ID   HQ452339; SV 1; linear; genomic RNA; STD; VRL; 576 BP.
XX
AC   HQ452339;
XX
DT   08-MAY-2011 (Rel. 108, Created)
DT   08-MAY-2011 (Rel. 108, Last updated, Version 1)
XX
DE   Pepper mild mottle virus isolate TW coat protein (CP) gene, complete cds.
XX
KW   .
XX
OS   Pepper mild mottle virus
OC   Viruses; Riboviria; Virgaviridae; Tobamovirus.
XX
RN   [1]
RP   1-576
RA   Liao F.R., Shen J.G., Wu Y., Guo M.J., Huang P.Y., Chen Q., Chen H.Y.,
RA   Lin S.M.;
RT   "Detection and pathotype identification of Pepper mild mottle virus in
RT   sweet pepper seeds from Taiwan, China";
RL   Unpublished.
XX
RN   [2]
RP   1-576
RA   Liao F.R., Shen J.G., Wu Y., Guo M.J., Huang P.Y., Chen Q., Chen H.Y.,
RA   Lin S.M.;
RT   ;
RL   Submitted (29-OCT-2010) to the INSDC.
RL   Lab of Plant Quarantine, Inspection & Quarantine Technology Center, Xiamen
RL   Exit-Entry Inspection and Quarantine Bureau, No. 2165, Jiangang Road,
RL   Haicang, Xiamen, Fujian 361026, China
XX
DR   MD5; 98f3a497c9d583de17f7acf93fbed116.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..576
FT                   /organism="Pepper mild mottle virus"
FT                   /host="Capsicum annuum L. (sweet pepper)"
FT                   /isolate="TW"
FT                   /mol_type="genomic RNA"
FT                   /country="Taiwan"
FT                   /isolation_source="seed"
FT                   /collection_date="23-Apr-2010"
FT                   /PCR_primers="fwd_name: PMMoV-CP1, fwd_seq:
FT                   agaactcggagtcatcggac, rev_name: PMMoV-CP2, rev_seq:
FT                   gagttatcgtactcgccacg"
FT                   /note="type: P1,2,3 pathotype"
FT                   /db_xref="taxon:12239"
FT   gene            44..517
FT                   /gene="CP"
FT   CDS             44..517
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q76M57"
FT                   /db_xref="InterPro:IPR001337"
FT                   /db_xref="InterPro:IPR036417"
FT                   /db_xref="UniProtKB/TrEMBL:Q76M57"
FT                   /protein_id="AED88243.1"
FT                   /translation="MAYTVTSANQLVYLGSVWADPLELQNLCTSALGNQFQTQQARTTV
FT                   QQQFSDVWKTIPTATVRFPATGFKVFRYNAVLDSLVSALLGAFDTRNRIIEVENPQNPT
FT                   TAETLDATRRVDDATVAIRASISNLMNELVRGTGNYNQALFESVSGLTWATTP"
XX
SQ   Sequence 576 BP; 162 A; 116 C; 137 G; 161 T; 0 other;
     agaactcgga gtcatcggac gccgagtcat cttcgtttta actatggcat acacagttac        60
     cagtgctaat caattagtgt atttaggttc tgtatgggca gatccattag agttacaaaa       120
     tttgtgtact tctgcgttag gtaatcagtt tcaaacacaa caggctagaa ctactgtcca       180
     acagcagttc tctgacgtgt ggaagactat accgaccgct acagttagat ttcctgctac       240
     tggtttcaaa gtttttcgat acaatgccgt gctagattct ctagtgtcgg cacttctcgg       300
     agcctttgat actaggaata ggataataga agttgaaaat ccgcaaaatc ctactactgc       360
     tgagacgctc gatgcgacga ggcgagtgga tgatgctacg gtggctatta gggccagtat       420
     tagtaacctc atgaatgagt tagttcgtgg cacgggaaat tacaatcaag ctctgttcga       480
     gagcgtgagt ggacttacgt gggctacaac tccttaaaca tgatggtaaa attaagttgg       540
     acgaacatta aacgtccgtg gcgagtacga taactc                                 576
//