ID HQ537114; SV 1; linear; genomic RNA; STD; VRL; 4782 BP. XX AC HQ537114; XX DT 07-SEP-2011 (Rel. 110, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Tomato spotted wilt virus isolate ALPA segment M, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-4782 RX DOI; 10.1016/j.jviromet.2011.05.027. RX PUBMED; 21635923. RA Debreczeni D.E., Ruiz-Ruiz S., Aramburu J., Lopez C., Belliure B., RA Galipienso L., Soler S., Rubio L.; RT "Detection, discrimination and absolute quantitation of Tomato spotted wilt RT virus isolates using real time RT-PCR with TaqMan((R))MGB probes"; RL J. Virol. Methods 176(1-2):32-37(2011). XX RN [2] RP 1-4782 RA Aramburu J.M., Lopez C., Rubio L., Galipienso L., Soler S., RA Debreczeni D.E., Nuez F.; RT ; RL Submitted (02-NOV-2010) to the INSDC. RL Proteccion Vegetal y Biotecnologia, Instituto Valenciano de Investigaciones RL Agrarias, Ctra. Moncada-Naquera km 5, Moncada, Valencia 46113, Spain XX DR MD5; 6caa7a4b64030e5108731b50b2734f18. XX FH Key Location/Qualifiers FH FT source 1..4782 FT /organism="Orthotospovirus tomatomaculae" FT /segment="M" FT /host="pepper" FT /lab_host="Datura stramonium" FT /isolate="ALPA" FT /mol_type="genomic RNA" FT /country="Spain: Murcia" FT /collection_date="2006" FT /identified_by="Jose Aramburu" FT /note="Tsw pepper resistance-breaking" FT /db_xref="taxon:3052585" FT gene 101..1009 FT /gene="NSm" FT CDS 101..1009 FT /codon_start=1 FT /gene="NSm" FT /product="NSm" FT /note="putative plant cell-to-cell movement protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:G3E4M7" FT /protein_id="AEN94893.1" FT /translation="MLTFFGNKGSSKSAKKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMPSEKQV FT ILKGQGTITDPICFVFYLNWSIPKINNTPENCCQLHLMCSQEYKKGVSFGSVMYSWTKE FT FCDSPRADKDKSCVVIPLNRAIRARSQAFIEACKLIIPKGSSEKQIKKQLKELSSNLER FT SVEEEEEGISDSVAQLSFDEI" FT gene complement(1291..4698) FT /gene="Gn/Gc" FT CDS complement(1291..4698) FT /codon_start=1 FT /gene="Gn/Gc" FT /product="Gn/Gc precursor" FT /note="precursor of two virion membrane glycoproteins; FT proteolitically processed by a host proteinase yielding two FT glycoproteins; posible functions include virion structure FT formation and virus transmission by thrips" FT /db_xref="GOA:G3E4M8" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:G3E4M8" FT /protein_id="AEN94894.1" FT /translation="MRILRLLELVVKVSLFTIALSSVLLAFLIFRATDAKVETIRGDHP FT EVYDDSAENEVPTAASIQRKAILETLTNLMLESQTPGTRQIREEESTIPIFAEPTTQKP FT ISVSDLPNNCLNASSLKCEIKGVSTYNVYYQVENNGVIYSCASDSAEGLEKCDNSLNLP FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVISFSGSASITFTEEMLDGEH FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN FT KTTKPLFLWYDLIGLITYPILLLINCLWKYFPFKCSNCGNLCIITHECTKICICNKSKA FT SKEHSSECPILSKETDHDYNKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGLVILSQM FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDTIIESIFGTNIVIEG FT PNDCIENQNCIAHPSIDNLIKCRLGCEYLDLFRNKPLYNGFSDYTGSSLGLTSVGLYEA FT KRLRNGIIDSYNRTDKISGMIAGDSLNKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ FT SLLGGGGTVFMLNDKTSKTAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL FT KSTIVADVCISGILGGQCSRITEEVPYENALFQADIQADLHNDGITIGELIAHGPDGHI FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGDDMSWDCAAIGKKSITIKTCGYDT FT YRFRSGLEQISDIPVSFKDFSSFFLEKAFSLGKLKIVVDLPSDLFKVAPKGPSITSTRL FT NCNGCLLCGQGLSCILEFFSDLTFSTSISIDACSLSTYQLAVKKGSNKYNITMFCSANP FT DKKKMTLYPEGNPDISVEVLVNNVVVEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI FT KSPFNFIASYFGSFFDTIRVILLTAFIFLVIYFCSILTTICKGYVKNESYKSRSKIVDD FT DDSEIKAPMLMKDTMTRRRPPMDFSHLV" XX SQ Sequence 4782 BP; 1547 A; 849 C; 848 G; 1538 T; 0 other; agagcaatca gtgcatcaga aatataccta ttatacactt tgctaagaat caatcaatta 60 cattacacaa gctcctctac cttaggctgt tgaactcaaa atgttgactt ttttcggtaa 120 taaggggtct tctaagtctg ccaaaaaaga tgaaggtcct ttagtttcac tagctaaaca 180 taatggtaat gtagaagtct caaaaccatg gtcttcttct gatgaaaagc ttgctttgac 240 taaagctatg gatacatcca aaggaaagat actgttgaac acagagggaa catcttcctt 300 tggaacctat gaatctgatt ctatcacaga atcagagggt tatgatcttt ctgcaagaat 360 gatagtagat acaaaccacc atatctcaaa ctggaaaaat gatctttttg ttggcaatgg 420 gaagcagaac gctaataagg tcatcaagat ctgtccaact tgggacagca gaaaacaata 480 catgatgatt tccaggattg tgatatgggt ctgccccact ataccaaacc ctacagggaa 540 acttgtggtt gccctagttg atcccaacat gccatctgaa aagcaagtca ttctgaaggg 600 tcaagggaca ataactgatc ctatatgttt tgtcttttat ctgaactggt ctattccaaa 660 aataaataac actccagaaa actgctgtca gctgcatttg atgtgcagcc aagaatacaa 720 gaagggggtt tcttttggta gtgtcatgta ttcttggaca aaggagtttt gtgattcacc 780 cagagctgat aaagacaaaa gttgtgtggt tatacctcta aacagagcta ttagagctag 840 atctcaagca ttcattgagg cttgcaagct gataattcct aaaggaagca gtgagaagca 900 gattaaaaaa cagcttaaag agctgagctc aaatcttgag agatcagttg aagaagagga 960 ggaagggatt tctgatagtg ttgctcagtt atcttttgat gaaatatagt acttttaata 1020 ccacttattt aagtttaaat ttctgttaat tttgcatttt aaaatcaaaa aacaaaacaa 1080 aaaacaaaaa acaaaaagaa aaacaaaaaa caaaaaaatc aaaaacagaa aacaaaaaca 1140 aaataaggct gaaaagccaa actttggtcc gaagactctt tttgttgttt tttgtttatt 1200 tgtatttttt gtttgttttt gtttatttta tatatacata atctgactaa tgtagaaaat 1260 tgaatcaaat ttagcctgtg acaagcagtc tcagacaagg tgagagaaat ccataggtgg 1320 ccttcgtctt gtcattgtat ctttcattaa cataggggct ttgatctcag aatcatcatc 1380 atccactatc ttggatctag atttataaga ttcattcttg acatatcctt tacaaatggt 1440 tgttagaata gaacagaaat aaatcacaag gaaaatgaat gcagtaagca atatcactct 1500 gatagtatca aaaaacgagc caaaataact tgcaatgaaa ttgaatgggc tcttaatata 1560 atcccagaaa ccccatgcag aagaatcaga attatattgt tgttcttcat gagcatactc 1620 atcattttga tctattatgt tctctggttc ttctacgaca acattattga ccagaacctc 1680 cacagaaata tctggattgc cttctggata caacgtcatt ttcttcttgt ccggattagc 1740 agaacaaaac attgttatgt tgtatttatt tgaccctttt ttaacagcca gttgataagt 1800 agatagagag caagcatcta tagaaattga agtagaaaat gtcaaatccg agaagaattc 1860 taagatgcaa gataaacctt gaccgcatag aagacagccg ttgcaattta atcttgttga 1920 agttatggaa ggtcccttag gagcaacttt aaaaagatca gatggaaggt caacgacaat 1980 cttgagtttg cctaaactga aagctttttc caagaaaaaa ctagagaaat ctttgaaact 2040 aacaggaata tctgatattt gctctaaacc agatctaaat ctgtatgtgt catatccgca 2100 tgttttaata gtgattgatt ttttccctat tgctgcacaa tcccaagaca tgtcatctcc 2160 ttctagagtt ttcttagtaa aaataggtac tccatcatga gtcaattgtg ggtgaccaaa 2220 cattttgaca ggatcattca agtttgcaat atttccagaa taaatatggc catcaggtcc 2280 atgagctatc agttcaccta tagtgatacc atcattgtgc agatctgctt gtatatcagc 2340 ttgaaacaag gcattttcat aaggaacctc ttcagtgatc ctcgagcact gacctcctaa 2400 aataccagaa atacaaacat ctgccactat agttgatttt agcactgaat aaattctgta 2460 tgatttatcc atgtcataga tattccgaca gaatccacat gtagcacctt cattaattgc 2520 aaaacaccaa gcttcttcac atccccaata agaagttggt gttatacaaa aatcttggaa 2580 acctgttaaa gcctgatttt ttctgcaagt gtcacagttt cctgtacaag ttgaataaaa 2640 atctgtgtga gtactttgga taggggctgt tgtgtatttt tctgacactt cataatgaat 2700 tcccacactt ttgatataaa tcacaaattt tttggctgtt ttcgaggtct tatcattcaa 2760 catgaataca gtccctcctc ctcctaaaag agattgttct atcatgtatc tatatttccc 2820 gtctacaaca gaatcaaaga tcaatgattg tctaggcaga atgttctctg gtatgcttgt 2880 ttcatttttg tttagagagt ctcctgcaat cattccagaa attttgtctg tacgattata 2940 agaatctatt ataccattcc tcaatctctt agcttcatac agaccaaccg atgttaaccc 3000 taaagagctt cctgtataat ctgaaaatcc gttatacaaa ggtttgtttc taaataaatc 3060 taggtattcg caacctaatc tgcattttat aagattatca atagatgggt gtgcaatgca 3120 attctggttc tctatgcaat cattaggacc ttctataaca atgttagtgc caaagatact 3180 ttctataatc gtatcttctt ttacattaca gtaacattga tctttttcag ggcatttttc 3240 aaatttgctt gtaaccaaaa acggacagcc tggaacataa aaacacccac ttaaacattg 3300 ggtagtttga gccatagaca tgggcatttg agacaaaatg accaaaccta ttaagatttc 3360 agtcacaaat ttcagcaaac taaagctcag cttagtgttc actattagat ggaaccattc 3420 catgctagtc cacttatgtt tgttgtagtc atgatctgtt tctttggaca atatgggaca 3480 ctctgaagaa tgttcttttg aagctttgct tttgttgcag atgcaaattt tagtacattc 3540 atgtgtgatt atgcacaaat tgccacagtt agaacattta aatggaaaat atttccataa 3600 gcaatttatg agcaacaaaa tagggtatgt gatcaagcct ataagatcat accagagaaa 3660 gaggggtttg gttgtcttgt ttactaacca ccggataggg aaatagatca acaaagctat 3720 caatattaat cttatccaag aaaaattgat gcaggctgtt tgtttataaa tgctttttga 3780 atatttgatt atgcaatctc taactctttt gtttgttttt ggtattttag ctgatttgtc 3840 accgcacaag agattgtgct caccatccaa catttcctca gtaaaagtga tgcttgctga 3900 tccggaaaaa gatatgacct tgtgttccac attttcacca ggctttttta tcaaataacc 3960 catgatcttc tcagggctag tgatgctaac agtgtaggga ttagcaaagt ttgatttagt 4020 tattttgcag tcgccagata acttcacagt ttgtaatgat actgttccat tagtagggta 4080 cgagttataa gttataggat aattatcttg tgtcaggctt tctgaaatga agaattttgt 4140 tccaactgaa aaatgccttt tgttgtcaag tttagtaatg ggaataaccg ggactttaga 4200 gaatcttttt ggcagattta aagaattgtc acatttttct aaaccttctg ctgaatcaga 4260 agcacaggaa tatatgacac cattattttc cacttgataa taaacattat aagtggatac 4320 cccttttatc tcacatttta atgaagaagc attcaagcag ttgttaggaa gatccgagac 4380 agaaatcggt ttttgcgtag ttggttcagc aaaaataggg atggttgatt cttcttctcg 4440 tatctggcgg gttccaggag tctgagattc tagcatcaga ttagttaaag tctccaagat 4500 agccttgcgt tgaattgatg cagcagtggg tacttcattc tcagcagaat catcataaac 4560 ctcaggatgg tctccacgaa ttgtttctac tttggcatct gtggctctga agatcaagaa 4620 tgccaacaag acagaactca gggcaattgt gaaaagactc acttttacca ctagttctag 4680 tagtcttaaa attctcatct tagacgtctg ctcagattat aatggttata tgattaattt 4740 caagatgtct ggattaaggt ttttgtttgc actgattgct ct 4782 //