Dbfetch

Dbfetch

ID   HQ394211; SV 1; linear; genomic RNA; STD; VRL; 1898 BP.
XX
AC   HQ394211;
XX
DT   17-APR-2011 (Rel. 108, Created)
DT   17-APR-2011 (Rel. 108, Last updated, Version 1)
XX
DE   Southern rice black-streaked dwarf virus isolate YJ-M segment S9, complete
DE   sequence.
XX
KW   .
XX
OS   Southern rice black-streaked dwarf virus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus.
XX
RN   [1]
RP   1-1898
RA   Yin Y.-Y., Wang D., Dong J.-H., Zhang Z.-K.;
RT   "Molecular identification of maize rough dwarf disease in Lijiang (Yunnan,
RT   China)";
RL   Unpublished.
XX
RN   [2]
RP   1-1898
RA   Wang D., Dong J.-H., Zhang Z.-K.;
RT   ;
RL   Submitted (12-OCT-2010) to the INSDC.
RL   Institute of Biotechnology and Germplasma Resources, Yunnan Academy of
RL   Agricultural Sciences, Xueyun Road No. 9, Kunming, Yunnan 650223, China
XX
DR   MD5; 7c9abe94feb3f767c438604aae28a29f.
DR   EuropePMC; PMC4379580; 25807053.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1898
FT                   /organism="Southern rice black-streaked dwarf virus"
FT                   /segment="S9"
FT                   /host="maize"
FT                   /isolate="YJ-M"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="17-Sep-2009"
FT                   /db_xref="taxon:519497"
FT   CDS             51..1094
FT                   /codon_start=1
FT                   /product="p9-1"
FT                   /note="nonstructural protein"
FT                   /db_xref="InterPro:IPR009268"
FT                   /db_xref="UniProtKB/TrEMBL:F5A191"
FT                   /protein_id="AEB40349.1"
FT                   /translation="MADQERRTFGSYKIEELTIRNDQPARNTNLSLSQSTENRLSAKKI
FT                   PLLDDGIFELLNYLIDGTNFNKTCYCGFNYSHLPNLERDFNIASLYVCENFEICTDQLD
FT                   LANYVRQPNISIKSPDFTVCLEYVLKTVVESESSTKDQKDDESQKPTSTDSTKNEQEKK
FT                   FVEMSLLPLLNRESEESLTEEILEGEGAVVNVLKLFIKGFLMHLGENPNSYDRQLTVEK
FT                   YRPLLVSIVGYEYLVGTTVPEKKINHIYYQLATFDNYPFDLLRFQLSSLISTPTSILER
FT                   ITKEGLFKIITSSTLRGAPRQTVLFRGINGSESFLNIKRYRRFRTRIVGNADSVIKSDF
FT                   SSLKLDV"
FT   CDS             1158..1787
FT                   /codon_start=1
FT                   /product="p9-2"
FT                   /note="nonstructural protein"
FT                   /db_xref="GOA:F5A192"
FT                   /db_xref="InterPro:IPR009650"
FT                   /db_xref="UniProtKB/TrEMBL:F5A192"
FT                   /protein_id="AEB40350.1"
FT                   /translation="MNPQSSVNIDTYTFNCPFELAKIQIESAKPIMQDFSDFDEIFERP
FT                   LSDSELDDRVEKLELDIEAKVDPVVRRKYGKVGHIMLMIFSFLFFGIFKLTLKMFYHLF
FT                   RCVCCNPLIRGIFSVVCTVVFYIVIFTLIYLVYFFFGDQILAVYHSLTEMSDSGLINST
FT                   KIEEKVNNIIHEGSLFFGSVDPNTGHFQEVEKQVFNGGTVNYTLFH"
XX
SQ   Sequence 1898 BP; 587 A; 333 C; 325 G; 653 T; 0 other;
     aagtttttag cctggaactg acacattcct gcaggaacga acgcaagaga atggcagacc        60
     aagagcgtag aacgtttgga tcatataaaa tagaagaatt gacaattaga aacgaccaac       120
     cagcaagaaa tacaaacctt tcactttctc aatcgaccga gaatcgtctt tcggccaaga       180
     aaattcccct actcgacgac ggcatttttg aacttttgaa ctacctcatt gatggaacca       240
     atttcaacaa aacgtgttat tgtggattta attattctca tctcccaaat ctagaacgtg       300
     actttaacat cgcttctttg tatgtatgtg aaaatttcga aatttgcaca gatcaattgg       360
     acttggctaa ctacgttcga caaccgaaca tcagcattaa atctcctgac ttcacagttt       420
     gtttggaata cgttttgaaa actgtcgttg aaagcgaatc ctcaactaaa gaccaaaaag       480
     atgatgaatc acagaaaccc acctccactg attcaactaa gaatgagcaa gaaaagaagt       540
     ttgttgaaat gtctttgctt cctctgttaa atcgcgaatc tgaagaatcc ttgactgaag       600
     aaattttaga aggtgaaggc gcagtggtaa acgtacttaa actattcatt aaaggatttt       660
     tgatgcattt aggtgagaat ccaaattctt atgatcgtca actaaccgtt gaaaaatatc       720
     gtccattatt ggtttctatt gttggctatg aatatctagt cggtactaca gttcctgaaa       780
     agaaaatcaa tcacatttat tatcaacttg caacttttga taattaccca ttcgatcttt       840
     taaggtttca actttcttca ctaatttcca ctccaacttc aatattggaa agaataacaa       900
     aagaaggttt gtttaaaatt attacatcaa gcactttgcg aggtgcccca cgtcaaactg       960
     ttttgttcag aggtatcaac ggtagtgagt catttttgaa catcaaaaga tatcgtcgtt      1020
     ttagaaccag aattgttggt aatgctgata gcgttattaa gtccgacttt tcttcactta      1080
     aattggacgt ttgatacttt acttcttggt caatttcatt gtatatcaat ggttgaagaa      1140
     tttttctttt ctacattatg aacccacagt cttcagttaa tattgatacg tatacattca      1200
     actgtccctt tgaattagca aaaatccaaa ttgaatccgc gaaaccaatt atgcaagatt      1260
     ttagtgattt tgatgaaatt tttgaacgtc ctttgtctga ttcggaattg gatgatcgag      1320
     ttgaaaaatt ggaattagat attgaagcca aagttgatcc tgtggtaaga agaaaatacg      1380
     gtaaagttgg tcatataatg ttaatgattt ttagctttct tttctttggg atttttaaat      1440
     taacgcttaa aatgttttat catctttttc ggtgtgtatg ttgtaatcct ttaattcgag      1500
     gaatttttag tgttgtttgt actgtagttt tctacatagt catttttacg cttatttatt      1560
     tagtttattt tttctttggt gatcaaatcc ttgctgtata tcattctttg accgagatga      1620
     gcgattctgg tttaatcaac tccaccaaaa tcgaagaaaa ggttaacaac atcattcacg      1680
     aaggttcttt attttttggt tccgttgatc ctaatactgg ccactttcaa gaagtcgaaa      1740
     aacaagtgtt caatggaggt actgtaaatt atactttgtt tcactaagtt tctattttat      1800
     gtgactctga aaatattcac gctcgtaagt cgattttctt gcagttgtgt atacgctacc      1860
     caacaaattc gttctcaagc cggcttacag ctgatgtc                              1898
//