ID HQ425778; SV 1; linear; genomic RNA; STD; VRL; 6175 BP. XX AC HQ425778; XX DT 09-MAY-2011 (Rel. 108, Created) DT 28-JAN-2013 (Rel. 115, Last updated, Version 2) XX DE Asclepias asymptomatic virus, complete genome. XX KW . XX OS Asclepias asymptomatic virus OC Viruses; Riboviria; Tymovirales; Tymoviridae; Tymovirus; OC unclassified Tymovirus. XX RN [1] RP 1-6175 RX DOI; 10.1094/PHYTO-05-11-0154. RX PUBMED; 22026416. RA Min B.E., Feldman T.S., Ali A., Wiley G., Muthukumar V., Roe B.A., RA Roossinck M., Melcher U., Palmer M.W., Nelson R.S.; RT "Molecular characterization, ecology, and epidemiology of a novel Tymovirus RT in Asclepias viridis from Oklahoma"; RL Phytopathology 102(2):166-176(2012). XX RN [2] RP 1-6175 RA Min B.-E., Nelson R.S.; RT ; RL Submitted (21-OCT-2010) to the INSDC. RL Plant Biology, The Samuel Roberts Noble Foundation, 2510 Sam Noble Pkwy, RL Ardmore, OK 73401-2124, USA XX DR MD5; d5549046bead077eda987c50c9ad4e8c. DR RFAM; RF00233; Tymo_tRNA-like. XX FH Key Location/Qualifiers FH FT source 1..6175 FT /organism="Asclepias asymptomatic virus" FT /host="Asclepias viridis" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="2007" FT /db_xref="taxon:1027880" FT 5'UTR 1..72 FT CDS 73..1974 FT /codon_start=1 FT /product="movement protein" FT /function="involved in movement" FT /note="overlapping protein" FT /db_xref="InterPro:IPR004935" FT /db_xref="UniProtKB/TrEMBL:F5A8F3" FT /protein_id="AEE02008.1" FT /translation="MSNGFSARSRRSLPNLPQGLVPSPCAGLRNGAHAQLSHHLSLDGP FT QRPPALSSPSRNSNFRIGHYPSPSSRAQSARNQSSLQPLALPCQNSILGAFHEAREIQQ FT APKEKSKLLRAPELPSDPKRLGPLPNHLPSPPKNRRRLHARRSHVLHSRTSSGCLPPHS FT KSAETFLQFGSAPRVRVHEPLTLTKSLHLPTSQPDPSLHPGKPLRRVLQPAPIGHSMAK FT NLFHPPPPDSTFCHNPGILGPPPLNPHTKRPAQPTFGRSQPLFIPSPPPPLPCSRPNLI FT QNSRVHRAASIHLPLPTPSSPAHPKESLRRPLHLHKSGSNPPNLRPRRLRSNPVEQTRI FT LLGDFKRLGQPSNLRAPELRHPTKCGLQLSPQPLPKTQNLSKPTLAPHRSGLRSHPILP FT NPPSSLPKLVFISPKGKVHFSLPPPLRPAPPSTSSPPNFPQASQPSTPPSSPDSFKSLP FT NLTSALTPPPTPTRNSPEFPHLSFRLSHQVPNLALPPRLLGAGTSSSRLKAHRRSVRAT FT AARPLPPPSPPSPIPPPVGKTSLLDDFEAKLSALRARRHSISSSSSPRSTPPQIPEHQP FT PALHFSQLELNPTFPPPQPPSHPTLFPPPRLHQHPSLPLHHLSTTHHQLPHQLLPKN" FT CDS 80..5506 FT /codon_start=1 FT /product="replicase" FT /db_xref="GOA:F5A8F4" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008043" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:F5A8F4" FT /protein_id="AEE02009.1" FT /translation="MAFQLALDALSQTSHRDSSLHPVLDSVMEPMRNSLTTFPWMVPND FT LQPFLLQAGIQTSGLGTTPHPHPVHKVLETNLLFNHWHFLAKTPSSVLFMKPEKFNKLQ FT KRNPNFSELLNYRVTPNDSVRYPTTSPHLPKTDVVFMHDALMYYTPEQVLDVFLRIPNL FT QKLFCSLVVPPESEFTNLSLSPNLYTFQLHNQTLHYIPENHYAGSYNQPLSAIQWLKIS FT SIHHPQIQLSVTILESWGPLHSILIQRGLPSQHLAGPNLFSSLLHPLPSPAADLISFKI FT PECIELPQSTFLSQPLRHRLIPKKAYDALFTYTRAVRTLRTSDPAGFVRTQSNKPEYSW FT VTSNAWDNLQTFALLNCAIRPNVVYNFLRNPFQKLKIYLSQHWRRIVAVSAPTLSFLTL FT LPHFLNWSLSLPKVKCISAFRHRFDQPPPQPLALQIFHKLVNHLPPQVLQTLSKVCQTL FT HLPSPLPPPRPGILPSFRISHSAYPIRFPTWLSLLACLVPELLVLGSKLTGDLSVQQQH FT DLYHHHLHPAQYHLQWERLPYSTTSRQNFLPFEPVATPSPPQAPLAQPPPKSRSTSPQH FT FTSPSWSSTQLSPHLSPLPTQPSSPPPDFINIPVSPSTTFRQPTTSFLTNSSPRTRSLY FT EYLLQYYHPGPPPLPQPASNGCHCEPCTQSEASSPTQNFPLQDPSSPYIVPPDPSTPIP FT EPPLLKDLSCTGPILSFQDLYPRNYYPNTALFLTRLRITPPKPLPLPPNDCLLQAISPS FT LSVSPSRLWLALQEIIPDCLLDNEEVHRLGLSTDLLTALCHYFNFKAEVISDGTSLHYG FT ISDSPVQIQIIHTSGSPGHYSPPPKLTGATPPREPPHPLTEQLLRFKFKGAHLPFSKVH FT SYSSSVAHAKNLVSNMKNGFDGILSLVESNVKHAPGCSPRDKIIMLDRLLDNAAPRSVH FT LIHIAGFAGCGKTHPLQHLLRTKPFHNFRVSVPTTDLRNEWKKDMALPSSQSHRFNTWE FT SSLFKHSNILVIDEIYKLPRGYLDLSIHSDPSISLIILLGDPLQGEYHSTSPHSSNHLL FT QSETERLSQFIDHYCWWTYRVPSHISDLFNVPSYNQSHGPFFGTVRLASSYSPGQHNLV FT NSMATSAAVNQLGYPSCTISSSQGMTFRKHVTILLDKHSRLLSPSNTLVALTRSTAGVE FT FLGDPMSLSGTNNSSDMFSRAMHQMPINLATCFPRIFHKLNLLREPIKHRSKRLLGSRP FT PSPIYLNPKKMHLPPHIPIDYALDYVLHNPHVFGSKDDPRLECNFLPPTRLALHSDLIS FT ANPSVPSLQPVDSDFRTPITPVYPGETFENLAAFFLPAHDPELKEILYKDQNSQQFPWF FT DRPFELSCQPSSLIAARHSPSQDPTLLPSSIKKRLRFRPSDNPHQFSADEIILGNHLFH FT SLCRAYNRNPNQTLPFNPSLFAECIALNDYAQLSSKTKSTIVANASRSDPDWRHTAVKI FT FAKSQHKVNDGSIFGPWKACQTLALMHDFVILSLGPVKKYQRLFDQADRPSHLYTHCGK FT TPQDLSLWCSAHLSHKTKVTNDYTAFDQSQHGESVILEALKMKRLSIPEHLILLHIHLK FT TNVSTQFGPLTCMRLTGEPGTYDDNTDYNIAVLYSQYNLQNTPVMVSGDDSLIDSKCPE FT LLSWPTIQSKLHLRFKTETTDYPLFCGYYVGSSGAIRNPLALFAKLMIAIDDQSISEKR FT LSYITEFSVGHSLGDSFWDLLPSEIHPYQSACFDYFCRNSPPHEKSILHNLPFSPTALS FT TITSSIKWLSKSAFSALPMRIRRAAIEKSQLPSSHENPEVSRLESELLHNFQ" FT CDS 5510..6076 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:F5A8F5" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:F5A8F5" FT /protein_id="AEE02010.1" FT /translation="METERVLVTQPAISTQTDLLSIPSSPNPPTITQPFQIEIAALGKE FT SYSDSISVAALSSIAAYTSLYKHAELHSLSATIHPTNSAPSNPTAVALAWVPYNSAASP FT TQILSVYGGMMFCIGGSIQTLKPIEVLCDLSKVNPILKSNVTFSDTPKLLIQSVAPDPP FT SKLPTCSITIKGMIRLHSPLLQASA" FT 3'UTR 6077..6175 XX SQ Sequence 6175 BP; 1471 A; 2347 C; 922 G; 1435 T; 0 other; ggtaatcttt accgaacagt cctctgatca cagacagctg ttctttaatt taattgtcaa 60 atacgtctgc caatgagcaa tggcttttca gctcgctcta gacgctctct cccaaacctc 120 ccacagggac tcgtcccttc accctgtgct ggactccgta atggagccca tgcgcaactc 180 tctcaccacc tttccctgga tggtccccaa cgacctccag ccctttcttc tccaagccgg 240 aattcaaact tccggattgg gcactacccc tcaccctcat cccgtgcaca aagtgctaga 300 aaccaatctt ctcttcaacc actggcactt ccttgccaaa actccatcct cggtgctttt 360 catgaagccc gagaaattca acaagctcca aaagagaaat ccaaacttct ccgagctcct 420 gaactaccga gtgaccccaa acgactcggt ccgctaccca accacctccc ctcacctccc 480 aaaaacagac gtcgtcttca tgcacgacgc tctcatgtac tacactccag aacaagttct 540 ggatgtcttc ctccgcattc caaatctgca gaaacttttc tgcagtttgg tagtgccccc 600 agagtcagag ttcacgaacc tctcactctc accaaatctc tacaccttcc aacttcacaa 660 ccagaccctt cactacatcc cggaaaacca ctacgccggg tcttacaacc agcccctatc 720 ggccattcaa tggctaaaaa tctcttccat ccaccacccc cagattcaac tttctgtcac 780 aatcctggaa tcctggggcc ccctccactc aatcctcata caaagaggcc tgcccagcca 840 acatttggcc ggtcccaacc tcttttcatc ccttctccac cccctcccct cccctgcagc 900 cgacctaatc tcattcaaaa ttcccgagtg catcgagctg cctcaatcca ccttcctctc 960 ccaacccctt cgtcaccggc tcatcccaaa gaaagcctac gacgccctct tcacctacac 1020 aagagcggtt cgaaccctcc gaacctccga ccccgccggc ttcgttcgaa cccagtcgaa 1080 caaaccagaa tactcctggg tgacttcaaa cgcctgggac aaccttcaaa ccttcgcgct 1140 cctgaactgc gccatccgac caaatgtggt ctacaacttt ctccgcaacc ccttccaaaa 1200 actcaaaatt tatctaagcc aacactggcg ccgcatcgta gcggtctccg ctcccaccct 1260 atccttccta accctccttc ctcacttcct aaactggtct ttatctctcc caaaggtaaa 1320 gtgcatttca gccttccgcc accgcttcga ccagcccccc cctcaacctc tagccctcca 1380 aattttccac aagctagtca accatctacc cccccaagtt ctccagactc tttcaaaagt 1440 ctgccaaacc ttacatctgc cctcacccct ccccccaccc cgacccggaa ttctcccgag 1500 tttccgcatc tctcattccg cctatcccat caggttccca acctggctct ccctcctcgc 1560 ctgcttggtg ccggaacttc tagttctagg ctcaaagctc accggcgatc tgtccgtgca 1620 acagcagcac gacctctacc accaccatct ccacccagcc caataccacc tccagtggga 1680 aagacttccc tactcgacga cttcgaggca aaactttctg cccttcgagc ccgtcgccac 1740 tccatctcct cctcaagctc ccctcgctca accccccccc aaatcccgga gcaccagccc 1800 ccagcacttc acttctccca gctggagctc aacccaactt tccccccacc tcagccccct 1860 tcccacccaa ccctcttccc ccccccccga cttcatcaac atcccagtct ccccctccac 1920 cacctttcga caacccacca ccagcttcct caccaactcc tccccaagaa ctaggagcct 1980 ctatgaatat ttgctccagt actaccaccc cggccccccc ccccttcccc aacccgcatc 2040 taacggatgc cactgcgagc cctgcaccca aagtgaagca tccagcccca cccaaaactt 2100 tcccctccaa gacccctcct ccccctacat tgttccaccc gacccttcaa ccccaattcc 2160 agagccccct ctactgaaag atctgtcttg cactggaccg atcctcagct tccaagacct 2220 ctacccccgc aactactacc caaacaccgc gctgttcctc accagactcc gcatcacccc 2280 cccaaaacca ctccccctcc caccgaatga ctgcttgctc caagcaatct ctccttcttt 2340 gtcagtcagt ccatccagac tttggcttgc tctccaggaa attattcccg actgcttgct 2400 tgacaatgaa gaagtccatc gcttgggctt gtccaccgac ctcctgaccg ctctctgcca 2460 ctacttcaac ttcaaagccg aggtaatttc tgacgggacc tctctgcact acggaatctc 2520 cgattctccc gtccaaatcc aaataataca tacctctggc tctcctggcc actacagccc 2580 tcccccaaaa ctcactggcg ccactccacc aagagaaccg ccccaccctc ttactgaaca 2640 gctcctccgc ttcaaattca aaggagctca tcttccattc tccaaagtcc attcttactc 2700 tagctccgtt gcccatgcta aaaacctagt gagcaacatg aaaaatggct ttgatggaat 2760 tctctctctt gtcgagagca atgttaagca tgctcctggc tgttctccca gagataaaat 2820 aataatgctg gaccgtctcc ttgataatgc cgcacctcgc tcagttcatt taatccacat 2880 agccgggttc gccggctgtg gcaagaccca tcccctccag cacctcctca gaactaaacc 2940 cttccataac ttccgagtct ctgttcccac caccgacctt cggaacgaat ggaagaaaga 3000 catggctctt ccttcaagtc agtctcatcg cttcaacacc tgggaatcct ccctcttcaa 3060 acattccaat atcctcgtca ttgatgaaat ctacaaactc ccccgaggtt atttggatct 3120 ctccatacat tccgaccctt ccatttctct catcatcctc cttggagacc ctctccaggg 3180 agagtatcat tccacttccc cccactcttc caatcacctt cttcaatcag aaactgagag 3240 actctcgcaa ttcatcgacc actattgttg gtggacgtac agagtcccat cccacatttc 3300 tgatcttttt aacgtccctt cctacaacca atcccacgga cctttctttg gaactgtccg 3360 actggcctca tcctactccc caggacaaca caacctggtc aacagcatgg caacttcagc 3420 cgctgtcaat caactaggct atccttcctg caccatcagc tccagtcaag gaatgacttt 3480 ccgcaaacat gtaacaatcc tccttgacaa acactcccga ctcctttccc caagtaacac 3540 actggtagcc ctcacaagat ccaccgctgg cgtggaattc cttggagacc ccatgtctct 3600 atccggcacc aacaactctt ctgacatgtt ctccagagcg atgcatcaaa tgccaatcaa 3660 tttggcaacc tgtttcccga gaatcttcca caagctcaac cttcttcggg aaccaatcaa 3720 acatcgatcc aagagactcc ttggatctcg acccccctcc ccaatttacc tcaaccccaa 3780 gaaaatgcac cttccccctc acattccaat cgattatgca ctcgattacg tgttgcacaa 3840 ccctcacgtc tttggctcca aagatgaccc tcgactggaa tgcaactttc ttccccccac 3900 tcgactcgcc ctacactccg acttaatctc cgccaatccc tcagtcccaa gcctccagcc 3960 tgttgactcc gatttccgca caccaatcac ccccgtttat cccggcgaga ccttcgaaaa 4020 tctcgcggcc ttcttcctcc ctgcccatga tcctgagctt aaagaaatac tctacaagga 4080 tcaaaacagt caacagtttc cctggtttga ccgccctttc gagctatctt gccagccctc 4140 ctctcttata gccgcccgac acagtccttc acaagacccg accctcctcc cctcctctat 4200 taagaaaaga ttgaggtttc gcccatcaga caacccccac caattctccg ccgatgaaat 4260 aatactgggg aatcatctgt tccactcact atgccgagcc tacaatcgaa acccaaacca 4320 aactctcccc ttcaatcctt ccctcttcgc tgaatgcata gctctcaacg actacgctca 4380 gctctcctcc aaaaccaaat ccaccatcgt cgccaatgct tcccggtctg acccagattg 4440 gagacatact gccgtcaaga tattcgccaa atcccaacac aaagtcaacg acggctcgat 4500 cttcggtcct tggaaagcct gtcaaacttt agcccttatg catgactttg tcattctcag 4560 cttggggcct gtgaaaaaat accaacgact tttcgaccaa gctgaccgac cctcacacct 4620 ctacactcac tgcggcaaaa ccccgcagga tctttctctg tggtgttcag cccatctctc 4680 ccacaaaacc aaagtcacca atgactacac cgctttcgac caatcccaac acggagaatc 4740 cgtcattctc gaagctctga aaatgaagcg cctctccatc cctgagcacc taatcctcct 4800 tcacatccac ctgaagacca acgtctccac ccaattcgga cccctcacct gcatgcgcct 4860 tactggagag cccggcactt acgacgacaa cactgactat aacattgccg tgctctactc 4920 tcaatacaac ctgcaaaaca cccctgtcat ggtctctgga gacgattcgc tcatcgactc 4980 caaatgcccc gaactcctct cctggcccac aatccaatcc aaactgcatc tccgcttcaa 5040 gaccgaaacc actgactatc ccctgttctg cggctactac gtcggctcat ccggagccat 5100 ccgcaacccc ctcgctctgt tcgctaagct aatgatcgct atagacgacc agtctatcag 5160 cgagaagagg cttagttaca taactgaatt ctcagtcgga cattcacttg gtgactcttt 5220 ctgggatctc ctccccagcg agattcatcc gtaccaaagt gcctgtttcg actatttctg 5280 cagaaactcc cccccccatg aaaaatccat actgcacaac ctccccttca gccccacagc 5340 tctctccact atcaccagct ccattaaatg gctctccaaa tctgctttct ccgctctgcc 5400 catgcgaatc cgccgagcag ccatagagaa gtctcaatta ccctcttccc acgagaaccc 5460 agaagtttcc cgtctagagt ctgaattgct tcacaatttt caatagacaa tggaaactga 5520 acgagtcctc gtcacccaac ccgccatttc cactcaaacc gaccttttgt ccatcccttc 5580 ttctcccaac ccacccacta tcacccagcc tttccaaatc gagatcgccg cactaggcaa 5640 agagtcttat tcagactcca tcagcgtggc cgctctctcc tccatcgctg cctacaccag 5700 cctctacaaa catgccgagc tccattcgct ctcggcaact atccacccta ccaattcagc 5760 cccctccaac ccgaccgccg tcgccctcgc ttgggtaccc tacaactccg ccgcttcacc 5820 cactcagatt ctgagtgtgt atggcggcat gatgttttgc atcggcggct ccatccaaac 5880 tcttaagcct atcgaggttc tctgtgatct ctccaaggtc aatccgatcc tcaaaagcaa 5940 cgtcaccttc tctgacactc ccaaattact catccagtca gtagctcctg accccccctc 6000 caaactccca acttgctcta tcaccatcaa aggcatgatc cgccttcact ctcctctcct 6060 ccaagcttcg gcctgagctc tcaaggtcac agctcgcgag tgcgaggcct gctaccctca 6120 cacagcaggt attggggtgc gactcccccg tctattccgg acgtcaccgg aacca 6175 //