ID HQ449546; SV 1; linear; genomic RNA; STD; VRL; 5929 BP. XX AC HQ449546; XX DT 13-DEC-2010 (Rel. 107, Created) DT 01-JUN-2011 (Rel. 109, Last updated, Version 3) XX DE Ranunculus latent virus isolate Cy-42 polyprotein gene, partial cds. XX KW . XX OS Ranunculus latent virus OC Viruses; Riboviria; Potyviridae; Macluravirus. XX RN [1] RP 1-5929 RX DOI; 10.1007/s00705-011-0949-4. RX PUBMED; 21340739. RA Ciuffo M., Testa M., Lenzi R., Turina M.; RT "Ranunculus latent virus: a strain of artichoke latent virus or a new RT macluravirus infecting artichoke?"; RL Arch. Virol. 156(6):1053-1057(2011). XX RN [2] RP 1-5929 RA Ciuffo M., Turina M.; RT ; RL Submitted (28-OCT-2010) to the INSDC. RL IVV, CNR, Strada delle Cacce 73, Torino, TO 10135, Italy XX DR MD5; 8c60dd367ec896b5e3d8203d2f893c94. XX FH Key Location/Qualifiers FH FT source 1..5929 FT /organism="Ranunculus latent virus" FT /host="artichoke" FT /isolate="Cy-42" FT /mol_type="genomic RNA" FT /country="Italy" FT /collection_date="2005" FT /db_xref="taxon:341113" FT CDS <1..5670 FT /codon_start=1 FT /product="polyprotein" FT /note="contains CI, 6K2, NIa, NIb, and CP" FT /db_xref="GOA:E5LLA6" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:E5LLA6" FT /protein_id="ADR74229.1" FT /translation="THSSDHAKCCKCPLTFSWKSVFYKHEGKEQMGDMSIQVMTYGSAF FT FRSVHNPTFLDDFDAVFLDESHLITPHSLALESLLNKHTRVRKFYLSATPRNGISCDDV FT ARRFQIYEHTVEKCSVDEFIAQLDKGTATDPMKYGDKVLVFLAGKSECDKAASKVMSTN FT LGIKALSLHKSNFKSNYTKVMSSVDGGERVIVFATNILETGVTLNVDVVVDFGFTNSPV FT LDLTGKTFLLERRRVTQAERKQRIGRAGRLRDGHAIVVGKVGRTEELVSADVVYEAALI FT SFVYNIDIYINSHFDHVWIGNVTRQQAKTMINFRLPSFAMKDVVFPDGSVRDEFLKAVK FT DRTNRSANIKTLQGCTINPVYEGWPVLGTYAQKFGIAFEDSRYNALSKMRVPFIFHDMN FT ELDIEAYAEAAASYRPSVLTRWAKPAKEVSNVILHVNQRNVCEAIGVVRSLIASTKSLI FT QSKKHNQNLHRESPLACLFTKRTTLELESKLGEQIKLGERNLVKLTKLLGNLELFMNLD FT EMKDEEPELSSGDMEEIGRVLELQMQTTCNEDHIATVLHLEELPSTTFREAIVIGRKRV FT ACALVLMCIAAFGGLAWYYLWDDDTGLDNKWNKKNKKAVLKDVLEMKGKSFNRDKRSAT FT AYEKILKDSYEGEDNYNLDEFRTRRKGRVDADKTPFENLMTKAAPFITMYDITSDENVV FT NAVFMDHNKQAFYETADPLKNMGEVKKHLEQMKSKQPVFKWGDEADDDVFCDVTTRDGT FT TIRVRLTPHNSQRLTSTHGVQGYAQNEGRYRQTGDAEVLKMPTQHLEVNTRLADNMVNL FT DVGNMIGLVSVKGGNANCLLYKDWIIMPAHVMMCSLPVTLTFKHYTVTLSTMPECYSFV FT GFDLLAIKRPSTLAPVRCSATLESAKSGMTVQMLYKKPVVNKTLMTVTDVAYKTKEHRW FT EHQIPTVYGMCGAPMLDVSSGKIVGIHILGDTARKCNTFEGFPPDMLKLVNSNDPKVRN FT LFVRERVKAWEFVPEMHGHDSARIKNLQIDTIEFKQFTRDVSVYTVENLTRSATAGGLF FT KPREVTEKRSLPPTVSAIHMQNLAYSNGLLNTRHIFEGENPYWKQFKLCNEWVEPIVEK FT YEDNYMPSALNREAYWKDLLKYNRPQHLIKVDDVALKSSVVQLVRELERAGMTKTKIRT FT VDQVLEDIQWGKAAGPLYGMKKKELCKNLTMEELTSLALHCRSELNKGKNAGLWNGSLK FT AELRPKIKVEANKTRVFTAAPITTLIGSKFFVDDFNKQFYASHLKAPHTVGINKFSNGW FT AKVHEKLNRKGWLHGSGDGSRFDSSIDPFLFDMIYTIRCHFMCDDDKREATRAMSNMFR FT EFVFTPIHTISGNILVKNVGNNSGQPSTVVDNTLVLMLSFYYAYAVKTKDYAFDHIDDR FT FVFVCNGDDNKFAVSPAFVKEFGGIFTDEIAQLGLNYEFDTLTHDITANPYMSLTMISV FT CGRIGFQLNPERILGIVQWIKKGGVVHASQAAFAAMIESFNDPDLFSVMHSYLIWLLVT FT YRQELRYAMHNDLVSVVYMDPAQVFALHYNDEADHHAWFDEDSIESSSDDDEDDVQTQE FT LQMNREEIEAAAKKEQEDKAAAAKKESEEKEAEERARKGKGSIPGPNVTSSSADTSPEK FT GNEDVSEPQGDPEEKEDDVKWVMPALNPNRGGAVIPTINGKKLWRRGILKHVPKQQYDT FT TTTKATQTQLTNWVEAVKKDLRLKDDNAWALVLTVWCIWCADNGTSPEVDTDQELEIHD FT GLGKVQAVKIDTFVDPALENGGLRKIMRHFSGITQEILAKGGRMSAYGIKRGFTDKIMI FT PYAFDFMVADKRTPKAVREQLAQAKIAAIGQGIRRSMITDGGVKGSRVSHERHTDQDQD FT EFEHGHDFDRRPHLT" XX SQ Sequence 5929 BP; 1780 A; 1264 C; 1477 G; 1408 T; 0 other; acccactcaa gcgaccacgc aaaatgttgc aaatgccctc tcacattttc atggaaatct 60 gttttctaca aacacgaagg gaaggaacaa atgggcgaca tgagcattca ggtgatgacg 120 tacggatcag ctttctttcg tagcgttcac aacccaacct ttctcgatga ttttgatgcg 180 gttttccttg atgagtccca tctaatcaca ccccattcgt tggcgctgga atcattattg 240 aataagcata cgagggtgag aaagttttat ttgtcggcaa caccaaggaa tggcatctcg 300 tgtgatgatg ttgcccggag atttcagatc tacgaacata cggttgagaa gtgcagtgtg 360 gatgagttca tagcacaact agacaaggga acagcaacag atccaatgaa atatggtgat 420 aaggtgcttg tttttctcgc tggaaagagt gaatgtgata aggccgcgag taaagtcatg 480 agcacgaact taggcatcaa agctttatcg ttacacaaga gcaacttcaa atctaattat 540 acaaaagtca tgagtagcgt cgatggtggc gaacgcgtga ttgtgttcgc aacaaacatt 600 ttggagactg gcgtaacctt aaatgtggat gtggttgttg attttggctt cacgaacagt 660 ccagttctcg acctcactgg aaaaactttc cttttggagc gaagacgagt aacgcaagct 720 gagagaaagc aacgaatcgg tcgagcaggg agattgcgag atggtcacgc aattgttgtt 780 ggcaaagttg ggcgaactga agagctcgtc tcagcagatg tagtttatga agcagctttg 840 atatcatttg tttacaacat cgacatctat atcaacagcc acttcgatca tgtgtggata 900 ggaaacgtca caaggcaaca agcaaaaacg atgattaatt tcagactacc atcttttgcc 960 atgaaggatg ttgttttccc tgacggcagc gtgcgcgatg aatttttgaa ggccgtgaaa 1020 gatcgcacca ataggagcgc aaacatcaag actctgcaag ggtgtactat caaccctgtg 1080 tatgaaggtt ggcccgtgtt gggaacgtac gcgcagaaat ttggcatcgc gtttgaggac 1140 tcccgctaca acgccctctc gaaaatgcgt gttccattca ttttccatga tatgaacgaa 1200 ctcgacattg aagcttatgc tgaggccgct gcatcataca ggcctagcgt cctaacccga 1260 tgggcaaagc cagcaaaaga agtttccaac gttatattgc atgtcaacca gaggaatgtt 1320 tgcgaagcca tcggagttgt gcgatccctg atagcgagca caaagagttt gattcagagc 1380 aagaagcata accaaaactt acatcgcgag tcccccctag cgtgcttgtt cacgaagcga 1440 accacacttg agctggaatc caagcttggt gagcaaataa agcttggtga gcgtaacctt 1500 gtgaagttaa ctaagctgct tggaaacttg gaactcttca tgaatcttga tgagatgaag 1560 gatgaggagc ccgagctaag ctcaggggac atggaggaga ttggtagggt tctcgaatta 1620 cagatgcaaa caacatgcaa tgaggatcac attgccacgg ttctccacct agaggagcta 1680 ccaagcacga cgttccgaga agcaatcgtg attgggcgaa aacgtgtcgc ttgcgcactt 1740 gttcttatgt gcatagctgc ttttgggggc cttgcttggt actacttatg ggacgacgac 1800 acagggcttg ataataaatg gaataagaaa aataagaaag cagtgctcaa ggacgttctg 1860 gaaatgaaag ggaaatcctt taacagggac aaaaggagtg caactgctta cgagaagatt 1920 ctcaaggata gctacgaggg tgaagataat tacaaccttg atgaatttcg cactcggagg 1980 aagggacgtg tggacgcaga caaaacacca ttcgagaatc tgatgaccaa ggcagcgccg 2040 ttcatcacca tgtacgatat cacgtcagat gagaatgttg ttaatgccgt ctttatggat 2100 cacaacaaac aagcattcta tgaaactgct gaccctctca aaaatatggg agaagtgaag 2160 aagcaccttg agcagatgaa atccaagcaa ccagttttca aatggggaga tgaagctgac 2220 gatgatgtct tctgcgatgt cacaacaagg gacgggacaa caattcgcgt gagattgaca 2280 ccacacaact cccaaaggtt gacatcaaca catggtgttc aaggatatgc gcagaatgaa 2340 ggaaggtatc ggcaaactgg tgacgctgag gtgctcaaaa tgccaacaca gcacctagaa 2400 gttaacacga ggttggccga caacatggtc aacttagatg ttggcaacat gataggtctt 2460 gttagtgtaa aaggtggtaa tgcaaactgt ttgctgtata aagattggat tataatgccc 2520 gcccatgtga tgatgtgctc attgcctgta accctcactt ttaagcacta cactgtaacg 2580 ctatcaacaa tgccagagtg ttatagtttt gtcggtttcg atcttttggc aatcaaacga 2640 ccaagcacgc tcgcacccgt aagatgttct gcaacgcttg aatcagccaa gagcgggatg 2700 acagtgcaaa tgctatacaa gaaacccgtt gtcaacaaaa cactgatgac ggtaacggac 2760 gtggcttata agaccaagga acataggtgg gagcaccaaa ttcctactgt atatggaatg 2820 tgtggagcac ccatgctcga cgtttcatca gggaaaatcg ttggcataca cattctcggg 2880 gacacggcac gaaaatgcaa cacttttgag ggctttcctc ctgatatgtt gaaattagtg 2940 aactccaacg atcctaaggt tcgcaacttg ttcgttaggg agcgcgtcaa agcatgggag 3000 ttcgttcccg aaatgcatgg tcatgattcc gcacgtatca aaaacctgca aattgacaca 3060 attgagttta agcaattcac acgcgacgtt agcgtctaca cagtggagaa cttgactaga 3120 agcgcaacgg caggtggttt gtttaagcca cgagaggtaa cggaaaagcg cagcttgcca 3180 ccaacagtgt cggccataca catgcagaat ctcgcctact ccaatgggtt gttaaacacg 3240 aggcacatct ttgagggcga aaacccctat tggaaacaat tcaagttatg taatgaatgg 3300 gttgagccca tcgtggagaa gtatgaggac aactacatgc cgagtgcatt gaatcgcgaa 3360 gcttactgga aggatttgct aaaatacaac aggccgcagc atcttatcaa agttgatgat 3420 gtcgcactaa agtcgtctgt agttcaatta gttcgcgaac tcgagcgagc tgggatgaca 3480 aaaacgaaaa taagaacagt ggatcaggtt cttgaagaca ttcagtgggg aaaagctgcg 3540 ggcccgctgt atgggatgaa gaagaaggaa ctatgcaaga acctcacgat ggaggaacta 3600 acctcgctcg cactacactg tcggagtgag ttgaacaagg gcaagaacgc tggactatgg 3660 aatggatcac tcaaagctga acttaggcct aaaatcaagg ttgaggcaaa caagacacgc 3720 gtcttcacag ctgcacccat aacgacgctg attggttcca aatttttcgt cgatgatttt 3780 aacaagcagt tctatgcatc ccatctgaaa gctccacata cagttgggat caacaagttt 3840 agcaacggat gggcaaaagt acatgagaag cttaacagaa aaggatggct tcatgggagt 3900 ggagacggct cacggtttga ttcatccatc gatcctttcc tctttgatat gatctacacc 3960 atccgatgtc actttatgtg cgatgatgac aagagggaag cgacacgagc tatgtccaat 4020 atgtttcgcg aattcgtgtt cacaccaata cacacaatca gtggcaacat cttggtgaag 4080 aatgtcggga acaacagtgg gcaaccaagc acagtcgttg acaacaccct cgtgctgatg 4140 ttatcgttct actacgcata cgctgtgaaa acgaaagatt atgcgttcga tcacattgat 4200 gatcgtttcg tgtttgtgtg taatggggat gataacaaat ttgcagtttc accagcattt 4260 gtgaaggagt ttggcgggat ttttacggac gaaattgcac agcttggatt aaactacgag 4320 tttgacacac tcacacatga catcacagct aacccataca tgagcttaac gatgatatca 4380 gtctgcgggc gtattggatt ccaattaaac cccgagcgaa tcttgggaat agttcaatgg 4440 attaagaaag gaggtgtggt tcatgcatcc caagctgcat tcgctgcaat gattgagtcc 4500 ttcaatgatc ctgacttgtt cagcgtcatg cattcctacc tcatctggtt actcgtgacg 4560 taccgccagg aacttagata cgcaatgcac aatgatcttg tctctgttgt ttacatggat 4620 ccagcccaag tattcgccct tcactacaat gacgaagcag atcatcacgc ttggtttgac 4680 gaagattcca tcgaatcatc aagcgatgat gacgaggatg acgtgcagac gcaggagctt 4740 cagatgaacc gagaagagat agaagctgct gcgaagaagg agcaagaaga taaggctgca 4800 gccgcgaaga aagaatctga agaaaaggaa gctgaggaga gggcccgaaa agggaaggga 4860 agtatccctg gcccaaatgt gacatcaagt tcagccgaca catcccctga gaaaggaaac 4920 gaagacgttt ctgagccaca aggtgatcca gaggagaagg aggatgatgt gaagtgggtg 4980 atgccagccc tcaatccaaa ccgtggcggc gctgtcatcc caacaatcaa tgggaagaaa 5040 ctctggagga gggggatctt gaaacacgtc ccaaagcaac aatatgatac aaccaccact 5100 aaggcgacac aaacacaact cacgaactgg gtggaagccg tcaagaagga cttacgtctc 5160 aaggacgaca atgcatgggc attggtcctt acagtgtggt gtatctggtg cgccgacaac 5220 ggaacatccc ccgaggttga tacggaccaa gagctagaga tccacgatgg tttaggaaag 5280 gttcaagctg tgaagatcga cacgtttgtt gatccagcgc tagagaatgg tggcctaagg 5340 aaaatcatgc gccacttctc tggtattaca caggaaatct tagcaaaagg aggtcggatg 5400 tcagcttacg gcatcaagag gggtttcacc gataagatta tgatccccta tgcttttgat 5460 ttcatggttg ctgacaaacg aacgcccaaa gctgtgcgag agcagcttgc tcaagctaag 5520 attgccgcaa ttgggcaagg catcaggcgt agcatgataa cggatggtgg tgtcaagggg 5580 agcagagtca gtcacgaacg tcacaccgac caggaccagg acgaatttga gcatgggcac 5640 gatttcgatc gacgccctca tcttacgtag atattaagtt attttgatag cagtcaactt 5700 aatttaagtt ctttattgct ttcctttatt ttcgcacttt aaggttcaaa tgggggtttg 5760 tgtcacggtt cctccaccga cctgacgtga cgagtgcact gtctatgttt taaataaatc 5820 ccgcttaatc ctctctggat gcttagggat ctgcattgtc taggcctgat ctggatggtc 5880 ggccgcactt tagtgaatcc tattcccaaa aaaaaaaaaa aaaaaaaaa 5929 //