ID HQ389540; SV 1; linear; genomic RNA; STD; VRL; 6791 BP. XX AC HQ389540; XX DT 18-MAY-2011 (Rel. 108, Created) DT 04-APR-2012 (Rel. 112, Last updated, Version 4) XX DE Passion fruit mosaic virus, complete genome. XX KW . XX OS Passion fruit mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6791 RX DOI; 10.1007/s00705-011-0961-8. RX PUBMED; 21547441. RA Song Y.S., Ryu K.H.; RT "The complete genome sequence and genome structure of passion fruit mosaic RT virus"; RL Arch. Virol. 156(6):1093-1095(2011). XX RN [2] RP 1-6791 RA Song Y.S., Ryu K.H.; RT ; RL Submitted (10-OCT-2010) to the INSDC. RL Hoticultural Science, Seoul Women's University, Seoul 139-774, Korea XX DR MD5; c185717343455025dd1577db3838bc46. DR EuropePMC; PMC5282660; 28137291. DR RFAM; RF01072; TMV_UPD-PK3. XX FH Key Location/Qualifiers FH FT source 1..6791 FT /organism="Passion fruit mosaic virus" FT /host="Passiflora incarnata L." FT /mol_type="genomic RNA" FT /country="USA" FT /collected_by="A.A. St. Hill" FT /note="acronym: PafMV" FT /db_xref="taxon:1032457" FT 5'UTR 1..56 FT /note="5'UTR" FT CDS 57..4892 FT /codon_start=1 FT /transl_except=(pos:3357..3359,aa:Tyr) FT /product="184 kDa protein" FT /note="replicase; produced by readthrough of a leaky amber FT stop codon" FT /db_xref="GOA:F6KJM4" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:F6KJM4" FT /protein_id="AEF01559.1" FT /translation="MTTISQLQQQTKERLVSDVRGPIQDLASRRVYDDAVNSLRVLDRR FT PKINFNKLIPADACKLITESYPEFTITFTGTVCSSHGLAGGLRTLETEYLMMSVPYGLP FT TYDIGGNFSLHMMKGRAYVHCCNPCMDLRDVARNESYRDNIQAYLSKFQRREPISWTTR FT QFKGKPARALPEFQLDAFKRYDEEPNAVSCSSTFQHCSYSPPEGMDTYAVSVHSLYDIP FT VAELGPALLRKRVKTLYACMHFSEALLLGSETGTLQKIGASFVVSGTKVTFGFFDESTL FT LYVHDLSNVKEMMIRTWFVADTRFVYMKEFQARRVDTVFCKFQRVDTFRLNRTVFKNNA FT DALPDMIDDAWVRKRSTAMMSTEPIFKDAVSFNVWFPESKGKVLVPIFRGIFESGKVRK FT STAVVDEDFVYTILNHIRTYPAKQLTYENVLSFVESIRSRVIVNGCNVRSEWDVEKKIL FT PDVAMTFLLITKLRQLQDQVVLERFDFKKTTIWGRIREVFLEYFSDVSGCLFETMRSYG FT WIQVVDDKLRIITPEYHRTFTEELSLLYNRETKPEEVDVSDSLKMSNEILDVVDQLSET FT FDFMTFDTEKLNEFVKKFNVRPSVLKDVITALYNGECGVAFKDTSTPCLQGMTVETKHA FT GVLKSDEASTSNVTVEEVKKTDDQFFSFAKFNGMNVKDVLASIDSSTAKTYEGEIEVRQ FT MENYLDYLRASLSGSLSNLDKILRDYWSQSSETYKTYGVWDTRKKQWILDPPDRKHGWG FT LVLIGNESYVQCLQYDGDNAPVCAANWERVAVSNETKLFSNVQILNELMCVEKRVPDGD FT LVLVEGVPGCGKTKEILERCNFKSDLILTPGKEAAAMIRRRANNGLGAEHATTYNVRTF FT DSFLINKIPVRFDTVWVDEGLMVHTGVIQFCRLKTNCKRMYVYGDTKQIPFINRVMTFD FT YPESLRNLKLNSVETRSVTKRCPADITVFLNSQYQCHVLTENHTQRSVEATLLKGAAVL FT QPRQTTLNGKIVVFTQADKALLKKNGYIGVNTVHEVQGDTFEEVSLVRATPTPVGIIAK FT DSPHVLVALSRHTSRLHYYTVVPDYVVSKIAELKTVSNFLLDMHSFSGPSVLYQLQCKD FT IYIHNTKVFVPTPKTGSIFDLQEWYDNILPGNSTVLNDYDGTVIRLFDNELNVQQCRLT FT LSKADPVPEIIRKNSKQFLRPVLRTGCEMPRTSGMIENLLAMIKRNFNSPELTGDVDID FT VLSSSVVDRFFDVYVSVDLRTKFNSYSTLGCVDNLYISSHENFSDWLSKQQPDVVGQLA FT NYDFIGIPPVDEYKHMIKKQPKLKGDCSIQSEYPALQTIVYHSKKINAIFGPIFKELTR FT RLIECFDSQRFMLYTRKTPADIEEFFNSVTGKNEMDILELDVSKYDKSQDDFHFTLEMK FT IWERLGLDDYIKVLWQNGHKRTILSDYTAGIKTVLYYQRKSGDVTTFIGNTVIIAACVC FT NILPIEKCIKASFCGDDSLVLMPKGLDYSEVQQKANLVWNFEAKLFMKKRHAYFCGKYV FT VFHDNGAVVFPDPLKLIGKLGSKNIQSWDHCEDFRRSLCDVATNFGNCAYFSLLDEAVQ FT ENYKSAGSGCYAYRALWRFLTNPHLFQTLYFN" FT CDS 57..3359 FT /codon_start=1 FT /product="125 kDa protein" FT /note="replicase" FT /db_xref="GOA:F6KJM5" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:F6KJM5" FT /protein_id="AEF01558.1" FT /translation="MTTISQLQQQTKERLVSDVRGPIQDLASRRVYDDAVNSLRVLDRR FT PKINFNKLIPADACKLITESYPEFTITFTGTVCSSHGLAGGLRTLETEYLMMSVPYGLP FT TYDIGGNFSLHMMKGRAYVHCCNPCMDLRDVARNESYRDNIQAYLSKFQRREPISWTTR FT QFKGKPARALPEFQLDAFKRYDEEPNAVSCSSTFQHCSYSPPEGMDTYAVSVHSLYDIP FT VAELGPALLRKRVKTLYACMHFSEALLLGSETGTLQKIGASFVVSGTKVTFGFFDESTL FT LYVHDLSNVKEMMIRTWFVADTRFVYMKEFQARRVDTVFCKFQRVDTFRLNRTVFKNNA FT DALPDMIDDAWVRKRSTAMMSTEPIFKDAVSFNVWFPESKGKVLVPIFRGIFESGKVRK FT STAVVDEDFVYTILNHIRTYPAKQLTYENVLSFVESIRSRVIVNGCNVRSEWDVEKKIL FT PDVAMTFLLITKLRQLQDQVVLERFDFKKTTIWGRIREVFLEYFSDVSGCLFETMRSYG FT WIQVVDDKLRIITPEYHRTFTEELSLLYNRETKPEEVDVSDSLKMSNEILDVVDQLSET FT FDFMTFDTEKLNEFVKKFNVRPSVLKDVITALYNGECGVAFKDTSTPCLQGMTVETKHA FT GVLKSDEASTSNVTVEEVKKTDDQFFSFAKFNGMNVKDVLASIDSSTAKTYEGEIEVRQ FT MENYLDYLRASLSGSLSNLDKILRDYWSQSSETYKTYGVWDTRKKQWILDPPDRKHGWG FT LVLIGNESYVQCLQYDGDNAPVCAANWERVAVSNETKLFSNVQILNELMCVEKRVPDGD FT LVLVEGVPGCGKTKEILERCNFKSDLILTPGKEAAAMIRRRANNGLGAEHATTYNVRTF FT DSFLINKIPVRFDTVWVDEGLMVHTGVIQFCRLKTNCKRMYVYGDTKQIPFINRVMTFD FT YPESLRNLKLNSVETRSVTKRCPADITVFLNSQYQCHVLTENHTQRSVEATLLKGAAVL FT QPRQTTLNGKIVVFTQADKALLKKNGYIGVNTVHEVQGDTFEEVSLVRATPTPVGIIAK FT DSPHVLVALSRHTSRLHYYTVVPDYVVSKIAELKTVSNFLLDMHSFSGPSVL" FT CDS 5266..6198 FT /codon_start=1 FT /product="movement protein" FT /note="MP" FT /db_xref="GOA:F6KJM6" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:F6KJM6" FT /protein_id="AEF01560.1" FT /translation="MSLRAQNAQDVVPPLDYLNPSNFVKTQLLGLERLGLVKSPKKMCA FT LMETDVVKISPRERTVFPLRLTEKIKDLGNYKYVMFLACVVSGRWHVPTTVKGEVFLSL FT MDRRLTNERESVILTANAKPSVSEFQIRIHPRYSMVSSDAMQEPLELFVHVKGLQMAEG FT FSPLSLEIAFCVVCCDVVIAKSLKMKILQNTDKFGNAEGEVGSEGLDDLLSGSNMPSIR FT TSAFNSRRSVNANPKRVFKGKKGNVWSEAKDFAGVRRKKGVVESDMLTSNAESTVSNYS FT TDQSDALSTGFSTDTSMAVGQLGRLQDTS" FT CDS 6122..6613 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:F6KJM7" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:F6KJM7" FT /protein_id="AEF01561.1" FT /translation="MPYQPVSLQTLPWLSANWADYKTLLSVLRATSATSFQTQAGRDSI FT RSQLAGCVSELVQVNVRFPERYLVYVNDPSISDVWGALLKATDTKNRIIEVDNERNPSN FT NEIESVTRRVDDASVAIRINVERLLKLLGEVHGVYDRALFEQVSGLRWADDSAPASTSK FT " FT 3'UTR 6614..6791 FT /note="3'UTR" XX SQ Sequence 6791 BP; 1847 A; 1329 C; 1731 G; 1884 T; 0 other; gaattaattt tccaacaata caattacaat tacattgaca ggaaaataca attacaatga 60 caacaatttc acaactacaa caacaaacaa aagagaggct cgtctctgat gtcaggggtc 120 ctatacagga tctggcatcg agaagagtct acgatgacgc ggtcaattca ctacgtgtgc 180 ttgaccgccg tccaaaaatc aacttcaaca agttgattcc agcagatgcg tgtaagctca 240 taacggagtc ttaccccgag ttcacaatta ccttcacagg caccgtttgc tcctcgcacg 300 ggttggcggg gggtctacgc actttagaga ctgaatatct catgatgtca gtcccgtacg 360 gtcttcccac ttatgacatt ggtggaaatt tttcacttca tatgatgaag ggaagggcgt 420 acgttcattg ctgcaaccca tgcatggatt tgagagatgt cgctcgaaat gaatcatatc 480 gcgacaacat tcaggcttat ttatcgaagt tccagcgccg ggagcctata tcttggacca 540 ctcggcagtt caaaggtaag cctgccagag ctctacctga gtttcagtta gacgctttca 600 aaaggtacga tgaagaaccc aatgctgtct cgtgttcatc gacctttcag cattgttctt 660 actcgccacc tgaaggcatg gatacttacg ctgtttctgt ccactcactg tacgacatac 720 cggtggcgga gcttggacca gcattgctga ggaaaagggt taaaacgctc tatgcgtgca 780 tgcacttttc tgaagcgttg ttgctaggtt cggaaaccgg tacgcttcaa aagattggtg 840 cttcgtttgt ggtcagtggg accaaagtca cattcgggtt ttttgatgag tctaccttgt 900 tgtacgttca tgatctctcg aacgtaaagg agatgatgat caggacgtgg ttcgttgctg 960 acacacggtt cgtttacatg aaggagtttc aagctcgacg tgtggacact gtgttctgta 1020 agttccaacg tgttgatact ttcagactca ataggaccgt ttttaaaaat aacgctgacg 1080 ctctccctga tatgattgat gatgcatggg tgcgcaagcg ttctacggcg atgatgtcga 1140 ctgagccgat ttttaaagac gcggtgtcct tcaacgtgtg gtttccagag agtaaaggga 1200 aggtactcgt tccgattttc aggggtatct tcgaatcagg gaaggttcgg aagtcgaccg 1260 ctgtggtcga cgaagatttc gtctacacga tactcaatca tatcagaact taccccgcga 1320 aacaattgac ttacgagaac gtactatcct ttgtggagag tattcgctcg agagttattg 1380 tcaacgggtg taatgtcaga tcagaatggg atgtggagaa gaaaattttg ccagatgtgg 1440 ccatgacatt cttgctgata acgaaattac ggcagcttca agatcaggtc gtactcgaaa 1500 ggttcgattt caagaagact acaatatggg gcaggattcg tgaagtgttt cttgagtatt 1560 tcagtgatgt gtccggctgt ctattcgaga caatgagatc ctacggttgg atccaggtcg 1620 tcgatgacaa attacggata attacccctg aataccacag aacattcacg gaggaactgt 1680 ctttactgta caatcgagaa acaaagcccg aagaggttga cgtatctgat tctttgaaga 1740 tgtcgaatga gatcctcgat gtcgtggacc agctgagtga aacgttcgac ttcatgacgt 1800 tcgacacaga gaaattaaac gagttcgtga agaagttcaa tgtaagacct tctgtgctta 1860 aagatgtgat cactgccctg tacaacgggg agtgcggcgt ggccttcaag gacacatcca 1920 ctccttgctt gcagggtatg actgtggaaa ccaaacatgc tggggtattg aagtctgatg 1980 aggctagtac atctaacgtg accgtggaag aggtgaagaa gactgacgat cagttcttct 2040 ccttcgccaa attcaacggg atgaacgtta aagatgtctt agcttcaatc gatagctcca 2100 ccgcgaagac ttacgaggga gagattgagg tgcgacaaat ggagaattat ctggattact 2160 taagggcttc gctttcgggt tccttgagta acctcgataa gatattgcgt gactactggt 2220 cacaatcaag cgaaacgtac aagacttacg gtgtttggga cacacgtaag aaacagtgga 2280 ttcttgaccc acccgacaga aaacatgggt ggggtttggt gctgattggg aatgagagct 2340 atgtgcaatg cttacagtac gacggtgaca acgctccagt ttgcgctgca aactgggaac 2400 gcgtagccgt cagtaacgaa accaaactct tttcaaacgt gcagatactc aatgagttaa 2460 tgtgcgtgga gaaaagagtt ccggacgggg acttggtgct agtggaagga gtgcctggtt 2520 gcgggaagac aaaggaaatc cttgagaggt gcaattttaa atctgattta attttaacac 2580 ctggaaagga agcggctgcg atgattcgtc ggagggcgaa caatggttta ggtgctgagc 2640 acgctacgac ttataacgtc aggacgttcg attcgttcct catcaacaag ataccagtac 2700 ggtttgatac cgtctgggtt gatgaggggt tgatggtcca tactggtgtt atacagttct 2760 gtcgtttgaa aacgaattgc aaaagaatgt atgtctacgg cgatacaaag caaattccgt 2820 ttatcaatag agtgatgact tttgattacc ctgagtcact caggaatctg aagttaaatt 2880 ctgtcgagac acggagcgtg acaaaaagat gtcctgctga cattacagtc tttctcaatt 2940 cacagtacca gtgccatgtg cttacagaga accacacaca acggtccgtg gaggcgactt 3000 tactgaaggg tgcggcggta ttgcaaccgc ggcagacaac acttaatggt aagatcgttg 3060 tgttcacaca agctgacaag gctctgctga agaagaacgg gtacattggt gtcaatactg 3120 tacatgaggt acaaggtgac acatttgaag aggtttcgct ggttcgcgct acaccgacac 3180 ctgtcggtat tatcgcgaaa gattcacctc acgtcttagt ggctctatcg agacacacaa 3240 gtcggttgca ctattacaca gtagtgcctg actatgttgt gtcaaagatt gcggaactca 3300 agactgtgag caactttttg ttagatatgc atagttttag cggtcctagt gtgttatagc 3360 aattacagtg taaagacatt tatattcaca acaccaaagt ttttgttccc acaccgaaga 3420 caggttctat ttttgatttg caagaatggt acgataacat actgccgggt aattcgactg 3480 tgctcaacga ttatgatggc actgtgatac gtttgttcga taacgaattg aacgtccaac 3540 agtgccgatt aacgttgagc aaggcggatc ctgttcctga gataatcagg aaaaattcaa 3600 agcagtttct gcgaccggtt ttaagaacag gttgcgaaat gcctcgaacg agcggtatga 3660 ttgagaatct tcttgcgatg attaaaagga acttcaattc accggaacta acgggtgatg 3720 tggatataga tgttctgtcg tccagtgttg tagataggtt ttttgatgtt tatgtcagtg 3780 tggatttacg tactaagttt aatagttatt ctactttagg gtgtgttgat aatctgtaca 3840 tatcgtccca cgagaatttt agcgactggt taagcaaaca acaaccagat gtagtcggtc 3900 agctggcgaa ttacgatttc atcgggattc caccggttga tgaatacaag cacatgatca 3960 aaaagcagcc gaaactcaaa ggcgactgtt ccatacagtc tgaatatccg gcgctgcaaa 4020 cgattgtgta ccattcgaag aagataaacg ctatttttgg tccaatcttc aaggaactca 4080 cacgaagact tattgaatgc ttcgactcac aaagattcat gctgtacact cggaaaaccc 4140 cagccgacat tgaagaattt ttcaattcgg tcacgggaaa aaacgagatg gacatcctgg 4200 agctcgatgt gagcaagtat gataaaagtc aggacgattt ccatttcacc ttggagatga 4260 agatatggga gcgtttaggc ttagacgatt acatcaaggt tttgtggcag aatgggcata 4320 agaggactat actaagtgac tacacagcag gaattaaaac agtgttatac tatcagcgaa 4380 agagcggaga cgtgactacg tttataggta acactgtcat aattgcggct tgtgtttgta 4440 atattttacc aatcgagaaa tgcatcaaag catctttctg cggtgacgac agtcttgttc 4500 taatgcccaa gggcttagac tattctgaag ttcaacagaa agccaatttg gtgtggaatt 4560 tcgaggcaaa gttgtttatg aaaaagcggc acgcttactt ctgtggtaag tatgttgttt 4620 ttcatgataa cggtgcagtc gtttttcccg acccgttgaa actcatcggg aagctcggta 4680 gtaaaaatat acaatcatgg gaccactgtg aagatttcag gcgtagtctt tgcgatgtcg 4740 ctacaaattt tggtaactgt gcgtattttt ctttattgga tgaggctgtc caggagaact 4800 ataagtctgc gggaagcggt tgttatgctt atcgtgcgct ttggcgattc ttgaccaacc 4860 ctcatctttt ccaaactttg tattttaatt gattgatgtc tctggtcgga aagtttgctc 4920 aatccttggg gttctgcgat ttactgttgg ttgacgctaa cgtgcatcgt ttaaccggtg 4980 aggagaaagt gattcagaag accagtgagt atctacagtt ctttaatagt ataattatta 5040 agtgttgtgc tgtaaaaacc agtgggtgcg tttcatttgt ccaagttcgt gtgtgctgtg 5100 tttcgtgtag gcgtaatagt ttttgtactt ttcgctgtcc aggtgttaag gttgctgttt 5160 cacaacagct tgtttaccca ggtgagtacg tactgcgtcc gtggaaagct ccaattccgt 5220 acacttataa accagtggtt tatctgaact gtacgaattt cgaacatgtc gctacgtgca 5280 cagaatgcgc aggatgtggt cccgccgcta gactatctga acccgagcaa ttttgtgaaa 5340 acacaattac tgggtctgga aaggctgggt ctggtgaagt caccgaagaa gatgtgcgct 5400 ttgatggaga cggatgtggt gaagatatcc ccgagggaaa ggacggtatt cccgttgcgt 5460 ctcacggaga aaatcaagga tctgggtaac tacaagtatg ttatgtttct ggcttgtgtg 5520 gtcagtggta gatggcatgt gcccacaact gttaaaggag aagtctttct gagtctcatg 5580 gataggaggt tgacaaacga gcgtgagagt gttattctca ctgccaatgc caaaccaagt 5640 gtcagtgagt ttcagataag aattcacccg cggtattcga tggtctcgtc ggatgcaatg 5700 caggaacctt tggagttgtt tgtgcatgtc aagggtctac agatggcgga gggttttagt 5760 ccattatcat tagagatagc tttttgtgtc gtttgttgtg atgttgtgat tgcaaaaagt 5820 ttaaaaatga aaatattgca gaacacagac aaattcggga atgcggaagg ggaagttggt 5880 agcgaaggtt tggacgacct gttatcaggt agtaacatgc ctagcatacg aacttctgct 5940 ttcaattcgc gaaggagtgt gaatgcaaac ccaaaaagag tttttaaggg gaagaaaggg 6000 aatgtgtgga gtgaggcaaa ggattttgct ggtgtaagga gaaagaaagg tgtggttgaa 6060 tcggatatgt tgacttctaa tgcggagtcg actgtttcga attattcaac tgaccaatct 6120 gatgccttat caaccggttt ctctacagac acttccatgg ctgtcggcca actgggccga 6180 ttacaagaca cttcttagtg tcttaagggc gacttcggca acgtcttttc agacgcaggc 6240 cggacgcgat tctatacgtt cacaattggc tggatgtgtc agcgaactag ttcaagttaa 6300 cgtaaggttt cccgaacgtt acttggtcta tgtcaatgat ccatctatca gtgatgtgtg 6360 gggtgctctt ttgaaggcga cggatacaaa aaatcgtata attgaggtgg ataacgagag 6420 gaacccgtcg aacaacgaaa ttgaatctgt cacacgacgt gtagatgatg cttctgtggc 6480 cattcgcatt aatgtcgaac ggttgctgaa gttgcttggt gaggtgcacg gtgtctacga 6540 ccgtgccttg tttgaacaag ttagtggatt gcggtgggct gatgattcag ctcccgcgtc 6600 tacttcgaag tagcgtggcg catacgagaa tgcgtagtgt ttatcccgtt ccactgaaat 6660 cgaaacgggt gatctgcata attgcagttg cttggctgga tcaacgtacc gtgaggagag 6720 aaatcatacg gtatgccgag tgttaaaagg ttgaggggtt cgaatccccc cttaccccgg 6780 gtaggggccc a 6791 //