ID HQ439023; SV 1; linear; genomic RNA; STD; VRL; 5691 BP. XX AC HQ439023; XX DT 20-JUN-2013 (Rel. 117, Created) DT 20-JUN-2013 (Rel. 117, Last updated, Version 1) XX DE Cucurbit aphid-borne yellows virus strain CABYV-CZ, complete genome. XX KW . XX OS Cucurbit aphid-borne yellows virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5691 RA Xiang H., Shang Q., Dong S., Zhou C., Han C., Li D., Yu J.; RT "Sequence analysis of a novel CABYV strain infecting Zucchin in China"; RL Unpublished. XX RN [2] RP 1-5691 RA Han C.; RT ; RL Submitted (25-OCT-2010) to the INSDC. RL Plant Pathology, China Agricultural University, 2 Yuanmingyuan West Rd., RL Haidian District, Beijing 100193, China XX DR MD5; fc47dee4dde2477b464e01ddd9f44635. DR EuropePMC; PMC4422679; 25946037. DR EuropePMC; PMC4677746; 26673519. DR EuropePMC; PMC5120529; 27876078. XX FH Key Location/Qualifiers FH FT source 1..5691 FT /organism="Cucurbit aphid-borne yellows virus" FT /host="zucchini" FT /strain="CABYV-CZ" FT /isolate="Beijing" FT /mol_type="genomic RNA" FT /country="China" FT /db_xref="taxon:91753" FT 5'UTR 1..20 FT CDS 21..746 FT /codon_start=1 FT /product="P0" FT /note="ORF0" FT /db_xref="GOA:R9Q9J9" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:R9Q9J9" FT /protein_id="AEI55843.1" FT /translation="MQIESVKQQLVFRPSRQASTDDRRLSTSSFLTDYVYLYLFTRQYG FT ENFLRLFLARLPLLISEQLRGDYVYSPGASKCIILARFHRHCGAPLPSSSAVDLRLPTR FT KDVARFFLARHYSRDMGERLQRNQTSLFRGYAEFTKFVNVWCSSISRRLRESAPRDFST FT SDIFVELSNLGISLRDLVLTTGVHNRDALARVALYIHRIYGEDGGLDFWRLANLPSKNW FT PFNDARYLEGSVVQRELQS" FT CDS join(151..1479,1479..3320) FT /codon_start=1 FT /ribosomal_slippage FT /product="P1-P2 fusion protein" FT /note="ORF1-ORF2" FT /db_xref="GOA:R9Q9K2" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:R9Q9K2" FT /protein_id="AEI55845.1" FT /translation="MVKISCVFFLLACLCSSVSSYEGTMFIPLEPVNASYWLDSTAIAV FT PPSPHQVQLIYDCPPEKMLRDFSSRDIIQEIWERGYNETRLAFLEVMQNLQNLLMSGVR FT RSRAGLESLLHVTFQLVTYLWSSLIWASVCAIWYLLREYTIEMLLLASLYIYTVYMVKM FT VVWIFGGLPIFLLKTGLSMMRGISKVLWFKGNYKAEKSVEGFLSFKIPQTPPGKSVLQV FT QHQDGSHAGYATCVALYNGSTGLVTAHHVITPGAKIVSTRNGSKIPASEFRTKLENPKR FT DLILMTGPPNWEGALACKASQMQTANNLCKSKATFFAWNGEDWESSNAEIVGVSACRNY FT VSVLSNTDPGHSGTPYFNGKTLLGVHIGGANEENANYLAPIPAVPGLTSPKYVFESSAP FT QGRLFNDEEIAALIEEFSMSEVASIVRARKGKQRYVEEAAPQQGKRKRGGVRANNRPLL FT SHPGQRRKQYKRSINNCCSFFTEGTLAPRTIASHVHEPWNDEKPRCFCEIPGHDCFFRN FT FVGNQKCYTGENESPVNREAGCGSLSEEGHEESRKEATERQAEDFQRFFDSQYTWEPGS FT GKEAPGFKQVGSLPEFYRPKQKTGSKWGAKICRQHPEMGSYTQGFGWPQFGAQAELKSL FT RLQAARWLERAQSVKIPSSEERERVIRKCCEAYKNAKTIGPNATRGDSLSWDGFLEDFK FT QAVFSLEFDAGIGVPYIAYGRPTHRGWVEDPKLLPILARLTFNRLQKMLEVRFEHLSPA FT ELVQAGLCDPIRVFVKGEPHKQSKLDEGRYRLIMSVSLIDQLVARVLFQNQNKREITLW FT RAVPSKPGFGLSTDEQVVEFMKILSAQVGIAPKELINDWQSHLIATDCSGFDWSVSDWL FT LKDDMEVRNRLTLDINETTKRLRSAWLKCISNSVLSLSDGTLLSQEVPGVQKSGSYNTS FT SSNSRIRVMAAFHCGAEWAMAMGDDALESVSSNLAKYAELGFKVEVSPKLEFCSHIFER FT EDLAIPVNKAKMLYKLIHGYEPECGNVEVLINYLAACFSILNELRSDPSLVETLHQWLV FT LPVQSQKI" FT CDS 151..2046 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:R9Q9M2" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:R9Q9M2" FT /protein_id="AEI55844.1" FT /translation="MVKISCVFFLLACLCSSVSSYEGTMFIPLEPVNASYWLDSTAIAV FT PPSPHQVQLIYDCPPEKMLRDFSSRDIIQEIWERGYNETRLAFLEVMQNLQNLLMSGVR FT RSRAGLESLLHVTFQLVTYLWSSLIWASVCAIWYLLREYTIEMLLLASLYIYTVYMVKM FT VVWIFGGLPIFLLKTGLSMMRGISKVLWFKGNYKAEKSVEGFLSFKIPQTPPGKSVLQV FT QHQDGSHAGYATCVALYNGSTGLVTAHHVITPGAKIVSTRNGSKIPASEFRTKLENPKR FT DLILMTGPPNWEGALACKASQMQTANNLCKSKATFFAWNGEDWESSNAEIVGVSACRNY FT VSVLSNTDPGHSGTPYFNGKTLLGVHIGGANEENANYLAPIPAVPGLTSPKYVFESSAP FT QGRLFNDEEIAALIEEFSMSEVASIVRARKGKQRYVEEAAPQQGNENAAASAQTTGPYS FT ATRGNAESSTKEVSITAAPSSQKEPLPQEPSRATCTNHGMTKSRDVSVKSPDMTASSET FT LSEIKNAILERMNLQSIEKQVVEALAKKATRNRGRRQQKDKPKTSNDSSTPNTRGSREV FT EKKPLDSNRSAASQSFIAPSKRRGQNGGPRYAGNTQKWVPIPRASGGHSLAPRPN" FT CDS 3520..5526 FT /codon_start=1 FT /transl_except=(pos:4117..4119,aa:OTHER) FT /product="P3-P5 read-through protein" FT /note="ORF3-ORF5" FT /db_xref="GOA:R9Q9K0" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:R9Q9K0" FT /protein_id="AEI55848.1" FT /translation="MNTAVARNQNAGRRRRRNQRPIRRDRVVVVNPSGGPSRGRRQRRN FT RRRPNRGGRARGRSPGETFVFSKDNLTGSSSGSITFGPSLSESPAFSSGILKAYHEYKI FT IMVQLEFISEASSTSSGSISYELDPHCKLSSLQSTINKFGITKNGLRRWAAKQINGMEW FT HDATEDQFKILYEGNGSSSVAGSFRITIKCQVQNPKXVDGSSPPPPSPSPTPPPPPPPQ FT PQPQPCAQRLWGYEGNPQNKILTAENSRNIDSRPLNFVQMYKWEDEKWDKVNLQAGYSR FT NDRRCMETYLTIPADKGKFHVYLEADGEFVVKHIGGELDGSWLGNIAYDVSQRGWNIGN FT YKGCKIKNYQSNTTFVAGHPDATMNSKSFDSARAVEVDWYASFELECDDEEGSWAIYPP FT PIQKDSSYNYTVSYGNYTEKYCEWGAISVSIDEDNNGSAPRRIPRKGAMAWSTPEPSFS FT GDESQRQDFKTPSPEERGSDALESEETKEEENLLDRFEEENIPDADDEDIWKGISRGSE FT TGTTEDDRASTSSRLRGNLKPQGLPKPQPTRTITKFEPNPDLIEAWRPDLAPGYSKADV FT AAATVIAGGSIHEGRDMLRRRDEKVMDSRKKWGILSSASSLTSGSLKKLSAQSEKLAKL FT TTGERAEFERIKNSHGKTVAAEYLEMVLADKTS" FT CDS 3520..4119 FT /codon_start=1 FT /product="coat protein" FT /note="P3; ORF3" FT /db_xref="GOA:R9Q9H9" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:R9Q9H9" FT /protein_id="AEI55846.1" FT /translation="MNTAVARNQNAGRRRRRNQRPIRRDRVVVVNPSGGPSRGRRQRRN FT RRRPNRGGRARGRSPGETFVFSKDNLTGSSSGSITFGPSLSESPAFSSGILKAYHEYKI FT IMVQLEFISEASSTSSGSISYELDPHCKLSSLQSTINKFGITKNGLRRWAAKQINGMEW FT HDATEDQFKILYEGNGSSSVAGSFRITIKCQVQNPK" FT CDS 3548..4123 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:R9Q9J4" FT /protein_id="AEI55847.1" FT /translation="MQGGGGEEISALYGATAWLWSTPLGDHHAEDDNEETADALIEEAE FT LEEGAQAKHSYFQRTISRAVPQEVSPSGRLYQRAQHSALEYSRPTMNIRSSWSSWSSSP FT RPLPPPRAPSLMSWTPTASLAPSNPRLINLESPRMDCDVGQLNRSTGWNGMTQLRTNSR FT SSTKGTDLPRLQAASGSPSSARSKTRNR" FT CDS 4303..5526 FT /codon_start=1 FT /product="RTD" FT /note="ORF5" FT /db_xref="GOA:R9Q9M3" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:R9Q9M3" FT /protein_id="AEI55849.1" FT /translation="MYKWEDEKWDKVNLQAGYSRNDRRCMETYLTIPADKGKFHVYLEA FT DGEFVVKHIGGELDGSWLGNIAYDVSQRGWNIGNYKGCKIKNYQSNTTFVAGHPDATMN FT SKSFDSARAVEVDWYASFELECDDEEGSWAIYPPPIQKDSSYNYTVSYGNYTEKYCEWG FT AISVSIDEDNNGSAPRRIPRKGAMAWSTPEPSFSGDESQRQDFKTPSPEERGSDALESE FT ETKEEENLLDRFEEENIPDADDEDIWKGISRGSETGTTEDDRASTSSRLRGNLKPQGLP FT KPQPTRTITKFEPNPDLIEAWRPDLAPGYSKADVAAATVIAGGSIHEGRDMLRRRDEKV FT MDSRKKWGILSSASSLTSGSLKKLSAQSEKLAKLTTGERAEFERIKNSHGKTVAAEYLE FT MVLADKTS" FT 3'UTR 5527..5691 XX SQ Sequence 5691 BP; 1582 A; 1404 C; 1414 G; 1291 T; 0 other; acaaaagata cgagcgggtg atgcaaattg agtctgtaaa acaacaactt gttttcagac 60 cttcccgcca agcaagcaca gacgatcgaa gattatctac atcttcattc ttaaccgatt 120 acgtttattt gtatcttttt acaagacaat atggtgaaaa tttcctgcgt ctttttcttg 180 ctcgcttgcc tctgctcatc agtgagcagt tacgagggga ctatgtttat tcccctggag 240 ccagtaaatg catcatactg gctcgattcc accgccattg cggtgccccc ctcccctcat 300 caagtgcagt tgatttacga ttgcccacca gaaaagatgt tgcgcgattt ttcctcgcgc 360 gacattattc aagagatatg ggagagaggt tacaacgaaa ccagactagc ctttttagag 420 gttatgcaga atttacaaaa tttgttaatg tctggtgttc gtcgatctcg cgcaggctta 480 gagagtctgc tccacgtgac ttttcaacta gtgacatatt tgtggagctc tctaatctgg 540 gcatcagtct gcgcgatctg gtacttacta cgggagtaca caatcgagat gctcttgctc 600 gcgtcgctct atatatacac cgtatatatg gtgaagatgg tggtttggat ttttggcggc 660 ttgccaatct tccttctaaa aactggcctt tcaatgatgc gaggtatctc gaaggttctg 720 tggttcaaag ggaattacaa agctgagaaa tctgtggaag gatttctttc attcaaaatt 780 ccacaaaccc ctcccggtaa gagtgtgttg caagtgcagc accaggatgg atcccacgca 840 ggttacgcaa cctgcgtcgc actttataat ggatcaacag ggcttgtaac agcccaccat 900 gtgatcactc ctggtgctaa aatagtctcc actcggaatg gctccaaaat tcccgcctcc 960 gagtttcgca ctaaattgga aaatccaaag agagacttga tattgatgac tggcccaccg 1020 aattgggaag gggctttggc ttgcaaggca tcgcaaatgc aaactgccaa taatttgtgc 1080 aagtccaaag ccaccttctt cgcttggaat ggcgaggact gggagtcatc aaacgccgag 1140 atagtcgggg tttctgcctg tagaaattat gtctcggtgc ttagcaacac tgatcccggc 1200 cacagtggca ccccgtactt caatggaaaa acattgttag gtgtccacat tgggggcgct 1260 aacgaagaaa atgccaatta tttggccccc atccctgctg tgcctggact cacgtctcca 1320 aaatacgttt ttgagtcttc agcaccccaa ggccgcttat ttaatgatga agaaatagcg 1380 gctttaatcg aggagttcag catgtccgag gtcgcttcaa tcgtgagggc ccggaaaggt 1440 aaacaaagat atgttgaaga agctgctcct cagcagggaa acgaaaacgc ggcggcgtcc 1500 gcgcaaacaa ccggccctta ctcagccacc cggggcaacg cagaaagcag tacaaaagaa 1560 gtatcaataa ctgctgctcc ttcttcacag aaggaaccct tgccccaaga accatcgcga 1620 gccacgtgca cgaaccatgg aatgacgaaa agccgcgatg tttctgtgaa atccccggac 1680 atgactgctt cttccgaaac tttgtcggaa atcaaaaatg ctatactgga gagaatgaat 1740 ctccagtcaa tagagaagca ggttgtggaa gccttagcga agaaggccac gaggaatcga 1800 ggaaggaggc aacagaaaga caagccgaag acttccaacg attcttcgac tcccaataca 1860 cgtgggagcc gggaagtgga aaagaagccc ctggattcaa acaggtcggc agcctcccag 1920 agttttatcg ccccaagcaa aagacggggt caaaatgggg ggccaagata tgccggcaac 1980 acccagaaat gggttcctat acccagggct tcgggtggcc acagtttggc gcccaggccg 2040 aactgaaatc cttgcggctg caagccgcca ggtggctgga gcgcgcccag tccgttaaaa 2100 tcccctcatc tgaggaacgg gagcgcgtaa ttaggaaatg ctgcgaggcc tacaaaaatg 2160 caaaaactat agggcccaac gcaacaagag gagacagctt atcctgggat ggattcctcg 2220 aagattttaa gcaagctgtc ttctcgcttg aatttgatgc gggcatcggc gtaccataca 2280 tagcttatgg aaggccaacc caccgagggt gggttgaaga tccaaaattg ctgccgatcc 2340 tagctcgcct gaccttcaac cgtttacaga agatgttgga ggttaggttt gagcatctaa 2400 gtcccgcaga gcttgtgcag gcgggtctct gcgacccgat acgcgtgttt gtaaaaggtg 2460 aaccgcacaa gcagagcaaa ctagatgaag gccgctaccg cctcatcatg agcgtttcct 2520 tgatcgatca attggtagcc cgggttttgt tccaaaatca gaacaaaaga gaaattacat 2580 tgtggagggc tgtgccctct aaacccggtt ttggcttgtc cacggacgag caagtcgtgg 2640 agttcatgaa aatactctcc gcgcaggtgg gaattgcacc taaagaactg ataaacgatt 2700 ggcaatccca ccttattgcg actgactgct ccggcttcga ctggagcgtt tcggactggc 2760 tccttaaaga tgatatggaa gtccggaacc gcctaacgct ggatatcaat gagaccacca 2820 agcgcctgag atccgcttgg ttgaaatgta tctcgaacag cgtcctcagc ctctccgatg 2880 ggaccctctt gtcacaagaa gtccccggag tgcagaaatc tggcagctat aatacctcat 2940 cctccaattc caggattcga gtgatggctg cctttcattg cggggctgaa tgggcgatgg 3000 caatgggcga tgacgccctt gagtcagtca gctcaaacct agctaaatac gctgagctag 3060 gtttcaaagt cgaggtttcc ccaaaactgg aattttgttc acatatcttt gaacgcgagg 3120 acctcgccat tccggtcaac aaggccaaaa tgctttacaa gctcatacat gggtatgaac 3180 cggaatgcgg caacgtggaa gtactgatca attacttggc cgcctgtttc tcaattctga 3240 atgagttgcg gtccgatcct tcccttgtcg aaactctcca ccagtggctg gtccttccag 3300 tgcagtcaca aaagatataa ggggagtata aagaacacta gccaagcata cacgagttgc 3360 aagcattgga agtataagtc tcgtaaccaa gagtccacac aatagattac aaatttctcg 3420 caggattttc tagcggtcta ttgtctgcag tgccagttac ggtaatagga ctctattttg 3480 tctacctaaa gatttcagca cacgtgcgat caattgttaa tgaatacggc cgtggctaga 3540 aatcaaaatg cagggaggcg gaggcgaaga aatcagcgcc ctatacggcg cgaccgcgtg 3600 gttgtggtca acccctctgg gggaccatca cgcggaagac gacaacgaag aaaccgccga 3660 cgccctaatc gaggaggcag agctagagga aggagcccag gcgaaacatt cgtattttca 3720 aaggacaatc tcacgggcag ttcctcagga agtatcacct tcgggccgtc tctatcagag 3780 agcccagcat tcagctctgg aatactcaag gcctaccatg aatataagat catcatggtc 3840 cagctggagt tcatctccga ggcctcttcc acctcctcgg gctccatctc ttatgagttg 3900 gacccccact gcaagcttag ctccctccaa tccacgatta ataaatttgg aatcaccaag 3960 aatggattgc gacgttgggc agctaaacag atcaacggga tggaatggca tgacgcaact 4020 gaggaccaat tcaagatcct ctacgaaggg aacggatctt cctcggttgc aggcagcttc 4080 aggatcacca tcaagtgcca ggtccaaaac ccgaaatagg tagacggcag ctcccccccc 4140 ccccccagtc ctagcccgac tccaccacct ccaccacctc ctcagcctca accccaaccc 4200 tgcgctcagc gcctttgggg ttatgaaggc aacccacaga ataagatact cacggcagaa 4260 aattcaagga acatcgattc ccggccgttg aactttgtgc aaatgtacaa gtgggaggat 4320 gagaagtggg ataaggtcaa cttacaagcc ggatactccc gcaacgatcg acgttgcatg 4380 gagacgtatc tcacaattcc agcagacaaa ggaaaatttc acgtttacct tgaggctgat 4440 ggtgagttcg tcgtcaaaca tattggcggc gagttagacg gcagttggct tggaaatatc 4500 gcttacgatg tttcccagag aggttggaat attggaaatt acaaaggttg taaaattaaa 4560 aattatcaat ccaacacaac ctttgtggcg ggacaccccg atgctacaat gaattcaaaa 4620 agttttgatt cagcacgggc agttgaggtc gattggtacg cttccttcga actagaatgt 4680 gatgatgaag aaggaagttg ggctatatac ccccccccta tacagaagga ttcttcgtat 4740 aattataccg tttcatacgg gaattacacg gagaaatatt gcgagtgggg ggctatttca 4800 gtctcaatcg atgaagataa caatgggagc gcgcctagaa gaataccacg caagggggca 4860 atggcgtggt ctacccccga gccatccttt tcgggggatg aaagtcaaag acaagacttt 4920 aaaactcctt cgcccgaaga gcgaggttcc gatgctctgg aatcggaaga aacgaaggaa 4980 gaggaaaacc ttctagatag gtttgaggaa gaaaatatac ccgatgccga tgatgaagac 5040 atttggaagg gtatttcccg gggttctgaa accgggacca cagaagatga tcgagcatca 5100 acaagctctc gtcttcgtgg taacctcaag ccacaaggcc taccaaaacc acagcccacc 5160 cggactataa ccaagtttga acctaatcca gatttgattg aggcgtggag gcctgaccta 5220 gcacctggat actccaaagc ggacgtcgca gcagcgaccg tgatcgcagg agggagcatc 5280 cacgagggac gagatatgct taggcgaaga gacgagaaag tgatggatag caggaagaaa 5340 tggggaattc tttcctcagc ttcctctctc actagcggtt ctctaaagaa actcagcgca 5400 cagtcggaga agcttgccaa gttgactact ggtgagcgtg cagaatttga gcgaatcaag 5460 aattcgcatg gcaagactgt tgcagctgag tatctcgaga tggtgctagc tgacaaaacc 5520 tcataaccgc tctgtggaga cgagcgtgac tccacccggc gtccagtgag cctgaccaaa 5580 tcactgatga catcaaacca aagatgtaaa attggaacga ctccgaaagg ataggcaacg 5640 aacgttccca ccttagtgga aacaggggga ttccccctgg cgtttcggtg t 5691 //