ID   HQ394210; SV 1; linear; genomic RNA; STD; VRL; 1801 BP.
XX
AC   HQ394210;
XX
DT   17-APR-2011 (Rel. 108, Created)
DT   17-APR-2011 (Rel. 108, Last updated, Version 1)
XX
DE   Rice black streaked dwarf virus isolate LJ-M segment S10, complete
DE   sequence.
XX
KW   .
XX
OS   Rice black streaked dwarf virus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus.
XX
RN   [1]
RP   1-1801
RA   Yin Y.-Y., Wang D., Dong J.-H., Zhang Z.-K.;
RT   "Molecular identification of maize rough dwarf disease in Lijiang (Yunnan,
RT   China)";
RL   Unpublished.
XX
RN   [2]
RP   1-1801
RA   Yin Y.-Y., Wang D., Dong J.-H., Zhang Z.-K.;
RT   ;
RL   Submitted (12-OCT-2010) to the INSDC.
RL   Institute of Biotechnology and Germplasma Resources, Yunnan Academy of
RL   Agricultural Sciences, Xueyun Road No. 9, Kunming, Yunnan 650223, China
XX
DR   MD5; 84536d3f94da77f3bf1f26b264553616.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1801
FT                   /organism="Rice black streaked dwarf virus"
FT                   /segment="S10"
FT                   /host="maize"
FT                   /isolate="LJ-M"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /db_xref="taxon:10990"
FT   CDS             22..1698
FT                   /codon_start=1
FT                   /product="p10"
FT                   /note="capsid protein"
FT                   /db_xref="InterPro:IPR008618"
FT                   /db_xref="UniProtKB/TrEMBL:F5A190"
FT                   /protein_id="AEB40348.1"
FT                   /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNNLFHE
FT                   LNIVKAPHVASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKDHIRSFFQNEHQ
FT                   PIFQTLTNNDLSEEFVGVTTFGLSLFATSKLDAEQIERVQIETLTEGNITLKPFSADGL
FT                   EVILDDSYIGIVGKIPGLEVHKLLDKCCREVPAQMGILTDEVRLLMRTGKLRIDGGYDF
FT                   NCPASTTDVTHYGGYDQFSRQMFERLNLFYNISLSIIPVSALKTVHLFEKELSVLDADK
FT                   SLLEQTWSAVASFVETWQIKSKVKTDDPDEYELSSLSTLRTNYDGTSTSSPFTDKKFID
FT                   WYIKTFSKIEKGSSLRRNELEEKSATSTSTSVKKVKIHFSVQYFDEFKANGHEKSIVVQ
FT                   THKGEMSLDYYRKIGEVLSAIWKRGKSLAVPCFDYIKLGVEKAFHLAPVIMKKYNLTID
FT                   DIINFIDKGPSYLAKLDKIDDWSLISKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA
FT                   NNLLKSDRDRLLKKALSANDSSSNTPSHEHVQKIVLNKVTR"
XX
SQ   Sequence 1801 BP; 582 A; 329 C; 313 G; 577 T; 0 other;
     aagttttttt cctcacccat aatggctgat ataagactcg acatagcgcc cgatcttatc        60
     cataatggtg taccccagag actttccgat actataattt taaacaatcg accaacaatc       120
     actctactct ctcatttcaa caatctattt catgaattaa acatagtcaa agctccccac       180
     gttgcatctt cccaaactac cgtcaattta tacattcgta aacatttgtt gacccgactt       240
     catgacagac tgcaaaccgt tgaaactagc accctaccca atattaccca acttaaagat       300
     catattcgta gtttctttca gaatgaacac caacccattt ttcaaacctt aacaaataat       360
     gacttaagtg aagaatttgt aggtgtgact acttttggac taagtttatt tgctacctcc       420
     aaacttgatg ctgaacaaat tgaacgtgta caaattgaaa ctttgactga aggaaatatc       480
     acgctgaagc ccttttctgc tgatggttta gaagtcattc ttgatgatag ttatattggt       540
     atagttggta aaattccagg tttagaagtt cataaattgt tagataaatg ttgccgtgaa       600
     gttcctgctc aaatgggaat acttactgac gaagttagac ttttaatgcg tactggtaaa       660
     ctaagaattg atggtggcta cgatttcaac tgtcctgcaa gtactacaga tgttactcat       720
     tacggtggtt acgaccaatt ttctcgtcaa atgttcgaac gtttgaatct cttttataat       780
     attagtctca gcataatccc tgtttcagct ttgaaaacag ttcatttgtt tgaaaaagaa       840
     ttaagtgttt tggatgcaga taaatctcta cttgaacaaa cttggagcgc agtagcgtca       900
     ttcgttgaaa cttggcaaat taaatcaaaa gttaaaaccg atgatcccga tgaatacgaa       960
     ctttccagtt tgtccactct acgtactaat tatgatggta cttccacttc tagtcccttt      1020
     acagacaaga aatttattga ttggtacatc aaaacctttt ccaaaattga aaaaggatcg      1080
     tcgttgcgta gaaatgaatt agaagagaaa agcgctacta gtacttcgac ttcagtaaag      1140
     aaagttaaaa ttcatttttc tgttcaatat tttgacgaat ttaaagctaa tggtcatgag      1200
     aaaagtattg tagttcaaac tcataaaggt gaaatgtcat tagattatta tcgtaaaatt      1260
     ggtgaagtat taagtgcgat ttggaaacgc ggtaagtcat tggctgtacc ttgttttgat      1320
     tacattaaac taggcgttga gaaagcattt catttggcac ccgtaattat gaagaagtac      1380
     aatttgacga tcgacgacat tatcaatttt attgataaag gaccttctta tttagctaaa      1440
     ctggacaaga ttgatgattg gtctttaatt tcaaaactta ttatcactag tgttttgcct      1500
     aatatcattc aagctgttta taaaaccgat ccaagtaata atgttatgaa ctcagtaatc      1560
     atcagtagag cgaacaactt gttaaaatct gatagggaca gactgttgaa gaaggcactt      1620
     tccgccaacg attcttcctc taatactcct agtcatgaac atgtacaaaa gattgtatta      1680
     aacaaagtaa caagatgacc actgggaata catcattagt gcgactagtt cagtgctgtg      1740
     cggtcttcag tttattatcg atgccgagtg acgacggcta gggggaaatt cagctattgt      1800
     c                                                                      1801
//