Dbfetch
ID HQ394209; SV 1; linear; genomic RNA; STD; VRL; 1899 BP. XX AC HQ394209; XX DT 17-APR-2011 (Rel. 108, Created) DT 17-APR-2011 (Rel. 108, Last updated, Version 1) XX DE Rice black streaked dwarf virus isolate LJ-M segment S9, complete sequence. XX KW . XX OS Rice black streaked dwarf virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus. XX RN [1] RP 1-1899 RA Yin Y.-Y., Wang D., Dong J.-H., Zhang Z.-K.; RT "Molecular identification of maize rough dwarf disease in Lijiang (Yunnan, RT China)"; RL Unpublished. XX RN [2] RP 1-1899 RA Wang D., Dong J.-H., Zhang Z.-K.; RT ; RL Submitted (12-OCT-2010) to the INSDC. RL Institute of Biotechnology and Germplasma Resources, Yunnan Academy of RL Agricultural Sciences, Xueyun Road No. 9, Kunming, Yunnan 650223, China XX DR MD5; a6d2f5abadcbeec4fbfb1264a210fc94. XX FH Key Location/Qualifiers FH FT source 1..1899 FT /organism="Rice black streaked dwarf virus" FT /segment="S9" FT /host="maize" FT /isolate="LJ-M" FT /mol_type="genomic RNA" FT /country="China" FT /db_xref="taxon:10990" FT CDS 33..1094 FT /codon_start=1 FT /product="p9-1" FT /note="nonstructural protein" FT /db_xref="InterPro:IPR009268" FT /db_xref="UniProtKB/TrEMBL:F5A188" FT /protein_id="AEB40346.1" FT /translation="MNERKRMADQERRTFGSYKIEGLTIRNDQPNRNTNSSNSQSTENR FT LSTKKIPLLDDGIFELLTYLIDGTNFDKTCYCGFNYSHLPNLERDFNVASIYVRENFEL FT CTEHLNLKDYDRQATISVKSPDFTLFLEYTLKPSLETDSPILEKENEETEKSAPPKVTP FT PKEEKRTVEMSLLPILNRESEETLNSEILEGEAAVVNVFKMYIKGFLMYLGENPNSYDR FT QLNIEKYRPLLISILGYEHLIGTRVTHKEVNHIFYQLATFDNYPFDLLRFQLSSLISTP FT PLIREKIAKEGLFKIITSNPLRGASRQTALFRGINGSESFLNMKRYRKFRTRVVGNVDS FT VIKSDFSSLKLDV" FT CDS 1159..1788 FT /codon_start=1 FT /product="p9-2" FT /note="nonstructural protein" FT /db_xref="GOA:F5A189" FT /db_xref="InterPro:IPR009650" FT /db_xref="UniProtKB/TrEMBL:F5A189" FT /protein_id="AEB40347.1" FT /translation="MNPQSSVNVDTYTFNCPFELAKIQIQSMKPIMQDFSNFDDIFERT FT LSDSEIDDRVEQLEVDVESKVDPIVRRKYGKIGHIIIMIISFVFFGIFKLTLKMFYHLF FT RCVCCNPLIRGILSIIFTILFYFLLCVCVYFIYYFFGDQISSAYNTLNQIDSSNFINST FT QVEEKVRNIIHDGSLFFGTRDQATGQINEVETQVINGGTVNYTLFN" XX SQ Sequence 1899 BP; 612 A; 336 C; 306 G; 645 T; 0 other; aagtttttag cctggaactg acacaatcct gcatgaacga gcgcaagaga atggcagacc 60 aagagcggag aacgtttgga tcatataaaa tagaaggatt gacaattaga aacgaccaac 120 caaatagaaa cacaaattca tcgaattctc aatccactga aaatcgtctt tcaaccaaga 180 aaatccccct actcgacgac ggtatttttg aacttttgac ttaccttatt gatggaacca 240 attttgataa aacttgctac tgtggtttta attactctca tcttcccaac cttgaacgtg 300 actttaacgt tgcatcaatt tacgtccgcg aaaattttga gttgtgtact gagcatttaa 360 atttgaaaga ttatgataga caggcaacta taagtgtgaa atctccagat tttactttgt 420 ttctagaata tactctcaaa ccatcattag aaactgattc tcccattctt gagaaagaga 480 acgaagaaac tgaaaaatca gctcctccta aagttacccc tcctaaagaa gagaaaagaa 540 cagttgaaat gtcattatta cctatcttaa accgtgaatc tgaagaaaca ctaaactctg 600 aaattcttga aggtgaagct gctgtcgtca acgtattcaa aatgtatatc aaaggctttt 660 taatgtattt gggtgaaaat ccaaattctt atgatcgtca attaaacata gaaaagtatc 720 gtcctctgtt gatttcaatt cttggatatg agcatctgat cggaacaaga gtcacacaca 780 aagaagttaa ccatatcttt taccaactgg caacttttga taattaccct tttgatttac 840 tcaggttcca actctcttca ctgatatcta caccaccttt aatccgtgag aaaatagcaa 900 aagaaggatt attcaaaatt atcacatcta atcccctgcg tggtgcttct cgtcaaactg 960 ccttatttcg aggaattaat ggaagcgaat catttttgaa tatgaaaaga taccgcaaat 1020 tcagaacgcg agttgttggt aatgttgata gcgtgattaa gtctgacttt tcttccttga 1080 aattggacgt ttgatcgttt actttttatg ttttgaaaat tgaatatcac tggttgatga 1140 atcatttcct ttcattttat gaatccccaa tcttcagtaa atgttgatac ctatactttt 1200 aactgtccct ttgaattagc aaaaattcaa attcaatcaa tgaaacctat tatgcaagat 1260 tttagtaact ttgatgatat ttttgaacgt acgttatccg attctgaaat tgatgatcgt 1320 gtagaacagc ttgaagtaga cgttgaatca aaagtagatc ccattgtgag acgaaaatac 1380 ggtaaaattg gacatattat cattatgatt atcagttttg tattttttgg tatttttaaa 1440 cttactctta aaatgtttta tcatttgttt cgttgtgtgt gttgcaatcc attaattaga 1500 ggtatactta gtatcatttt tactatatta ttttactttc tactatgtgt gtgtgtttat 1560 tttatttatt actttttcgg cgatcagatt tcatcggcgt ataatacttt aaatcaaatt 1620 gatagttcta attttataaa ctctactcaa gttgaagaaa aagttagaaa tataattcac 1680 gatggttcac tctttttcgg tactcgcgac caagctacag gtcaaattaa cgaagttgaa 1740 acccaagtca taaatggtgg cacagtaaac tacacgcttt ttaattaacg tctattttat 1800 atgactctga aaatattcac gctcgcaagt cgattctctt gtagttatgt cttttgaggt 1860 atgacaaact cgttctcaag ccggcttaca gctatcgtc 1899 //