ID   HQ394209; SV 1; linear; genomic RNA; STD; VRL; 1899 BP.
XX
AC   HQ394209;
XX
DT   17-APR-2011 (Rel. 108, Created)
DT   17-APR-2011 (Rel. 108, Last updated, Version 1)
XX
DE   Rice black streaked dwarf virus isolate LJ-M segment S9, complete sequence.
XX
KW   .
XX
OS   Rice black streaked dwarf virus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus.
XX
RN   [1]
RP   1-1899
RA   Yin Y.-Y., Wang D., Dong J.-H., Zhang Z.-K.;
RT   "Molecular identification of maize rough dwarf disease in Lijiang (Yunnan,
RT   China)";
RL   Unpublished.
XX
RN   [2]
RP   1-1899
RA   Wang D., Dong J.-H., Zhang Z.-K.;
RT   ;
RL   Submitted (12-OCT-2010) to the INSDC.
RL   Institute of Biotechnology and Germplasma Resources, Yunnan Academy of
RL   Agricultural Sciences, Xueyun Road No. 9, Kunming, Yunnan 650223, China
XX
DR   MD5; a6d2f5abadcbeec4fbfb1264a210fc94.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1899
FT                   /organism="Rice black streaked dwarf virus"
FT                   /segment="S9"
FT                   /host="maize"
FT                   /isolate="LJ-M"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /db_xref="taxon:10990"
FT   CDS             33..1094
FT                   /codon_start=1
FT                   /product="p9-1"
FT                   /note="nonstructural protein"
FT                   /db_xref="InterPro:IPR009268"
FT                   /db_xref="UniProtKB/TrEMBL:F5A188"
FT                   /protein_id="AEB40346.1"
FT                   /translation="MNERKRMADQERRTFGSYKIEGLTIRNDQPNRNTNSSNSQSTENR
FT                   LSTKKIPLLDDGIFELLTYLIDGTNFDKTCYCGFNYSHLPNLERDFNVASIYVRENFEL
FT                   CTEHLNLKDYDRQATISVKSPDFTLFLEYTLKPSLETDSPILEKENEETEKSAPPKVTP
FT                   PKEEKRTVEMSLLPILNRESEETLNSEILEGEAAVVNVFKMYIKGFLMYLGENPNSYDR
FT                   QLNIEKYRPLLISILGYEHLIGTRVTHKEVNHIFYQLATFDNYPFDLLRFQLSSLISTP
FT                   PLIREKIAKEGLFKIITSNPLRGASRQTALFRGINGSESFLNMKRYRKFRTRVVGNVDS
FT                   VIKSDFSSLKLDV"
FT   CDS             1159..1788
FT                   /codon_start=1
FT                   /product="p9-2"
FT                   /note="nonstructural protein"
FT                   /db_xref="GOA:F5A189"
FT                   /db_xref="InterPro:IPR009650"
FT                   /db_xref="UniProtKB/TrEMBL:F5A189"
FT                   /protein_id="AEB40347.1"
FT                   /translation="MNPQSSVNVDTYTFNCPFELAKIQIQSMKPIMQDFSNFDDIFERT
FT                   LSDSEIDDRVEQLEVDVESKVDPIVRRKYGKIGHIIIMIISFVFFGIFKLTLKMFYHLF
FT                   RCVCCNPLIRGILSIIFTILFYFLLCVCVYFIYYFFGDQISSAYNTLNQIDSSNFINST
FT                   QVEEKVRNIIHDGSLFFGTRDQATGQINEVETQVINGGTVNYTLFN"
XX
SQ   Sequence 1899 BP; 612 A; 336 C; 306 G; 645 T; 0 other;
     aagtttttag cctggaactg acacaatcct gcatgaacga gcgcaagaga atggcagacc        60
     aagagcggag aacgtttgga tcatataaaa tagaaggatt gacaattaga aacgaccaac       120
     caaatagaaa cacaaattca tcgaattctc aatccactga aaatcgtctt tcaaccaaga       180
     aaatccccct actcgacgac ggtatttttg aacttttgac ttaccttatt gatggaacca       240
     attttgataa aacttgctac tgtggtttta attactctca tcttcccaac cttgaacgtg       300
     actttaacgt tgcatcaatt tacgtccgcg aaaattttga gttgtgtact gagcatttaa       360
     atttgaaaga ttatgataga caggcaacta taagtgtgaa atctccagat tttactttgt       420
     ttctagaata tactctcaaa ccatcattag aaactgattc tcccattctt gagaaagaga       480
     acgaagaaac tgaaaaatca gctcctccta aagttacccc tcctaaagaa gagaaaagaa       540
     cagttgaaat gtcattatta cctatcttaa accgtgaatc tgaagaaaca ctaaactctg       600
     aaattcttga aggtgaagct gctgtcgtca acgtattcaa aatgtatatc aaaggctttt       660
     taatgtattt gggtgaaaat ccaaattctt atgatcgtca attaaacata gaaaagtatc       720
     gtcctctgtt gatttcaatt cttggatatg agcatctgat cggaacaaga gtcacacaca       780
     aagaagttaa ccatatcttt taccaactgg caacttttga taattaccct tttgatttac       840
     tcaggttcca actctcttca ctgatatcta caccaccttt aatccgtgag aaaatagcaa       900
     aagaaggatt attcaaaatt atcacatcta atcccctgcg tggtgcttct cgtcaaactg       960
     ccttatttcg aggaattaat ggaagcgaat catttttgaa tatgaaaaga taccgcaaat      1020
     tcagaacgcg agttgttggt aatgttgata gcgtgattaa gtctgacttt tcttccttga      1080
     aattggacgt ttgatcgttt actttttatg ttttgaaaat tgaatatcac tggttgatga      1140
     atcatttcct ttcattttat gaatccccaa tcttcagtaa atgttgatac ctatactttt      1200
     aactgtccct ttgaattagc aaaaattcaa attcaatcaa tgaaacctat tatgcaagat      1260
     tttagtaact ttgatgatat ttttgaacgt acgttatccg attctgaaat tgatgatcgt      1320
     gtagaacagc ttgaagtaga cgttgaatca aaagtagatc ccattgtgag acgaaaatac      1380
     ggtaaaattg gacatattat cattatgatt atcagttttg tattttttgg tatttttaaa      1440
     cttactctta aaatgtttta tcatttgttt cgttgtgtgt gttgcaatcc attaattaga      1500
     ggtatactta gtatcatttt tactatatta ttttactttc tactatgtgt gtgtgtttat      1560
     tttatttatt actttttcgg cgatcagatt tcatcggcgt ataatacttt aaatcaaatt      1620
     gatagttcta attttataaa ctctactcaa gttgaagaaa aagttagaaa tataattcac      1680
     gatggttcac tctttttcgg tactcgcgac caagctacag gtcaaattaa cgaagttgaa      1740
     acccaagtca taaatggtgg cacagtaaac tacacgcttt ttaattaacg tctattttat      1800
     atgactctga aaatattcac gctcgcaagt cgattctctt gtagttatgt cttttgaggt      1860
     atgacaaact cgttctcaag ccggcttaca gctatcgtc                             1899
//