ID   HQ424165; SV 1; linear; genomic RNA; STD; VRL; 2216 BP.
XX
AC   HQ424165;
XX
DT   14-DEC-2010 (Rel. 107, Created)
DT   14-DEC-2010 (Rel. 107, Last updated, Version 1)
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DE   Tomato aspermy virus strain BJ segment RNA3, complete sequence.
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KW   .
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OS   Tomato aspermy virus
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-2216
RA   Jin S., Liao Q., Shi W., Chen J.;
RT   "The 3a protein of tomato aspermy virus plays a role in suppression of
RT   post-trancriptional gene silencing";
RL   Unpublished.
XX
RN   [2]
RP   1-2216
RA   Jin S., Liao Q., Shi W., Chen J.;
RT   ;
RL   Submitted (20-OCT-2010) to the INSDC.
RL   Institute of Bioengineering, Zhejiang Sci-Tech University, No.2 Road,
RL   Xiasha, Hangzhou 310018, PR China
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DR   MD5; e686a5caec5e81a9bf51ebf0ea280f0d.
DR   RFAM; RF01084; TLS-PK3.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2216
FT                   /organism="Tomato aspermy virus"
FT                   /segment="RNA3"
FT                   /lab_host="Nicotiana benthamiana"
FT                   /strain="BJ"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Beijing"
FT                   /collection_date="Jun-2009"
FT                   /db_xref="taxon:12315"
FT   CDS             90..932
FT                   /codon_start=1
FT                   /product="3a protein"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:E5LCQ7"
FT                   /protein_id="ADR82075.1"
FT                   /translation="MAFSGTSRTLTQQSSAASTDELHNILFSRRAIQEMATKCDLGRHH
FT                   WMRADNAVCVRPLVPETTSNLLTRWFVSGYEAGELPSKGYMSVPQVLCAVTRTVTSDAE
FT                   GSLRIYLADLGDKERAPIDAQVVSLHNRDLPAIVSFHPTYDCPMEQLNGVGRCFALVIE
FT                   RYGYIGHNGTTASVCSNWQPKFSSKNNNYKPAAAGKTLVLPYDRLSELSGPSAVARLLK
FT                   SQLNMSASPHFQLPGIPVAQRAIGSESEDLEKSTGGQPNARVDSEPQVFSKPVVVNGI"
FT   misc_feature    1226..1915
FT                   /note="similar to coat protein"
XX
SQ   Sequence 2216 BP; 544 A; 520 C; 517 G; 635 T; 0 other;
     gtttaccaac caaccaacca ctactatcta tctatctgtg tgtgtgtgtg tgtgtgtgtg        60
     tgtgtgtgtt atggttgtgt aatcctccta tggcattttc aggtacaagt cggactctaa       120
     cacaacagtc ctctgcggca tcaactgatg agctacataa catattattt agccgcagag       180
     ccatccaaga gatggcgaca aaatgcgatc tcggtcgcca ccactggatg cgcgccgata       240
     atgcggtgtg tgtgcgaccc ctcgttccag aaaccacgtc caatctgctg acgcggtggt       300
     tcgtctccgg gtatgaagct ggagagttac catccaaggg atatatgagc gtccctcaag       360
     ttctttgcgc cgtcaccaga acagtcactt cagatgctga aggttccctt cgcatatatc       420
     tagccgatct tggtgataag gaacgtgcac ctatcgatgc acaagtcgtc agcttacata       480
     accgcgatct ccctgccatt gtctccttcc atcctactta tgactgtcct atggaacagt       540
     tgaatggagt cggtaggtgt tttgcacttg ttatagaaag atacggttat attggacata       600
     acggaactac cgcgagcgtg tgtagtaact ggcaaccgaa gttttcttcg aagaataata       660
     attacaagcc agccgccgca ggtaagactc tagtactacc ctatgacaga ttatctgagc       720
     tttcgggacc atcagccgta gccagattac tgaaatcgca gctcaatatg tcagcatccc       780
     cgcatttcca gttacctggg ataccggtgg ctcaacgtgc gataggtagt gagtctgagg       840
     atcttgagaa atcgacagga ggccaaccta acgctagggt tgattcggaa ccgcaggtgt       900
     tttcaaagcc ggttgtggtg aacggtattt gagcctgttg ttatatatat atgtgtattt       960
     gtgttatgtg tatagtatat atatacaagt gtaaatcgtt gtgttgtaga ttgatcactt      1020
     gagttccatg gattgggaag ggtacacatc tggtttatca aagcccgtga cattactttt      1080
     tgggttcaat tcccattagt ccctgtcagg ttcctttatc ttcacggatg cttccccatg      1140
     atgtagcgtt taagtatcaa tctgttgttg tttgtgctta attttcactt attgttagtg      1200
     tttcaccact gtcacacact ctagaatggc ccaaaacggt acgggaggag gaagccgacg      1260
     tccacgtcgt ggtcgtcgta ataataacaa caacaactcg actgctcgtg ataaagctct      1320
     tttggctttg acgcagcaag tcaatcgctt agcgaatata gcttcctcta gtgcgccatc      1380
     ccttcaacat ccgactttta ttgctagcaa gaagtgtcgt gcaggttata cttacacttc      1440
     gttggatgtt cgaccgacta gaactgagaa ggacaagagt tcggtcaaag gttaattatc      1500
     cctgtacccg tgtctgaata tcctaagaag aaggtctcat gtgtgcaagt gagactgaac      1560
     ccatccccaa agttcaattc tacgatttgg gtctcgcttc gtcgtctgga cgaaacgact      1620
     cttcttactt ctgaaaacgt gtttaaactg ttcaccgacg gccttgcggc cgtccttatt      1680
     tatcagcacg ttcccaccgg tattcaacct aacaataaga tcaccttcga catgtctaat      1740
     gtcggtgctg agatcggcga tatgggtaaa tatgccctaa tagtctattc taaagacgat      1800
     gtcctcgaag ccgatgaaat ggtgatccac attgatatag agcaccagcg tattccttcc      1860
     gcttcaacgc tcccggtgtg attcgacacg catgcacgac gtccgaagac gttaaactac      1920
     gcttgaaccg tgttcgagtg tctgagttgg tagtattgct ctaaactacc tgaagtcact      1980
     aaatgcttat gcagtgaacg ggttgtccat ccagctaacg gctaaaatgg tcagtcatat      2040
     cgtgagatat gccgtcggtc tttgatcgat gaggtgcctt tgaacccttt atcccggggt      2100
     tcttcggaag gtgagacttg aattccagag tctcgccgtg cacggtatca cactgatgat      2160
     accttcagag tgcaggcatc gcctacggtt ttccgtaggt tcccctaggg gtccca          2216
//