ID HQ424164; SV 1; linear; genomic RNA; STD; VRL; 3023 BP. XX AC HQ424164; XX DT 14-DEC-2010 (Rel. 107, Created) DT 14-DEC-2010 (Rel. 107, Last updated, Version 1) XX DE Tomato aspermy virus strain BJ segment RNA2, complete sequence. XX KW . XX OS Tomato aspermy virus OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3023 RA Jin S., Liao Q., Shi W., Chen J.; RT "The 3a protein of tomato aspermy virus plays a role in suppression of RT post-trancriptional gene silencing"; RL Unpublished. XX RN [2] RP 1-3023 RA Jin S., Liao Q., Shi W., Chen J.; RT ; RL Submitted (20-OCT-2010) to the INSDC. RL Institute of Bioengineering, Zhejiang Sci-Tech University, No.2 Road, RL Xiasha, Hangzhou 310018, PR China XX DR MD5; ea3e78569f9ff5323efb19657255ade3. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3023 FT /organism="Tomato aspermy virus" FT /segment="RNA2" FT /lab_host="Nicotiana benthamiana" FT /strain="BJ" FT /mol_type="genomic RNA" FT /country="China:Beijing" FT /collection_date="Jun-2009" FT /db_xref="taxon:12315" FT CDS 88..2574 FT /codon_start=1 FT /product="2a protein" FT /db_xref="GOA:E5LCQ6" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:E5LCQ6" FT /protein_id="ADR82074.1" FT /translation="MSTFSLENCLNGSYGVDTPEEVAFIRRRDANPSAFHGEETVPSNT FT TEVHSESVSYSSDFEGYSCDSDFTGDNQYSSSDGADSLLISYDIDEYIDLSESELRVLF FT DEMVQPIHFGMVLSPTFSRNRFLSCLSLAKSVVVAPLYDPERTLRPFPELVKNLYSGVH FT DIYLSDSEEATVSSVTDTIEGYTFSPRDVVDNYEPPPLCSVCGLIAYQCPHYDINSLRK FT NFAEMTIAHDYPIEGLCGLIDDATLLKNLGSFLLPIQCEYTKLPEPTLITPPELTRPTD FT RVTVDLLQAVCDSTLLTHVRYDDTYHQTFIENADYSVDIDRVRLKQSDLLAKVIDEGHL FT KPVLNTGSGQKRIGTTREVLCAIKKRNADVPELCGSVNLKRLSDDVAECFMLSFMNGDK FT LCSSNFINIVSDFHAYMSKWQSVLSYDDLPDLNAENLQFYEHMVKSDVKPSVTDTLNID FT RPLPATITFHRKQLTSQFSPLFTALFQRFQRCLTKRVILPVGKISSLEIKDFSVLNKFC FT LEIDLSKFDKSQGELHLMIQEGILNRLGCPVHISKWWCDFHRMSYIKDKRAGVSMPISF FT QRRTGDAFTYFGNTLVTMSMFAWCYDTSQFDKLIFSGDDSLGFSIKAPVGDPSLFTSLF FT NMEAKVMEPSVPYICSKFLLTDDFGNTFSVPDPLREIQRLGSKKIPLDEDDRSLHAHFM FT SFVDRLKFLNHMNQTSMTQLSLFYETKYRKSGDDILLVLGAFNKYTANFNAYKGLYYSE FT KQQCALINSFSISDLIVGRGKSSKASRRKAIESNGKHRDPSTRDHSKVGTDESKETSTE FT EATQTEPQGAGSQKSK" FT misc_feature 2447..2729 FT /note="similar to 2b protein" XX SQ Sequence 3023 BP; 798 A; 664 C; 639 G; 922 T; 0 other; gtttgtctat caagagcgta cggttcaacc cctgcctccc ctgttagcac ccaatcgtta 60 ctactctatc cgttccgttt gttcattatg tcgactttct ccctcgagaa ctgcttaaat 120 ggttcatacg gtgttgacac tcccgaggaa gtcgctttta ttagacgtcg tgatgccaat 180 ccttctgcat ttcacggtga ggaaactgtt ccgtctaata ccactgaagt acacagtgag 240 agtgtctctt attcttccga ctttgaagga tactcctgtg actctgattt cacaggtgat 300 aatcaatact catcgtctga tggtgccgat tctctattaa tatcttatga tattgatgag 360 tacattgatt tgtcggaatc tgaattacgt gtcttgtttg atgaaatggt ccaacctatt 420 catttcggta tggttttaag cccgactttc tcgaggaaca gatttctatc ctgcttgtct 480 ttagcaaaat ctgttgttgt cgcaccattg tacgatcccg aacgcacttt aagaccattt 540 cctgagcttg tgaagaattt gtactcaggt gtccatgata tttatttatc tgactctgaa 600 gaagcaactg tcagctcagt cacagacaca atcgagggtt acaccttttc tcctcgagat 660 gtagtagata attatgaacc tccaccactc tgttctgttt gtggattaat cgcatatcaa 720 tgtcctcatt acgatatcaa tagtctccga aagaatttcg ccgagatgac tattgctcat 780 gattatccga ttgaaggtct ttgcggtttg atcgatgacg ctaccctatt gaagaactta 840 ggttccttct tattaccgat ccagtgtgag tatactaagc ttccggagcc tacgttgatt 900 acgcctcccg aactcacgcg cccaacagat agagtgactg tagatctact acaagctgta 960 tgcgattcca ctttactaac ccacgtccgt tatgatgaca cgtatcacca aacttttatc 1020 gaaaatgctg attattcagt cgatattgat cgtgtcaggt tgaagcagtc cgacctgtta 1080 gcgaaggtca tcgatgaagg acatttaaaa cctgtgttaa acacaggtag tggacagaaa 1140 agaatcggca cgactagaga ggtcctgtgc gcaattaaga aaagaaacgc tgacgtgccc 1200 gaattgtgtg gttccgttaa tcttaagcgc cttagtgatg acgttgctga gtgttttatg 1260 cttagtttta tgaatggcga taagttgtgt tccagtaatt ttattaatat tgtgagtgat 1320 ttccatgcct acatgagtaa gtggcagtct gttctcagtt atgacgactt acccgatttg 1380 aatgctgaaa atctccaatt ttacgaacac atggtgaagt ccgacgtgaa accttccgtc 1440 actgatactt tgaatatcga tcgcccatta ccagccacca tcacatttca tcgaaaacag 1500 ttgacctccc agttctcccc actatttacg gcgctgtttc aacgctttca acgatgttta 1560 acgaaacgcg tcatcctccc cgtcggaaag atatcttctc tagagatcaa agacttcagt 1620 gtgttgaata aattttgtct cgagattgat ttatcaaaat tcgacaaatc tcaaggggag 1680 ctgcatctta tgattcaaga gggaatcctt aatcgtttag gatgtcccgt tcatataagt 1740 aaatggtggt gcgactttca ccgtatgtca tatattaaag ataaaagggc tggagtcagc 1800 atgcccataa gtttccaacg acgtactggt gacgctttta catactttgg caatactctc 1860 gttactatgt ccatgttcgc ctggtgttat gacacctctc aatttgacaa attgattttc 1920 tccggtgatg actcactggg attctcaata aaggcaccgg ttggtgatcc aagcttgttc 1980 acctctcttt ttaacatgga agccaaagtt atggagccct ccgtcccgta tatatgctcc 2040 aagtttttac tcacagacga tttcggtaac accttttcag tcccggatcc cttgcgtgag 2100 atccaaaggt taggttctaa gaaaatccct cttgatgagg atgatcgatc tctacatgct 2160 cattttatga gttttgttga tagattgaaa ttcttaaatc atatgaacca gacctctatg 2220 actcaactat ctctctttta cgagacgaaa taccgaaagt ctggtgacga tatcttacta 2280 gtacttggtg catttaataa gtacacggcc aactttaacg cctataaagg gttgtattat 2340 tctgaaaagc agcagtgtgc attgatcaat tcgttttcta taagtgattt gattgttggt 2400 cgtggaaaat cttcgaaagc ttctaggagg aaagcgattg agagtaatgg caagcatcga 2460 gatccctcta cacgagatca ttcgaaagtt ggaacggatg aatcaaaaga aacaagcaca 2520 gaggaagcga cacaaactga accgcaagga gcggggtcac aaaagtccaa gtgaacaaag 2580 gcgatcggag ttatggcacg cacgtcaagt tgaactttct gccattaatt ccgataattc 2640 ttcagatgag ggtaccactc tgtgtcgctt gagcacctga cacatttggt tccaagtctg 2700 aacgtccgaa gacgttaaac tacgcttgaa ccgtgttcga gtgtctgagt tggtagtatt 2760 gctctaaact atctgaagtc actaaacgct tgtgcggtga acgggttgtc catccagcta 2820 acggctaaaa tggtcagtca tatcgtgaga tatgccgtcg gtctttgatc gatgaggtgc 2880 ctttgaaccc tttatcccgg ggttcttcgg aaggtgagac ttgaattcca tgtagagtct 2940 cgccgtgcac ggtatcacac tgatgatacc ttcagagtgc aggcatcgcc tacggttttc 3000 cgtaggttcc cctaggggtc cca 3023 //