ID HQ393453; SV 1; circular; genomic DNA; STD; VRL; 2829 BP. XX AC HQ393453; XX DT 27-MAR-2011 (Rel. 108, Created) DT 14-NOV-2012 (Rel. 114, Last updated, Version 4) XX DE Sweet potato leaf curl virus isolate SPLCV-US[BR:OPO:08], complete genome. XX KW . XX OS Sweet potato leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2829 RX PUBMED; 23082767. RA Albuquerque L.C., Inoue-Nagata A.K., Pinheiro B., Resende R.O., RA Moriones E., Navas-Castillo J.; RT "Genetic diversity and recombination analysis of sweepoviruses from RT Brazil"; RL Virol J 9:241-241(2012). XX RN [2] RP 1-2829 RA Albuquerque L.C., Inoue-Nagata A.K., Pinheiro B., Resende R.O., RA Ribeiro S.G., Moriones E., Navas-Castillo J.; RT "Genetic diversity by extensive recombination in the complex of monopartite RT begomoviruses infecting sweet potato in Brazil"; RL Unpublished. XX RN [3] RP 1-2829 RA Albuquerque L.C., Inoue-Nagata A.K., Pinheiro B., Resende R.O., RA Ribeiro S.G., Navas-Castillo J.; RT ; RL Submitted (11-OCT-2010) to the INSDC. RL Virology, Embrapa Vegetables, Km 09, BR060, Brasilia, DF 70359-970, Brazil XX DR MD5; 1aed8f95a7c2863377d09c3407603d2c. DR EuropePMC; PMC3485178; 23082767. XX FH Key Location/Qualifiers FH FT source 1..2829 FT /organism="Sweet potato leaf curl virus" FT /host="Ipomoea batatas" FT /strain="USA" FT /isolate="SPLCV-US[BR:OPO:08]" FT /mol_type="genomic DNA" FT /country="Brazil:Rondonia" FT /lat_lon="11.5 S 63.1 W" FT /collected_by="Joao Bosco Silva" FT /collection_date="2008" FT /clone="337Eco1" FT /db_xref="taxon:100755" FT CDS 126..470 FT /codon_start=1 FT /product="V2" FT /db_xref="GOA:J9PEW1" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:J9PEW1" FT /protein_id="ADZ96537.1" FT /translation="MEQLWDPLQNPLPDTLYGFRCMLSVKYLQSILKKYEPGTLGFELC FT SELIRICRVRQYDRANSRFAEISSIWGETGKTEAELRDSYRALHWECCPNCCPKLCPGF FT KRRPDEEKEG" FT CDS 295..1059 FT /codon_start=1 FT /product="V1" FT /note="CP" FT /db_xref="GOA:D4HSB4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D4HSB4" FT /protein_id="ADZ96538.1" FT /translation="MTGRIPVSRRFHPYGGRPVRRRLNFETAIVPYTGNAVPIAARSYV FT PVSRGVRMKRRRGDRIPKGCVGPCKVQDYEFKMDVPHTGTFVCVSDFTRGTGLTHRLGK FT RVCVKSMGIDGKVWMDDNVAKRDHTNIITYWLIRDRRPNKDPLNFGQIFTTYDNEPTTA FT KIRMDLRDRMQVLKKFSVTVSGGPYSHKEQALIRKFFKGLYNHVTYNHKEEAKYENQLE FT NALMLYSASSHASNPVYQTLRCRAYFYDSHNN" FT CDS complement(1075..1509) FT /codon_start=1 FT /product="C3" FT /note="REn" FT /db_xref="GOA:J7EPX8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:J7EPX8" FT /protein_id="ADZ96539.1" FT /translation="MDSRTGESLSHAQTTRALEFDTNPMSVGRTAPFHLRIMYVHESTQ FT GRTILKFQMRVNYRERRQLGFHKIFLQFRILTTRLTGAIHSWTGILERLKWRICNGLAN FT IGFISLVNLVFVVRYLPRVCSWIDEVDTVDCNDDVKILLY" FT CDS complement(1226..1672) FT /codon_start=1 FT /product="C2" FT /note="Trap" FT /db_xref="GOA:J7EPK0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:J7EPK0" FT /protein_id="ADZ96540.1" FT /translation="MSNLPSGLKRKCPIQEPLHAEAKKVKRKVPETRTRIVWKGCGCSA FT FITTTCKYQHGFTHRGITKSCSDYESTRIRHQPHVCGSDCTVPSQNYVCPREHTGENHP FT QIPNEGQLQGKEATGIPQDLPPIQDLDDPTNWCYSQLDWYFGTP" FT CDS complement(1581..2675) FT /codon_start=1 FT /product="C1" FT /note="Rep" FT /db_xref="GOA:J7EM26" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:J7EM26" FT /protein_id="ADZ96541.1" FT /translation="MAPPKRFRISSKNYFITYPRCSLSKEDCLAQLLHIQTPTNKKYIH FT IAKELHEDGEPHLHVLVQFEGKFVCTNSRFFDLVSPTRSNHFHPNIQGAKSSSDVKSYV FT DKDGDTLTWGEFQVDGRSARGGQQTANDAAAEALNAGSKEAALQIIREKLPEKYLFQYH FT NLVSNLDRIFSPPPSVYSSPFSSSSFNAVPDIISDWAAENVMDSAARPDRPISIVIEGP FT SRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDW FT QSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKLWLDKPEQEALKNWATANAIFCDVQSPF FT WTQEEVSHSGATARRGEEGQEESS" FT CDS complement(2261..2518) FT /codon_start=1 FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:F2X5F5" FT /protein_id="ADZ96542.1" FT /translation="MGNLTSMCWCSSKVNSSAQIADSSTLSHPQGRITFTPTSRELNPR FT PMSSPTLIRTGIPSPGVNSRSTADLLEEVSRLLTTQPQRL" XX SQ Sequence 2829 BP; 728 A; 598 C; 694 G; 809 T; 0 other; accggtgccc gccgcgcctt tttaaagtgg gccccacaat gggaccacgc gtctttgccg 60 tactgtcttt aatgattaca ttgctttata aggaccaatc aggtttccgt gcttgggcgc 120 caagaatgga gcagttgtgg gaccctttgc agaacccact cccggatact ttatacggtt 180 ttaggtgtat gctatccgta aaatacttgc agagtatttt gaagaaatac gagccaggaa 240 ccttagggtt cgagctctgt tcggagttaa tccgtatatg cagggtcagg cagtatgaca 300 gggcgaattc ccgtttcgcg gagatttcat ccatatgggg ggagaccggt aagacggagg 360 ctgaacttcg agacagctat cgtgccctac actgggaatg ctgtcccaat tgctgcccga 420 agctatgtcc cggtttcaag aggcgtccgg atgaagagaa ggaggggtga ccgcatcccg 480 aagggatgtg tcggtccctg taaggtccag gactatgagt tcaagatgga cgttccccac 540 acgggaacgt ttgtctgtgt ctcggatttt actaggggaa ctgggcttac ccatcgcctg 600 ggtaagcgtg tttgtgtgaa gtccatgggt atagatggta aggtctggat ggatgacaat 660 gtggccaaga gagatcacac caatatcatc acgtattggc tgattcgtga caggaggccc 720 aataaggatc cgcttaactt tggccagatc ttcacgacgt acgacaatga gcccactact 780 gctaagatcc gaatggatct gagagataga atgcaggtct tgaagaagtt ctcggttaca 840 gtttcaggag gtccatacag ccacaaggag caggccttaa ttaggaagtt ttttaagggt 900 ttgtataatc atgttactta caatcacaag gaagaagcta agtatgagaa tcaattagag 960 aatgcactta tgttgtatag tgctagtagt catgctagta atcccgtgta tcagaccctg 1020 cgttgcaggg cttatttcta tgattcgcac aataattaat aaaattatat tttattaata 1080 gagtaatatc tttacatcat cattacaatc taccgtatct acttcatcta tccaagaaca 1140 tactcttgga agatatctaa caacaaaaac taaattaact agactaataa accctatatt 1200 tgctaatcca ttacatatgc gccatttaag gcgttccaaa ataccagtcc aactgtgaat 1260 agcaccagtt agtcgggtcg tcaagatcct gaattggagg aagatcttgt ggaatcccag 1320 ttgcctcctt tccctgtagt tgaccctcat ttggaatttg aggatggttc tcccctgtgt 1380 gctctcgtgg acatacataa ttctgagatg gaacggtgca gtccgaccca cagacatggg 1440 gttggtgtcg aattctagtg ctctcgtagt ctgagcatga cttagtgatt cccctgtgcg 1500 tgaatccatg ctggtacttg caggttgtgg tgatgaaggc tgaacagccg caacccttcc 1560 acactatcct cgtccttgtt tcaggaactt tcctcttgac cttcttcgcc tctgcgtgca 1620 gtggctcctg aatgggacac ttcctcttga gtccagaagg gagattggac atcgcagaat 1680 atagcgtttg ctgttgccca attcttgagt gcttcttgct ctggcttgtc cagccagagt 1740 ttaaatgaag agccttctcc tggattgcag aggaagatag tgggtattcc gcctttaatt 1800 tgaactggct ttccgtattt acagttggat tgccagtcct tctgggcccc catgaattct 1860 ttaaagtgct ttaggtattg ggggttgacg tcatcaatga cgttatacca agcactgttg 1920 ctgtacactt ttgggctaag atctaaatgc ccacacaaat aattgtgagg gcccaaagac 1980 ctggcccata ctgttttgcc tattctgctt gggccttcaa taacaatgga tatgggtcta 2040 tccggccgcg cagcggaatc catgacattt tcagcggccc agtcgctgat aatgtcagga 2100 acggcattga aagaagatga agaaaaaggg gaagaatata cagaaggtgg aggagaaaaa 2160 atcctatcta aattagaaac taaattatga tattgaaata aatatttttc agggagtttc 2220 tccctaatta tttgcaacgc agcttcttta gaacctgcgt ttagagcctc tgcggctgcg 2280 tcgttagcag tctgctgacc tcctctagca gatctgccgt cgacctggaa ttcaccccag 2340 gtgagggtat ccccgtcctt atcaacgtag gacttgacat cggacgagga tttagctccc 2400 tggatgttgg ggtgaaagtg attcgacctt gtgggtgaga caaggtcgaa gaatctgcta 2460 tttgtgcaga cgaatttacc ttcgaactgc accagcacat ggaggtgagg ttccccatcc 2520 tcgtgcagtt ctttggctat gtgtatgtat tttttgttgg ttggggtttg gatgtgtagt 2580 agttgggcta ggcagtcctc tttagagaga gaacagcgtg gataagtaat gaaatagttt 2640 tttgaagaaa ttctaaaacg tttgggcgga gccatttggt gacactcaga ctttcaaatg 2700 aattggtgac tggtgacaat ttatactatg tcaccaaatg gcattttggt aatttagaag 2760 atccttttag ctttaattca aattccgaca actctgggtc cacctaaagg cgggcaccgt 2820 attaatatt 2829 //