ID HQ388350; SV 1; linear; genomic RNA; STD; VRL; 5666 BP. XX AC HQ388350; XX DT 23-SEP-2011 (Rel. 110, Created) DT 07-DEC-2011 (Rel. 111, Last updated, Version 4) XX DE Brassica yellows virus isolate BrYV-AJS, complete genome. XX KW . XX OS Brassica yellows virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5666 RX PUBMED; 21874520. RA Xiang H.Y., Dong S.W., Shang Q.X., Zhou C.J., Li D.W., Yu J.L., Han C.G.; RT "Molecular characterization of two genotypes of a new polerovirus infecting RT brassicas in China"; RL Arch. Virol. 156(12):2251-2255(2011). XX RN [2] RP 1-5666 RA Han C.G.; RT ; RL Submitted (30-SEP-2010) to the INSDC. RL Plant Pathology, China Agricultural University, No. 2 Yuanmingyuan West RL Road, Haidian District, Beijing 100193, China XX DR MD5; b55995c17d0854ee07e9d700445d22e2. DR EuropePMC; PMC4422679; 25946037. DR EuropePMC; PMC5120529; 27876078. DR EuropePMC; PMC6445299; 30657939. DR RFAM; RF01074; RF_site1. XX FH Key Location/Qualifiers FH FT source 1..5666 FT /organism="Brassica yellows virus" FT /host="Brassica campestris L." FT /isolate="BrYV-AJS" FT /mol_type="genomic RNA" FT /country="China:Jiangsu" FT /collection_date="16-Mar-2009" FT /note="genotype: A" FT /db_xref="taxon:1046403" FT 5'UTR 1..31 FT CDS 32..781 FT /codon_start=1 FT /product="P0" FT /note="ORF0" FT /db_xref="GOA:G3E233" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:G3E233" FT /protein_id="ADW41595.1" FT /translation="MQFVAHDNFHTLEVRKVRYLHSRQVTFLLAGLLLNIEQFVKAIKE FT RNNEFKIDIFLRSLLYQLPPHLGDHVHDDVRKSLLVPEPELCAWFSLQTGYAPASTSGR FT VNLYVPGTKTSRRRIIQRSLASNFSEKFKRFPECLFVGLEHFQRFLSIWTRDAERRLFS FT GCREIPVGSHTLVELANLGELLRVMVADEQFHNSRLLSRLAVYCYKIYGEDGFISFWRI FT ANLDYLDCFLTPEEILFSSSVYTEMFV" FT CDS join(174..1544,1544..3268) FT /codon_start=1 FT /ribosomal_slippage FT /product="P1-2 fusion protein" FT /note="ORF1-2" FT /db_xref="GOA:G3E234" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:G3E234" FT /protein_id="ADW41597.1" FT /translation="MNSKLIFFFALCSISFLPTSETTSTMTLGSPYLSPNQSFVPGSLY FT KRDTLPPPLQAVLTYTCQEPRPLVEESYNDLLRAISQKSSSDFQNVYSLALNISSDFCL FT SGLEMLKDASFLAVEKFLWGLTRLWSSLILASFSALWWLMSNFTTPVFCLALLYTVTRF FT MVKTVSFLFGGLPIWIISIVFSLLKKSFSALRSTPKCLYEKAIDGFKSFTIPQSPPKTC FT VIPITHASGNHAGYASCVKLYNGENALLTATHVLRDCPNAIAVSARGLQARIPLAEFKT FT IAKSDKGDVTLLRGPPNWEGLLGCKAANVITAANLAKCKATIYSLEKDGWACGYAEIVG FT SDGTDAMVLSQTEEGHSGSPYFNGKTILGVHSGASKKRNYNLMAPIPSIPGLTSPTYVF FT ETTAPQGRIFAQEDIAEIEDLYSDYKRVQNFKSKTGMNWGDVSEDDDIFFESKEDFSGK FT RSARRRPRNKRRRQLHPKDKQRRWERDDGENNLISNGKDKSREHREESGRTDLRESDED FT IKTPPQKSPKETAGEFERYFSSLYDWEVPTSPCEVPGFRHCGKLPQYYHPKQKEESRWG FT KTLIGIHPALGEKTSGFGWPKFGPEAELKSLRLQASRWLERAQSAEIPSDAERERVIQK FT TADVYHPCQTNGPAATRGGTLTWNNFMIDFKQAVFSLEFDAGIGVPYIAYGKPTHRGWV FT EDQRLLPVLAQLTFIRLQKMLEVNFEAMEPEELIRNGLCDPIRLFVKGEPHKQAKLDEG FT RYRLIMSVSLVDQLVARVLFQNQNKREIALWRAVPSKPGFGLSTDEQVLDFVKCLARQV FT GTTTSEVITNWKDYLTPTDCSGFDWSVVDWMLHDDMIVRNRLTIDLNPVTERLRSCWLR FT CVSNSVLCLSDGTLLAQTHPGVQKSGSYNTSSSNSRIRVMAAFHTGAAWAMAMGDDALE FT SNPADLAAYKRLGFKVEVSGQLEFCSHIFRAPDLALPVNENKMIYKLIFGYNPGSGNAE FT VVANYLAACFSVLNELRHDPASVELLYSWLVDPVLPQKISRE" FT CDS 174..1985 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:G3E235" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:G3E235" FT /protein_id="ADW41596.1" FT /translation="MNSKLIFFFALCSISFLPTSETTSTMTLGSPYLSPNQSFVPGSLY FT KRDTLPPPLQAVLTYTCQEPRPLVEESYNDLLRAISQKSSSDFQNVYSLALNISSDFCL FT SGLEMLKDASFLAVEKFLWGLTRLWSSLILASFSALWWLMSNFTTPVFCLALLYTVTRF FT MVKTVSFLFGGLPIWIISIVFSLLKKSFSALRSTPKCLYEKAIDGFKSFTIPQSPPKTC FT VIPITHASGNHAGYASCVKLYNGENALLTATHVLRDCPNAIAVSARGLQARIPLAEFKT FT IAKSDKGDVTLLRGPPNWEGLLGCKAANVITAANLAKCKATIYSLEKDGWACGYAEIVG FT SDGTDAMVLSQTEEGHSGSPYFNGKTILGVHSGASKKRNYNLMAPIPSIPGLTSPTYVF FT ETTAPQGRIFAQEDIAEIEDLYSDYKRVQNFKSKTGMNWGDVSEDDDIFFESKEDFSGN FT GVRGADRETNGEGSSTPKTNNVDGKEMMEKIISSLMGKINLENIEKKVVEQISAKAMKT FT SRPHRRRAPKKQPESSKDTSPHSTTGRYQPPHVRSPASVTAASCPNTTTPSKRKNHAGG FT RRSSGSIPHWVRKQAASAGPSSAPKQN" FT misc_feature 3269..3471 FT /note="intergenic NCR" FT CDS 3472..4080 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3" FT /db_xref="GOA:G3E236" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:G3E236" FT /protein_id="ADW41598.1" FT /translation="MNTVVGRRTINGRRRPRRQTRRIQRNQPVVVVQASRTTQRRPRRR FT RRGNNRTGRTVPTRGAGSSETFVFSKDNLAGSSSGAITFGPSLSDCPAFSNGILKAYNE FT YKISMVILEFVSEASSQNSGSIAYELDPHCKLNSLSSTINKFGITKPGRKTFTASFING FT IEWHDVAEDQFRILYKGNGSSSIAGPFRITIKCQFHNPK" FT CDS 3503..4030 FT /codon_start=1 FT /product="movement protein" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:G3E237" FT /protein_id="ADW41599.1" FT /translation="MEEDDHAGKQDAFSEISQWLWSKPLGQHNADLDDDEEVTTGQEEL FT FLPEEQVQARHLFSQKTISREVPAEQSRSGRVYQTARHSLMEYSRPTMSIKSQWSFWSS FT SPKPLPKIPVPSLTSWTHTVNSIHSPQRLTNSGSQSPGGKRLQRLSSTGSNGMTLPRTN FT SGSSTKAMVLHR" FT CDS 4267..5481 FT /codon_start=1 FT /product="read-through protein" FT /note="ORF5" FT /db_xref="GOA:G3E238" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:G3E238" FT /protein_id="ADW41600.1" FT /translation="MNWTNVDARWYSSNNVKAVPMYVFPVPEGTWSVEISTEGYQPTAS FT TTDPNKGKVDGMIAYSDDQSEVWNVGINQNCNITNLKADNSWKYGHPDMEINNCHFNQG FT QVLEMDGTISFHVETTGSDASFFLVGPAVQKQSKYNYAVSYGAWTDRDMELGLISVSLD FT EKDGSRGSAMKRPRREGHSKAVSTWETINLPEKENSEKSITSQRQDSKTQPQQGFSDAG FT SEDNKERDFTPGTRMFLPEDFEEPREVQNDDLLRDRGIVVDPSLLEIPDSPPPRADHKD FT TDPWAEVERYKSSHKALVGEDTRSRQSSLTGGSLAGGSLRKLKPVTPDEYEQAKLKDES FT RLQYEQDLAEYHKSLKRPSSALIPRDDGELMEMDPSQRKLMKNAGVNLDKYGRPIKKGF FT LSFRK" XX SQ Sequence 5666 BP; 1626 A; 1421 C; 1326 G; 1293 T; 0 other; acaaaagaaa ccaggaggga atcctaagtt gatgcaattt gttgctcacg acaactttca 60 cactctagaa gtcagaaaag tcaggtacct ccactcacga caagtaacgt ttcttttagc 120 aggtcttttg cttaacatcg aacaattcgt aaaagcaatc aaagagcgca acaatgaatt 180 caaaattgat atttttcttc gctctctgct ctatcagctt cctccccacc tcggagacca 240 cgtccacgat gacgttagga agtccttact tgtccccgaa ccagagcttt gtgcctggtt 300 ctctttacaa acgggatacg ctcccgcctc cacttcaggc cgtgttaact tatacgtgcc 360 aggaaccaag acctctcgta gaagaatcat acaacgatct cttgcgagca atttctcaga 420 aaagttcaag cgatttccag aatgtttatt cgttggcctt gaacatttcc agcgatttct 480 gtctatctgg actagagatg ctgaaagacg cctcttttct ggctgtcgag aaattcctgt 540 ggggtctcac acgcttgtgg agctcgctaa tcttggcgag cttctccgcg ttatggtggc 600 tgatgagcaa tttcacaact cccgtcttct gtctcgcctt gctgtatact gttacaagat 660 ttatggtgaa gacggtttca tttctttttg gaggattgcc aatctggatt atctcgattg 720 ttttctcact cctgaagaaa tccttttcag ctcttcggtc tacaccgaaa tgtttgtatg 780 aaaaggctat agacggtttc aagagtttca ctatcccgca aagcccccca aaaacttgcg 840 tgattcccat cacccacgca agcggaaacc acgctggcta cgccagctgc gtcaagctgt 900 acaatggaga aaatgcgttg ctgacagcga cacacgtctt acgtgattgt cccaacgcta 960 tagctgtttc cgccagaggg ctccaagctc ggattccact cgcagaattt aaaacaatcg 1020 cgaaatccga caaaggtgat gtaacccttc ttcgcggccc ccccaactgg gaaggactgt 1080 taggctgtaa agcggccaac gtcattaccg ctgccaacct tgcgaaatgc aaagcaacta 1140 tttactctct tgagaaggat ggttgggcat gcggctacgc cgagattgtc ggctcagacg 1200 gcactgatgc catggttctg agccagacag aagaaggaca ctccggaagc ccctacttta 1260 atggcaaaac catcttaggg gtccactcag gtgcaagcaa gaaaagaaat tacaacttaa 1320 tggcaccaat cccgtccatc cctgggctca ctagccctac atatgtgttt gagacaaccg 1380 caccgcaagg tcggattttc gcacaagagg acatcgccga gatcgaggat ctctactcag 1440 attacaaacg agtgcaaaat ttcaagtcca aaactggaat gaactggggc gatgtaagcg 1500 aggatgacga catcttcttc gaaagcaaag aagacttttc gggaaacgga gtgcgcggcg 1560 ccgaccgcga aacaaacggc gaaggcagct ccaccccaaa gacaaacaac gtcgatggga 1620 aagagatgat ggagaaaata atctcatctc taatgggaaa gataaatctc gagaacatcg 1680 agaagaaagt ggtcgaacag atctccgcga aagcgatgaa gacatcaaga ccccaccgca 1740 gaagagcccc aaagaaacag ccggagagtt cgaaagatac ttctcctcac tctacgactg 1800 ggaggtacca acctccccat gtgaggtccc cggcttccgt cactgcggca agctgcccca 1860 atactaccac cccaagcaaa aggaagaatc acgctggggg aagacgctca tcgggatcca 1920 tcccgcattg ggtgagaaaa caagcggctt cggctggccc aagttcggcc ccgaagcaga 1980 actaaagagc ctgcgactgc aggcttcacg gtggctggaa cgcgcccagt ccgcagaaat 2040 accctctgac gctgagaggg agcgtgtgat tcaaaagacc gcagatgttt accatccttg 2100 ccaaactaat ggacctgcgg caacccgagg aggaacactg acctggaaca acttcatgat 2160 agatttcaaa caggccgtgt tctcgctaga gttcgatgcc ggaataggcg tcccctatat 2220 tgcctatggc aagcccacgc atcgtgggtg ggtagaagat cagagactcc tcccagtcct 2280 agctcagttg accttcatcc gactacagaa gatgttggag gttaacttcg aagccatgga 2340 acctgaggag ctgatccgga acggtttgtg cgatcccatc cgattattcg tgaaaggtga 2400 accgcataaa caagcgaagc tcgatgaagg ccgctaccgt ctcattatga gcgtttccct 2460 cgtggatcaa ctggtagccc gggttctgtt tcaaaaccag aacaagcggg aaattgcctt 2520 atggagggcc gtccccagta aacccggttt tggcttgtct acggacgagc aagtgctgga 2580 cttcgtaaaa tgtctggccc gtcaagttgg aactacaacg tctgaagtta tcacaaactg 2640 gaaagattac ttgacgccta cggattgctc cggttttgac tggagtgttg tggactggat 2700 gctccacgac gatatgatcg tccgcaacag acttaccatc gacctcaacc ccgttacaga 2760 aagattaaga tcctgttggt tgagatgtgt ttcaaactca gttttgtgtc tgagcgatgg 2820 taccctttta gcccaaaccc atccgggcgt tcagaaaagt gggagctaca atacatcgag 2880 ctccaactcc cggattagag ttatggccgc ctttcataca ggtgctgcct gggctatggc 2940 gatgggcgat gatgccctcg agtccaatcc cgctgaccta gcagcgtata aaagactagg 3000 attcaaggta gaggtttccg gacaactgga attctgctct cacatcttta gagcgccgga 3060 cctcgccctc cctgtgaacg aaaataaaat gatctacaaa ttgatctttg gctacaaccc 3120 agggagcgga aacgctgagg tagttgcgaa ctacttagcc gcttgtttct cagttctgaa 3180 cgagttgcgg catgatccag cgtccgttga acttctttac tcgtggttag tcgacccagt 3240 gctaccacaa aagatatcca gggagtaaag aagcatacca gtcagcttac attgaaattc 3300 taaagagttt tctgcaatag taagagactt aagtaaaacc actcaacgat acaacggatt 3360 acaaattcct agcaggtttc accgcaggct tcgtttcatc gataccaata tccgtgatca 3420 gtatctattt catctaccta agaatctcta aacacgtacg cgaaatcgtt aatgaatacg 3480 gtcgtgggta gaagaacaat caatggaaga agacgaccac gcaggcaaac aagacgcatt 3540 cagcgaaatc agccagtggt tgtggtccaa gcctctcgga caacacaacg ccgacctaga 3600 cgacgacgaa gaggtaacaa ccggacagga agaactgttc ctaccagagg agcaggttca 3660 agcgagacat ttgttttctc aaaagacaat ctcgcgggaa gttccagcgg agcaatcacg 3720 ttcgggccga gtctatcaga ctgcccggca ttctctaatg gaatactcaa ggcctacaat 3780 gagtataaaa tctcaatggt cattctggag ttcgtctccg aagcctcttc ccaaaattcc 3840 ggttccatcg cttacgagct ggacccacac tgtaaactca attcactctc ctcaacgatt 3900 aacaaattcg ggatcacaaa gcccgggagg aaaacgttta cagcgtcttt catcaacggg 3960 atcgaatggc atgacgttgc cgaggaccaa ttcaggatcc tctacaaagg caatggttct 4020 tcatcgatag ctggtccttt cagaatcacc ataaagtgtc aattccacaa tcccaaatag 4080 gtagacgagg aacctagccc cagtccaggg ccaagccccc aaccaacacc aacaccaact 4140 aaagagtaca gatggatagt ttatactggc gtctgtagaa ctctgatcaa agcccaaaca 4200 acggacgatt cgatttatct gtatgatttg ggctcccaac gcctccggta catagagaat 4260 gaaaacatga actggaccaa cgtggacgcc cgatggtatt caagcaataa cgtcaaagcg 4320 gttcccatgt atgtgtttcc agtcccggaa ggaacctggt cggtcgaaat atcaacggaa 4380 ggttatcagc ctacagctag taccaccgac cctaacaagg gaaaagttga tggcatgatt 4440 gcctattctg atgatcaatc agaagtgtgg aacgttggaa taaatcaaaa ttgtaacatc 4500 actaacctga aagcagacaa ctcatggaag tatgggcacc cagatatgga aattaacaat 4560 tgccacttca atcagggaca ggttctagag atggatggta caatctcctt tcacgtagag 4620 accaccggtt cggatgcatc gttctttctg gtcggtcccg ctgttcaaaa acagtcgaag 4680 tacaactacg ccgtttcata cggagcgtgg acagatcgtg atatggagtt gggcttgatt 4740 tccgtttctt tggatgagaa agacggatcg agaggttccg ctatgaaaag acctcgtcga 4800 gaaggacact cgaaggcagt ctcaacctgg gagactataa acttaccgga gaaggaaaac 4860 tccgagaaat ccataaccag tcaaagacaa gactctaaaa ctcaacctca acaaggtttc 4920 tcagatgctg gttctgagga caacaaggaa cgggatttca cacccgggac tcgaatgttt 4980 cttcctgaag acttcgagga accccgtgag gttcagaatg acgatcttct cagagataga 5040 ggaattgtag tagacccctc cttgttggaa atacctgact cacctcctcc gagagcggac 5100 cataaggaca cagatccttg ggctgaggtc gaaagataca aatcttccca taaagccctt 5160 gtcggcgagg acacgcgttc ccgacaatca tccttaacag gaggttcgct tgctggcggc 5220 agtctcagaa aactgaagcc ggttacaccg gacgagtatg agcaggcgaa gctgaaagat 5280 gagtcgaggc tccagtacga acaggaccta gctgagtacc acaaaagttt gaaaagacct 5340 tcaagcgcgt taataccacg tgatgatggt gaactcatgg aaatggatcc ttctcaacga 5400 aagttgatga agaacgctgg agtcaacctt gataaatatg gcagaccaat taagaaaggt 5460 ttcctctctt tcaggaaata gtttccacag tactcaactg tgctcgttgg tagtgatacg 5520 aggcgaaaat caaaactacc cttatctagc tttattaata tttagcgaat aaagtcaagc 5580 cagagacact aaactggaac gactccgctt cgcggatagg caacgagtgt tctacgctgg 5640 gagaaatccc cacggcactt cggtgt 5666 //