ID HQ393449; SV 1; circular; genomic DNA; STD; VRL; 2828 BP. XX AC HQ393449; XX DT 27-MAR-2011 (Rel. 108, Created) DT 14-NOV-2012 (Rel. 114, Last updated, Version 4) XX DE Sweet potato leaf curl virus isolate SPLCV-PR[BR:Ria:08], complete genome. XX KW . XX OS Sweet potato leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2828 RX PUBMED; 23082767. RA Albuquerque L.C., Inoue-Nagata A.K., Pinheiro B., Resende R.O., RA Moriones E., Navas-Castillo J.; RT "Genetic diversity and recombination analysis of sweepoviruses from RT Brazil"; RL Virol J 9:241-241(2012). XX RN [2] RP 1-2828 RA Albuquerque L.C., Inoue-Nagata A.K., Pinheiro B., Resende R.O., RA Ribeiro S.G., Moriones E., Navas-Castillo J.; RT "Genetic diversity by extensive recombination in the complex of monopartite RT begomoviruses infecting sweet potato in Brazil"; RL Unpublished. XX RN [3] RP 1-2828 RA Albuquerque L.C., Inoue-Nagata A.K., Pinheiro B., Resende R.O., RA Ribeiro S.G., Navas-Castillo J.; RT ; RL Submitted (11-OCT-2010) to the INSDC. RL Virology, Embrapa Vegetables, Km 09, BR060, Brasilia, DF 70359-970, Brazil XX DR MD5; 3a2fc87a96f9e597ed6e83cedb317335. XX FH Key Location/Qualifiers FH FT source 1..2828 FT /organism="Sweet potato leaf curl virus" FT /host="Ipomoea batatas" FT /strain="Puerto Rico" FT /isolate="SPLCV-PR[BR:Ria:08]" FT /mol_type="genomic DNA" FT /country="Brazil:Sergipe" FT /lat_lon="7.21 S 46.37 W" FT /collected_by="Joao Bosco Silva" FT /collection_date="2008" FT /clone="235Bam2" FT /db_xref="taxon:100755" FT CDS 98..469 FT /codon_start=1 FT /product="V2" FT /db_xref="GOA:J9PED1" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:J9PED1" FT /protein_id="ADZ96513.1" FT /translation="MLFQSWSPSMAELWDPLQNPLPETLYGLRCMLSVKYLQSILKKYE FT PGTLGFELCSEIIRIFRVRQYDRANARYAEISSVWGDSGKTEAELRDRYRALHWECCPN FT CCPKLCPGFKKRPDEEKEG" FT CDS 294..1058 FT /codon_start=1 FT /product="V1" FT /note="CP" FT /db_xref="GOA:J9PE83" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:J9PE83" FT /protein_id="ADZ96514.1" FT /translation="MTGRMRVTRRFHPYGGTPVRRRLNFETAIVPYTGNAVPIAARSYV FT PVSRSVRMKRKRGDRIPKGCVGPCKVQDYEFKMDVPHSGTFVCVSDFTRGTGLTHRLGK FT RVCIKSMGIDGKVWMDDNVAKRDHTNIITYWLIRDRRPNKDPLTFFQAFTMYDNEPTTA FT KIRMDLRDRMQVLKKFSVTVSGGPYNHKEQALVRKFFKSLYNHVTYNHKDEAKYENHLE FT NALMLYSASSHASNPVYQTLRCRAYFYDSHNN" FT CDS complement(1074..1508) FT /codon_start=1 FT /product="C3" FT /note="REn" FT /db_xref="GOA:J9PEN3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:J9PEN3" FT /protein_id="ADZ96515.1" FT /translation="MDSRTGESLSHAQTMRALEFDNNPMSAGRTAPFNLRIMYVHESTQ FT GRTILKFQMRVNYRERRQLGFHKIFLQFRILTTRLTGAIHSWTGILERLKWRICNGLAN FT IGFISLVNLVFVIRNLPRVCSWVDEVDTVDCNDDVKILLY" FT CDS complement(1225..1671) FT /codon_start=1 FT /product="C2" FT /note="Trap" FT /db_xref="GOA:J9PEV8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:J9PEV8" FT /protein_id="ADZ96516.1" FT /translation="MSNLPSGLKRKCPIQEPLHAEAKKVKRKVPETRTRIVWKGCGCSA FT FITTSCKYQHGFTHRGITKSCSDYESTRIRQQPHVCGSDCPIQSPNNVCPREHTGENHP FT QIPNEGQLQGKEATGIPQDLPPIQDLDDPTNWCYSQLDWYFGTP" FT CDS complement(1580..2674) FT /codon_start=1 FT /product="C1" FT /note="Rep" FT /db_xref="GOA:J9PEI2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:J9PEI2" FT /protein_id="ADZ96517.1" FT /translation="MATPKRFRISSKNYFITYPRCSLSKEDCLAQLLHIQTPTNKKYIH FT IAKELHEDGEPHLHVLVQFEGKFVCTNSRFFDLVSPTRSNHFHPNIQGAKSSSDVKSYV FT DKDGDTLTWGEFQVDGRSARGGQQTANDAAAEALNAGSKEAALQIIREKLPEKYLFQYH FT NLVSNLDRIFSPPPSVYSSPFSSSSFNAVPDIISDWAAENVMDSAARPDRPISIVIEGP FT SRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDW FT QSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKLWLDKPEQGALKNWATANAIFCDVQSPF FT WTQEEVSHSGATARRGEEGQEESS" FT CDS complement(2260..2517) FT /codon_start=1 FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:F2X5F5" FT /protein_id="ADZ96518.1" FT /translation="MGNLTSMCWCSSKVNSSAQIADSSTLSHPQGRITFTPTSRELNPR FT PMSSPTLIRTGIPSPGVNSRSTADLLEEVSRLLTTQPQRL" XX SQ Sequence 2828 BP; 732 A; 588 C; 675 G; 833 T; 0 other; accggtgccc gccgcgccct ctaaaagtgg gccccactta gagccaacgc gtcttttccg 60 tactctcttt aatgatgaca ttgctttata aggaccaatg ctgttccagt cttggtcgcc 120 aagtatggct gaattgtggg accctttgca gaaccctcta ccagaaactt tatacggttt 180 acggtgtatg ctttctgtta aatacttgca gagtattttg aaaaaatacg agccaggaac 240 cctagggttc gagctgtgct ccgaaataat ccgcatcttc agggtcaggc agtatgacag 300 ggcgaatgcg cgttacgcgg agatttcatc cgtatggggg gactccggta agacggaggc 360 tgaacttcga gaccgctatc gtgccttaca ctgggaatgc tgtcccaatt gctgcccgaa 420 gctatgtccc ggtttcaaga agcgtccgga tgaagagaaa gaggggtgac cgaatcccga 480 aaggatgtgt tggtccctgt aaggtacagg actatgagtt caagatggat gtcccacata 540 gtgggacctt tgtttgtgta tctgatttta caagggggac tggtcttacc catcgtttgg 600 gtaagagggt gtgtattaag tccatgggta ttgatggtaa ggtttggatg gatgacaacg 660 tcgccaagag ggaccacacc aacatcatta cttactggtt gatccgagat aggaggccca 720 ataaggatcc attgacgttt ttccaggcgt ttacaatgta tgataacgag cccactactg 780 ctaagatccg aatggatctg agagatagaa tgcaggtgtt gaagaaattt tctgttacag 840 tttctggtgg tccttataac cacaaggagc aggcattagt tcggaagttc tttaagagtt 900 tgtataatca tgttacttat aatcataagg atgaagctaa gtatgagaat catttagaga 960 atgcattaat gttgtattct gctagcagtc atgctagcaa tcctgtgtat cagaccctgc 1020 gttgcagggc ttatttctat gattcacata ataattaata aaaatttatt ttattaatac 1080 agtaatatct ttacatcatc attacaatct accgtatcta cttcatctac ccaagaacat 1140 actcttggta gattcctaat aacaaaaact aaattaacta gactaataaa ccctatattt 1200 gctaatccat tacatatgcg ccatttaagg cgttccaaaa taccagtcca actgtgaata 1260 gcaccagtta gtcgggtcgt caagatcctg aattggagga agatcttgtg gaatcccagt 1320 tgcctccttt ccctgtagtt gaccctcatt tggaatttga ggatggttct cccctgtgtg 1380 ctctcgtgga catacattat tcggagattg aatggggcag tccgacccgc agacatgggg 1440 ttgttgtcga attcgagtgc tctcatagtc tgagcatgac ttagtgattc ccctgtgcgt 1500 gaatccatgc tggtacttgc aggatgtggt tatgaaggct gaacatccgc aacccttcca 1560 cactatcctc gtccttgttt caggaacttt cctcttgacc ttcttcgcct ctgcgtgcag 1620 tggctcctga atgggacact tcctcttgag tccagaaggg agattggaca tcgcagaata 1680 tagcgtttgc tgttgcccaa ttcttgagtg ctccttgttc tggtttgtct agccagagtt 1740 taaatgagga accctctcct ggattgcaga ggaagatagt gggaattccg cctttaattt 1800 gaactggctt tccgtattta cagttggatt gccagtcctt ctgggccccc atgaattctt 1860 taaagtgctt taggtattgg gggttgacgt catcaatgac gttataccaa gcactgttgc 1920 tgtaaacttt tgggctaaga tctaaatgcc cacacaaata attgtgaggg cccaaagacc 1980 tggcccatac tgttttgcct attctgcttg ggccttcaat aacaatggat atgggtctat 2040 ccggccgcgc agcggaatcc atgacatttt cagcggccca gtcgctgata atgtcaggaa 2100 cggcattgaa agaagatgaa gaaaaaggtg aagaatatac agaaggtgga ggagaaaaaa 2160 tcctatctaa attagaaact agattatgat attgaaataa atatttttca gggagcttct 2220 ccctaattat ttgcaacgca gcttctttag aacctgcgtt tagagcctct gcggctgcgt 2280 cgttagcagt ctgctgacct cctctagcag atctgccgtc gacctggaat tcaccccagg 2340 tgagggtatc cccgtcctta tcaacgtagg acttgacatc ggacgaggat ttagctccct 2400 ggatgttggg gtgaaagtga ttcgaccttg tgggtgagac aaggtcgaag aatctgctat 2460 ttgtgcagac gaatttacct tcgaactgca ccagcacatg gaggtgaggt tccccatcct 2520 cgtgcagttc tttggctatg tgtatgtatt ttttgttggt tggggtttgg atgtgtagta 2580 gttgggctag gcagtcctct ttagagagag aacagcgtgg ataagtaatg aaatagtttt 2640 ttgaagaaat tctaaaacgt ttgggcgtag ccatttggtg acactcagac tttcaaatga 2700 attggtgact ggtgacaatt tatactatgt caccaaatgg cattttggta atttagaaga 2760 tccttttagc tttaattcaa attccgacaa ctctgggtcc acctaaaggc gggcaccgta 2820 ttaatatt 2828 //