ID HQ388349; SV 1; linear; genomic RNA; STD; VRL; 5666 BP. XX AC HQ388349; XX DT 23-SEP-2011 (Rel. 110, Created) DT 07-DEC-2011 (Rel. 111, Last updated, Version 4) XX DE Brassica yellows virus isolate BrYV-BBJ, complete genome. XX KW . XX OS Brassica yellows virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5666 RX PUBMED; 21874520. RA Xiang H.Y., Dong S.W., Shang Q.X., Zhou C.J., Li D.W., Yu J.L., Han C.G.; RT "Molecular characterization of two genotypes of a new polerovirus infecting RT brassicas in China"; RL Arch. Virol. 156(12):2251-2255(2011). XX RN [2] RP 1-5666 RA Han C.G.; RT ; RL Submitted (30-SEP-2010) to the INSDC. RL Plant Pathology, China Agricultural University, No. 2 Yuanmingyuan West RL Road, Haidian District, Beijing 100193, China XX DR MD5; 7fae858a64086dc0a870f5de8b78c364. DR EuropePMC; PMC4422679; 25946037. DR EuropePMC; PMC5120529; 27876078. XX FH Key Location/Qualifiers FH FT source 1..5666 FT /organism="Brassica yellows virus" FT /host="Brassica napus var. napobrassica" FT /isolate="BrYV-BBJ" FT /mol_type="genomic RNA" FT /country="China:Beijing" FT /collection_date="26-Sep-2008" FT /note="genotype: B" FT /db_xref="taxon:1046403" FT 5'UTR 1..31 FT CDS 32..781 FT /codon_start=1 FT /product="P0" FT /note="ORF0" FT /db_xref="GOA:G3E227" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:G3E227" FT /protein_id="ADW41589.1" FT /translation="MQFIAHDNFHTLEVRKVRYLHPKQVSFLLAGLLLNIKQFVKAIKE FT RNNAFKIDILLRSLLYQLPLYLGDHIHDDVRKSILVPEPELCAWFSLQTGYAPASTSGR FT VNLYVPGTKTSRRRIIQRSLASDFSEKFKRFPECLFVSLEHFRRFLSIWTRNAEERLFS FT GCREIPVGSHTLVELANLGELLRVMVAGEEFHNPRLLSRLAVHCHKIYGEDGFISFWRI FT ANLDYLDCFLTPEEILFSSSVYTEMFV" FT CDS join(174..1544,1544..3268) FT /codon_start=1 FT /ribosomal_slippage FT /product="P1-2 fusion protein" FT /note="ORF1-2" FT /db_xref="GOA:G3E228" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:G3E228" FT /protein_id="ADW41591.1" FT /translation="MHSKLIFCFVLCSTSFLSTSETTSTMMSGSPYLFLNQSFVPGSPY FT KRDMLPPPPQVVLTYTSQEPRPLVEESYNDLLRAISQKSSSDFQNAYSLALNISGDFCQ FT SGLETLKNASFLAVEKFLWGLTRLWSSLILASFYALWWLVRNFTTPVFCLALLYTVTRF FT MAKMVSFLFGGLPIWIISIVFSLLKKSFSALRSTPKCLYEKAIDGFQSFTIPQSPPKSC FT VIPITHASGNHAGYASCVKLYNGENALLTATHVLRDSNNAVAVSAKGLKARIPLAEFKT FT IAKSDKGDVTLLRGPPNWEGLLGCKAANVITADNLAKCKASIYSFERDGWVGGYAEIVG FT SEGTDVMVLSHTEGGHSGSPYFNGKTILGVHSGASATGNYNLMAPIPSIPGLTSPTYVF FT ETTAPQGRVFAQEDIAEIEKLYSKARQMIDFKSKTGNNWADLEEDEDIFYESKEDLSGK FT RSARRRPRNKRRKQLHPRDKQRRWERDDGENNLVSGGKNKSRENREESGRGDLRESDEN FT SKTPPQKSFKETAGEFERYFSSLYSWEIPTSTREVPGFRHCGKLPQYYHPKQKEESSWG FT KTLVGNHPALGEKTSGFGWPKFGPEAELKSLRLQASRWLDRAQSAEIPSDAERERVIQK FT TADVYHPCQTNGPAATRGGTLTWNNFMIDFKQAVFSLEFDAGIGVPYIAYGKPTHRGWV FT EDPKLLPVLAQLTFIRLQKMLEVNFEDMGPEELIQNGLCDPIRLFVKGEPHKQAKLDEG FT RYRLIMSVSPVDQLVARVLFQNQNKREIALWRAVPSKPGFGLSTDEQVLDFVKGLARQV FT GTTTSEVITNWKDYLTPTDCSGFDWSVADWMLQDDMIVRNRLTIDLNPATERLRSCWLR FT CISNSVLCLSDGTLLAQTHPGVQKSGSYNTSSSNSRIRVMAAFHTGAAWAMAMGDDALE FT SNPADLAAYKRLGFKVEVSGQLEFCSHIFRAPDLALPVNENKMIYKLIYGYNPGSGNAE FT VVANYLAACFSVLNELRHDPASVELLYSWLVDPVLPQKISRE" FT CDS 174..1985 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:G3E229" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:G3E229" FT /protein_id="ADW41590.1" FT /translation="MHSKLIFCFVLCSTSFLSTSETTSTMMSGSPYLFLNQSFVPGSPY FT KRDMLPPPPQVVLTYTSQEPRPLVEESYNDLLRAISQKSSSDFQNAYSLALNISGDFCQ FT SGLETLKNASFLAVEKFLWGLTRLWSSLILASFYALWWLVRNFTTPVFCLALLYTVTRF FT MAKMVSFLFGGLPIWIISIVFSLLKKSFSALRSTPKCLYEKAIDGFQSFTIPQSPPKSC FT VIPITHASGNHAGYASCVKLYNGENALLTATHVLRDSNNAVAVSAKGLKARIPLAEFKT FT IAKSDKGDVTLLRGPPNWEGLLGCKAANVITADNLAKCKASIYSFERDGWVGGYAEIVG FT SEGTDVMVLSHTEGGHSGSPYFNGKTILGVHSGASATGNYNLMAPIPSIPGLTSPTYVF FT ETTAPQGRVFAQEDIAEIEKLYSKARQMIDFKSKTGNNWADLEEDEDIFYESKEDLSGN FT GVRGADRGTNGESSSTPATNNVDGKEMMEKIISSLVGKINLEKIEKKVVEEISAKAMKT FT PRPRRRRASRKQPESSKDISPRSTAGRYQPPHVRSPASATAVSCPNTTTPSKRKNQAGG FT RHSSGTIPHWVRKQAASAGQNLAPKRN" FT misc_feature 3269..3471 FT /note="intergenic NCR" FT CDS 3472..4080 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3" FT /db_xref="GOA:G3E230" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:G3E230" FT /protein_id="ADW41592.1" FT /translation="MNTVVGRRTINGRRRPRRQTRRIQRNQPVVVVQASRTTQRRPRRR FT RRGNNRTGRTVPTRGAGSSETFVFSKDNLAGSSSGAITFGPSLSDCPAFSNGILKAYHE FT YKISMVILEFVSEASSQNSGSIAYELDPHCKLNSLSSTINKFGITKPGRKTFTASFING FT IEWHDVAEDQFRILYKGNGSSSIAGSFRITIKCQFHNPK" FT CDS 3503..4030 FT /codon_start=1 FT /product="movement protein" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:G3E231" FT /protein_id="ADW41593.1" FT /translation="MEEDDHAGKQGAFSEISQWLWSKPLGQHNADLDDDEEVTTGQEEL FT FLPEEQVQARHLFSQKTISREVPAEQSRSGRVYQTARHSLMEYSRPTMSIKSQWSFWSS FT SPKPLPKIPVPSLTSWTHTVNSIHSPQRLTNSGSQSPGGKRLQRLSSTGSNGMTLPRTN FT SGSSTKAMVLHR" FT CDS 4267..5481 FT /codon_start=1 FT /product="read-through protein" FT /note="ORF5" FT /db_xref="GOA:G3E232" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:G3E232" FT /protein_id="ADW41594.1" FT /translation="MNWTNVDARWYSSNNVKAVPMYVFPVPEGTWSVEISTEGYQPTAS FT TTNPNKGKVDGMIAYSDDQSEVWNVGINQNCNITNLKADNSWKYGHPDMEINNCHFNQG FT QVLEMDGTISFRVETTGSDASFFQVGPAVQKQSKYNYAVSYGAWTDRDMELGLISVSLD FT EKDGSRGSAMKRPRREGHSKAVSTWETINLPEKENSERSITSQRQDSKTQPQQGFSDAG FT SEDNKEWDFTPGTRMFLPEDFEEPREVQNDDLLRDRGIVVDPSLLEIPDSPPPRADHKD FT TDPWAEVERYKSSHKALVGEDTRSRQSSLTGGSLAGGSLRKLKPVTPDEYEQAKLKDES FT RLQHEQDLAEYHRSLKRPSSALIPRDDGELMEMDPSQRKLMKNAGVNLDKYGRPIKKGF FT LSFRK" XX SQ Sequence 5666 BP; 1635 A; 1404 C; 1333 G; 1294 T; 0 other; acaaaagaaa ccaggtggga atcctaagtt gatgcaattc attgctcacg ataactttca 60 cactctagaa gtcaggaaag tcagatacct ccacccaaaa caagtatcgt ttcttttagc 120 aggtttattg cttaacatca aacaatttgt aaaagcaatc aaagaacgca acaatgcatt 180 caaaattgat attttgcttc gttctctgct ctaccagctt cctctctacc tcggagacca 240 catccacgat gatgtcagga agtccatact tgttcctgaa ccagagcttt gtgcctggtt 300 ctccttacaa acgggatatg ctcccgcctc cacctcaggt cgtgttaact tatacgtccc 360 aggaaccaag acctctcgta gaagaatcat acaacgatct cttgcgagcg atttctcaga 420 aaagttcaag cgatttccag aatgcttatt cgttagcctt gaacatttcc ggcgatttct 480 gtcaatctgg actagaaacg ctgaagaacg cctcttttct ggctgtcgag aaattcctgt 540 ggggtctcac acgcttgtgg agctcgctaa tcttggcgag cttctacgcg ttatggtggc 600 tggtgaggaa tttcacaacc cccgtcttct gtctcgcctt gctgtacact gtcacaagat 660 ttatggcgaa gatggtttca tttctttttg gaggattgcc aatctggatt atctcgattg 720 ttttctcact cctgaagaaa tccttttcag ctcttcggtc tacaccgaaa tgtttgtatg 780 aaaaggctat agacgggttt cagagcttca ctatcccgca gagccccccc aaatcttgcg 840 tgattcctat cacccacgca agcggaaacc acgctggtta cgccagctgt gtaaagctgt 900 acaatggaga aaacgcgttg ttaacagcga ctcacgttct acgtgatagc aacaatgcag 960 tagctgtttc cgccaaaggg cttaaagctc ggattccact cgctgaattc aaaacaattg 1020 cgaaatccga caaaggtgat gttaccctcc tccgcggccc ccccaactgg gaaggactgt 1080 taggctgcaa ggcagccaac gtcataacgg ccgacaacct ggcgaaatgc aaagcatcca 1140 tatactcttt tgagagagat ggctgggttg gtggttatgc cgaaatcgtc ggctctgaag 1200 ggaccgatgt tatggtcctg agccacacgg aaggaggaca ctccggaagc ccctacttta 1260 atggtaaaac cattctaggg gttcattcag gtgccagtgc aactggtaat tacaatttga 1320 tggcaccaat cccgtcaatt cccggactca caagccccac ttatgtgttt gaaactactg 1380 ctccgcaagg acgagttttc gcacaagagg acattgctga gatagaaaag ctctattcca 1440 aagccagaca aatgatcgat ttcaaatcta agactggaaa taattgggct gatctagagg 1500 aagacgaaga catcttctat gaaagcaaag aagatctttc gggaaacgga gtgcgcggcg 1560 ccgaccgcgg aacaaacggc gaaagcagct ccacccccgc gacaaacaac gtcgatggga 1620 aagagatgat ggagaaaata atctcgtctc tggtgggaaa aataaatctc gagaaaatcg 1680 agaagaaagt ggtcgaggag atctccgcga aagcgatgaa aactccaaga ccccgccgca 1740 gaagagcttc aaggaaacag ccggagagtt cgaaagatat ttctcctcgc tctacagctg 1800 ggagatacca acctccacac gtgaggtccc cggcttccgc cactgcggta agctgcccca 1860 atactaccac cccaagcaaa aggaagaatc aagctggggg aagacactcg tcgggaacca 1920 tcccgcactg ggtgagaaaa caagcggctt cggctggcca aaatttggcc ccgaagcgga 1980 actaaagagc ctgcgattgc aggcttcaag gtggctggac cgcgcccagt ccgcagaaat 2040 accctctgac gctgagaggg agcgtgtgat acaaaagacc gcagatgttt accatccttg 2100 ccaaactaat ggacctgcgg caacccgagg aggaacactg acctggaaca atttcatgat 2160 cgatttcaaa caggctgtgt tctcgctaga gttcgatgcc ggaataggcg tcccctatat 2220 tgcctatggc aagcccacac accgtgggtg ggtagaagat ccaaagctcc tcccagtcct 2280 agctcaattg accttcatcc gactacagaa gatgttggag gtcaatttcg aggatatggg 2340 accagaggag ttgatccaga acggtttgtg cgaccccatc cgattattcg tgaaaggtga 2400 gccgcataaa caagcgaagc tcgatgaagg ccgctaccgc ctcatcatga gcgtttcccc 2460 cgtggatcaa ctggtagccc gggttctgtt tcaaaaccag aacaagcggg aaattgccct 2520 atggagggcc gtccccagta aacccggttt tggcttgtct acggatgagc aagtgctgga 2580 ctttgtgaaa ggtttggccc gtcaagttgg aactacaacg tctgaagtta ttacaaactg 2640 gaaagattac ttgacgccaa cggattgctc cggcttcgac tggagtgttg cggactggat 2700 gctccaagac gacatgatcg tccgcaatag acttaccatc gacctcaacc ctgcaacaga 2760 aagattaaga tcctgttggt tgagatgcat ctcaaactca gtgctatgcc tgagtgatgg 2820 taccctttta gcccaaaccc atccgggcgt tcagaaaagt gggagttata acacatcaag 2880 ctccaactcc cggatcagag ttatggccgc ctttcacaca ggcgctgcct gggctatggc 2940 gatgggcgat gacgccctcg agtccaatcc cgctgaccta gcagcgtaca aaagactagg 3000 attcaaggta gaggtttccg gacaactgga attctgctct cacatcttta gagcgccgga 3060 cctcgccctc cctgtgaacg aaaacaagat gatctataaa ttgatctatg gctacaaccc 3120 agggagcgga aacgctgagg tagttgcgaa ctacttggcc gcttgtttct cagttctgaa 3180 cgagttgcgg catgatccgg cgtccgttga acttctttac tcgtggttag tcgacccagt 3240 gctaccacaa aagatatcca gggagtaaag aagcaaacaa gttagcttac attgaaattc 3300 taaagagttt tctgcaacag taagagactt aagtaaaacc actcaaagat acaacggatt 3360 acaaattcct agcaggtttc accgcaggct tcgtttcatc gataccaata tccgtgatca 3420 gtatctattt catctaccta agaatctcta aacacgtacg cgaaattgtt aatgaatacg 3480 gtcgtgggta gaagaacaat caatggaaga agacgaccac gcaggcaaac aaggcgcatt 3540 cagcgaaatc agccagtggt tgtggtccaa gcctctcgga caacacaacg ccgacctaga 3600 cgacgacgaa gaggtaacaa ccggacagga agaactgttc ctaccagagg agcaggttca 3660 agcgagacat ttgttttctc aaaagacaat ctcgcgggaa gttccagcgg agcaatcacg 3720 ttcgggccga gtctatcaga ctgcccggca ttctctaatg gaatactcaa ggcctaccat 3780 gagtataaaa tctcaatggt cattctggag ttcgtctccg aagcctcttc ccaaaattcc 3840 ggttccatcg cttacgagct ggacccacac tgtaaactca attcactctc ctcaacgatt 3900 aacaaattcg ggatcacaaa gcccgggagg aaaacgttta cagcgtcttt catcaacggg 3960 atcgaatggc atgacgttgc cgaggaccaa ttcaggatcc tctacaaagg caatggttct 4020 tcatcgatag ctggttcttt tagaatcacc ataaagtgcc aattccataa tcccaaatag 4080 gtagacgagg aacctagccc cagtccaggg ccaagccccc aaccaacacc aacaccaact 4140 aaagagtaca gatggatagc ttacactggc gtctgtagaa ctctgatcaa agcccaaaca 4200 acggacgatt ctatttatct gtatgatttg ggctcccaac gcctccggta cattgagaat 4260 gaaaacatga actggaccaa cgtggacgcc cgatggtatt caagtaataa cgtcaaagcg 4320 gttcccatgt atgtgtttcc agtcccggaa ggaacgtggt cggtcgagat atcaacggaa 4380 ggttatcaac ctacagcaag taccaccaac cccaacaagg gaaaagttga tggcatgatt 4440 gcctattctg atgatcaatc agaagtgtgg aacgttggaa taaatcaaaa ttgtaacatc 4500 accaacctga aagcagacaa ctcatggaag tatgggcacc cagatatgga aattaacaat 4560 tgccacttca atcagggaca ggttctagag atggatggta caatctcctt tcgcgtagag 4620 accaccggtt cagacgcatc gttcttccag gtcggtcccg ctgttcaaaa acagtcgaag 4680 tacaactacg ccgtttcata cggagcgtgg acagatcgtg atatggagtt gggcttgatt 4740 tctgtttctt tggatgagaa agacggatca agaggttccg ctatgaaaag acctcgtcga 4800 gaaggacact cgaaggcagt ctcaacctgg gagactataa acttaccgga gaaggaaaac 4860 tccgagagat ccataaccag tcaaagacaa gactctaaaa ctcaacctca acaaggtttc 4920 tcagatgctg gttctgagga caacaaggaa tgggatttca cacccgggac tcgaatgttt 4980 cttcctgaag acttcgagga accccgtgag gttcagaatg acgatcttct cagagataga 5040 ggaattgtag tagacccctc cttgttggaa atacctgact cacctcctcc gagagcggac 5100 cataaggaca cagatccttg ggctgaggtc gaaagataca aatcttccca taaagccctt 5160 gtcggcgagg acacgcgttc ccgacaatca tccttaacag gaggttcgct tgctggcggc 5220 agtctcagaa aactgaagcc ggttacaccg gacgagtatg agcaggcgaa gctgaaagat 5280 gagtcgaggc tccagcacga acaggaccta gctgagtacc acagaagttt gaaaagacct 5340 tcaagcgcgt taataccacg tgatgatggt gaactcatgg aaatggatcc ttctcaacgt 5400 aagttgatga aaaacgctgg agtcaacctt gataaatatg gtagaccaat taagaaaggt 5460 ttcctctctt tcaggaaata gtttccacag tactcaactg tgctcgttgg tagtgatacg 5520 aggcgaaaat caaaactacc cttgtctagc tttattaata tttagctaat aaagtcaagc 5580 cagagacatt aaactggaac gactccgctt cgcgggtagg caacgagtgt tctacgctgg 5640 gagaaatccc tacggcactt cggtgt 5666 //