ID HQ424163; SV 1; linear; genomic RNA; STD; VRL; 3409 BP. XX AC HQ424163; XX DT 14-DEC-2010 (Rel. 107, Created) DT 14-DEC-2010 (Rel. 107, Last updated, Version 1) XX DE Tomato aspermy virus strain BJ segment RNA1, complete sequence. XX KW . XX OS Tomato aspermy virus OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3409 RA Jin S., Liao Q., Shi W., Chen J.; RT "The 3a protein of tomato aspermy virus plays a role in suppression of RT post-trancriptional gene silencing"; RL Unpublished. XX RN [2] RP 1-3409 RA Jin S., Liao Q., Shi W., Chen J.; RT ; RL Submitted (20-OCT-2010) to the INSDC. RL Institute of Bioengineering, Zhejiang Sci-Tech University, No.2 Road, RL Xiasha, Hangzhou 310018, PR China XX DR MD5; 94708f6413eda26bbc1600e6fa54262c. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3409 FT /organism="Tomato aspermy virus" FT /segment="RNA1" FT /lab_host="Nicotiana benthamiana" FT /strain="BJ" FT /mol_type="genomic RNA" FT /country="China:Beijing" FT /collection_date="Jun-2009" FT /db_xref="taxon:12315" FT CDS 96..3077 FT /codon_start=1 FT /product="1a protein" FT /db_xref="GOA:E5LCQ5" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:E5LCQ5" FT /protein_id="ADR82073.1" FT /translation="MAASAFNIHKLVASHGDKGLLASALVDKLAHEQLEERVQHQRRGL FT KVYIRNALDVKDSEIIRDRYGGKYDLHLTQQEQAPHGLAGAPRLCELLDCLDSFPRTGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHTERLMTMRKVIVNDPDTFESRV FT PDFCTLPAEDCKVQAHFAISIHGGYDMGFKGLCRAMHAHGTTFLKGTMMFDGAMLFDTE FT GYLADLKCKWKKIKPRTYESEDQTPLLSRISDNLTTTIKDHTLIASDFVDESTLSYVHK FT WENVKSFLTDQTYSYKGMTYGLERCLIQHGIMTYKIIAVPGTCPPELIRHCIWFTSLKD FT YVGLKIPVSQDLVEWKTVRILISTLRETEEIAMRCYSDKKNWLEQFKVILGVLSSKSST FT IVINGMAMQAGERIDTSDYHYIGLAILLHTRMKYEQLGRMYDMWNSTFIRKFFASLTRP FT MRVFLSACVKTLFPTLRPRDEKEFLVKLSTFVTFNEVCQVDLDAEWDVISSAAFTAEMA FT VEDGKRLAEDRKQKAEAASQIPVDEIPDDTAESSDDIPREADTNQKSEPSSPELESLST FT QTRSPITRLAQRASSMLEYSAYEAQLHDNAVSNLDRMWCMAGGDKKNNRLESNVKFVFE FT TYHIVDPLVNVHFPTGRWLYRVPEGISYSVGFNENGIGPKADGELYIVNADCVISNSKC FT LADTTLQYLAPTGTISLVDGVAGCGKTTAIKKMFNPATDVIVTANKKSALGVRQALFNC FT TDSKEATTFVRTADSILMNDTNEVQRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSE FT QIAFCSRDASFDMRHSTIIPDETDTADTTFRSPQDVIKVVKCMASKALKRGTHSKYASW FT VSQSKVQRSVSSKAVASVTMVDLTEDRFYIAMTQADKTALRTRARELNMSNDFIEHRIK FT TTHESQGVSEDHVTLVRLKTTKCDLFKAFKYCLVAVTRHKKTFRYEHVGKLDGDLIAEC FT LARV" XX SQ Sequence 3409 BP; 944 A; 743 C; 772 G; 950 T; 0 other; gtttgtctat caagagcgta cggttcaacc cctgcctccc ctgttagcaa ccctttgtca 60 gttttctatc ttaactactc tgttttctaa ttcctatggc agcgtccgct tttaatattc 120 acaagctagt cgcctcccac ggcgacaaag gactgctcgc atctgccctc gttgataaac 180 tagcacacga acagctagag gagcgagtac aacatcaacg tagaggcctt aaggtctaca 240 tccgtaatgc tttggatgta aaggattccg aaatcattcg ggatcggtat ggtgggaagt 300 acgatctcca cctcacccag caagaacaag ctcctcatgg gcttgctggt gccccccgcc 360 tgtgtgagct actcgattgt ctagactcct ttccccgaac tggtctgcgg caggacctgg 420 tcttagactt cggtggtagt tgggtcacac actacctccg cggacataac gtacattgct 480 gctctccttg tctcggtatt cgtgataaga tgcgtcacac cgaacgacta atgacgatgc 540 gcaaagtgat agtgaatgat cctgatacat tcgaatcacg agtgccggat ttctgcacat 600 taccggccga agattgcaaa gttcaagccc actttgctat atctattcat ggaggttatg 660 atatgggctt caaaggatta tgtagagcta tgcacgctca cggaaccaca tttttgaagg 720 gaacaatgat gttcgatggt gccatgctat tcgatactga gggatacctt gctgatctga 780 agtgtaaatg gaagaaaata aaaccccgaa cttacgaatc tgaagatcag actcctctgt 840 tatcgagaat cagtgataat ctcacgacca cgatcaaaga tcacacactg atagcatctg 900 actttgttga cgagtccact ctctcctatg ttcacaagtg ggagaatgtg aagtcttttc 960 taactgatca gacttactcg tataaaggta tgacctatgg tcttgaacgt tgtcttatcc 1020 aacatggtat aatgacgtac aagattatag cagtacctgg gacttgtccg cccgaattga 1080 tacgtcattg catttggttc acatccttga aagattatgt tggtctaaaa atacctgtct 1140 cacaggattt ggttgagtgg aaaaccgttc gaattttaat ttccactctc cgtgagacgg 1200 aagagatcgc catgcgctgc tacagtgata agaaaaactg gctcgaacaa ttcaaggtaa 1260 ttctgggtgt attgtcatcc aaatcaagta ccatagtcat caacggtatg gctatgcagg 1320 ccggtgagcg cattgataca agtgactacc attatattgg tttagcgatc ttgctacata 1380 ctcgcatgaa gtatgagcag ttgggtagga tgtatgatat gtggaacagc acgtttatca 1440 ggaaattttt tgcttcatta acgcgcccca tgcgagtgtt cctctccgct tgcgtcaaaa 1500 ctctgttccc taccctaaga ccacgcgacg aaaaggaatt ccttgtcaaa ctatcaacat 1560 ttgtcacttt taatgaagtt tgtcaagttg atttagatgc tgaatgggat gttatttctt 1620 ccgctgcatt tacagccgaa atggctgtcg aggacggtaa acgtctagcc gaagatagaa 1680 aacagaaagc tgaagctgca tctcaaattc ccgtcgatga aatacctgac gacactgcag 1740 aatcgtcaga tgatatcccg agagaagctg atacgaatca aaaatcagag ccctccagcc 1800 cggaactaga aagtttatcc actcaaactc gttctcccat cacgaggttg gctcagaggg 1860 caagttctat gcttgaatac tcggcctatg aagcacaatt acacgataac gctgtctcaa 1920 atttggacag aatgtggtgt atggccggcg gtgataagaa aaataatcga cttgaaagta 1980 acgtaaagtt cgtattcgag acttaccaca tcgttgaccc tcttgtgaat gtccactttc 2040 ctactggtag gtggttgtat agagttccag aagggatatc atattcagtt ggttttaatg 2100 aaaatggtat aggacctaaa gccgatggtg aactctatat tgtcaacgct gattgtgtaa 2160 tttcgaatag taaatgtcta gctgatacca cgctccaata cctagccccc actggtacta 2220 taagtttagt tgacggtgtt gctgggtgtg ggaaaaccac tgctataaag aaaatgttta 2280 atcccgcgac tgatgtgatt gtcactgcta ataaaaaatc agcgttgggt gttagacaag 2340 ctttgtttaa ttgcactgac tcgaaggaag caacaacctt cgtgcgaact gccgattcca 2400 ttttgatgaa tgatacgaat gaagtccaac gtgttctcgt cgatgaggtc gtattattac 2460 actttgggca actatgtgct gttatgtcga agctaaaagc agtgagggcc atttgtttcg 2520 gtgattccga acaaatagcg ttctgttctc gtgatgcatc ctttgatatg cgtcattcaa 2580 cgataatacc tgatgagaca gacacagctg acacaacttt ccgcagtccg caagacgtta 2640 ttaaggtagt aaaatgtatg gcatctaaag cattgaaaag ggggacacat tctaaatatg 2700 catcatgggt ctcccaatct aaggttcaga gatccgtgtc ctctaaagca gttgctagtg 2760 ttacgatggt tgatttaact gaggatcgat tttacatcgc catgactcaa gctgacaaaa 2820 cagccttacg tacgagggct cgagaattga acatgtcaaa tgatttcatt gagcatcgta 2880 taaaaaccac ccacgaatct caaggggtaa gtgaggatca tgtcacatta gtaaggctga 2940 agaccaccaa atgcgatcta tttaaggctt ttaaatattg cttggtggcc gtgactagac 3000 acaagaaaac attcaggtat gaacatgtcg gtaaattaga tggtgattta attgctgagt 3060 gtctagcacg ggtgtgattc atcacaccgt ttagtccgaa gacgttaaac tacgttcgaa 3120 ccgtgttcga atgtccgagt tggtagtatt gctctaaact acctgaagtc actaaatgct 3180 tatgcagtga acgggttgtc catccagcta acggctaaaa tggtcagtca tatcgtgaga 3240 tatgccgtcg gtctttgatc gatgaggtgc ctttgaaccc tttatcccgg ggttcttcgg 3300 aaggtgagac ttgaattcca gagtctcgcc gtgcacggta tcacactgat gataccttca 3360 gagtgcaggc atcgcctacg gttttccgta ggttccccta ggggtccca 3409 //