt tttcattcgt       720
     tcattcctgg caacatgtca tcaaatctcg cttcacttcg aatgctggca tcacacactc       780
     taacttcctc cgtcaacgtt ttctctttcc tatgctacta cacatcaaga cagcaatcgt       840
     atctttcgat gctcccaaca aactcagatc tatctggggt gtttccaaac tctggatcat       900
     ctccgaagcc atgatctact gggaatacat cgcctggatc aagctgaacc ctggctctac       960
     accaatgcta tggggttacg aaaccttcac cggtggatgg ttccgccttt ggcgcgacct      1020
     tcacacaccc ggagaagatg taacctacat caccatagac tggtctcgct ttgacaagcg      1080
     cgcctacttc tggctaatcc gcaagatatt catccgaaca cgatgcttcc ttgacttcac      1140
     caatggatat gtctcaacca aagactaccc gacaagtccg accgaccccg acaagctaca      1200
     agctctctgg gaatggacaa tcgaggcatt ctttgacagt ccaatcgtcc tccctgacgg      1260
     ttcgatgttc aaacgactat tcgctggcat cccttctggc ctattcatca ctcaactgat      1320
     ggactcatgg tacaattaca ctatgttagc tgctatcctg cactacatgg gctacgaccc      1380
     ccgtcgatgt atcatcaaag tacaaggcga cgattcaatc attcgtcttt acatccagat      1440
     accccttcat gagcatgatc ttttcctact tcgaatgcaa gaagtttcag accatctttt      1500
     tggagcgaag atttccttcg agaaatccga acttcgcaac agcctaattg gctccgaagt      1560
     cctaagctac cgcaacatcc aaggtctacc ttaccgtgac ctgatcaaga tgcttgctca      1620
     gttttaccac accaaagcaa aggacccaac acctgaaatc acaatggcgc aagccatcgg      1680
     gttcgcctac gcagcctgcg gcaacgattt tcgtatccac gaacttcttc gctcagtcta      1740
     cgattactac aaggcccaag gtttcacacc taaccctgct ggattaacag ttgtttttgg      1800
     agacagtccc gaccgaccgg actatccaat atcgctggac gagttcccat ctcaaatgga      1860
     cgttcaacgt ttcttcctct caacagatta tcgcaatgcc gatcaagaaa acagaacctg      1920
     gccatcaagc cacttcttgt acgcaccttg ctctcgtatc tagttgctca attttaaatt      1980
     tcaaaaccaa aaaaattgaa aaaaaaaaaa aaatttaaaa aaaaccc                    2027
//