ID HQ388348; SV 2; linear; genomic RNA; STD; VRL; 5666 BP. XX AC HQ388348; XX DT 23-SEP-2011 (Rel. 110, Created) DT 20-NOV-2017 (Rel. 134, Last updated, Version 5) XX DE Brassica yellows virus isolate BrYV-ABJ, complete genome. XX KW . XX OS Brassica yellows virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5666 RX PUBMED; 21874520. RA Xiang H.Y., Dong S.W., Shang Q.X., Zhou C.J., Li D.W., Yu J.L., Han C.G.; RT "Molecular characterization of two genotypes of a new polerovirus infecting RT brassicas in China"; RL Arch. Virol. 156(12):2251-2255(2011). XX RN [2] RP 1-5666 RA Han C.G.; RT ; RL Submitted (30-SEP-2010) to the INSDC. RL Plant Pathology, China Agricultural University, No. 2 Yuanmingyuan West RL Road, Haidian District, Beijing 100193, China XX RN [3] RC Sequence update by submitter RP 1-5666 RA Han C.G.; RT ; RL Submitted (01-NOV-2017) to the INSDC. RL Plant Pathology, China Agricultural University, No. 2 Yuanmingyuan West RL Road, Haidian District, Beijing 100193, China XX DR MD5; a8ec967ca01ccd2c3bb14dff230f23cd. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF01074; RF_site1. XX CC On Nov 1, 2017 this sequence version replaced HQ388348.1. XX FH Key Location/Qualifiers FH FT source 1..5666 FT /organism="Brassica yellows virus" FT /host="Brassica napus var. napobrassica" FT /isolate="BrYV-ABJ" FT /mol_type="genomic RNA" FT /country="China:Beijing" FT /collection_date="26-Sep-2008" FT /note="genotype: A" FT /db_xref="taxon:1046403" FT 5'UTR 1..31 FT CDS 32..781 FT /codon_start=1 FT /product="P0" FT /note="ORF0" FT /db_xref="GOA:G3E221" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:G3E221" FT /protein_id="ADW41583.1" FT /translation="MQFVAHDNFHTLEVRKVRFLHPRQVTFLLAGLLLNIEQFVKAIKE FT RNNEFKIDIFIRSLLYQLPLLLGDHVHDDVRKSILVPEPELCAWFSLQTGYAPASTSGR FT VNLHVPGTKTSRRRIIQRSLASNFSEKFKRFPECLFVGLEHFQRFLSTWTRDAERRLFP FT GCREIPVGSHTLVELANVGELLRVMVADEQFHNSRLLSRLAVHCYKIYGEDGFISFWRI FT ANLDHFDCFLTPEEILFSSSVYTEMFV" FT CDS join(174..1544,1544..3268) FT /codon_start=1 FT /ribosomal_slippage FT /product="P1-2 fusion protein" FT /note="ORF1-2" FT /db_xref="GOA:G3E222" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:G3E222" FT /protein_id="ADW41585.1" FT /translation="MNSRLIFLFALCSISFLSFSETTSTMTLGSPYLSLNQSSAPGSLY FT KRDMLPPPPQAVLTYTCQEPRPLVEESYNDLLRAISQKSSSDFQNVYSLALNISSDFCL FT LGLEMLKDASFLAVEKFLWGLTRLWSSLMLASFSALWWLMSNFTTPVFCLALLYTVTRF FT MVKMVSFLFGGLPIWIISIAFSLLKKSFSALRSTPKCLYEKAIDGFKSFTIPQSPPKTC FT VIPITHASGNHAGYASCVKLYNGENALLTATHVLRDCPNAIAVSARGLQARIPLAEFKT FT IAKSDKGDVTLLRGPPNWEGLLGCKAANVITAANLAKCKATIYSLEKDGWACGYAEIVG FT SDGTDAMVLSQTEEGHSGSPYFNGKTVLGVHSGASKKRNYNLMAPIPSIPGLTSPTYVF FT ETTAPQGRIFAQEDVAEIENLYSGYKRLQNFKSKTGTNWGDMSEDDDIFFESKEDFSGK FT RSARRRPRNKRRRQLHPKDKQRRWERDDGENNLISSGKDKSREHREESGRTDLRESDED FT IKTPPQKSPKETAGEFERYFSSLYDWEVPTSPCEVPGFRHCGKLPQYYHPKQKEESRWG FT KTLIGIHPALGEKTSGFGWPKFGPEAELKSLRLQASRWLERAQSAEIPSDAERERVIQK FT TADVYHPCQTNGPAATRGGTLTWNNFMIDFKQAVFSLEFDAGIGVPYIAYGKPTHRGWV FT EDQRLLPVLAQLTFIRLQKMLEVNFEAMEPEELIRNGLCDPIRLFVKGEPHKQAKLDEG FT RYRLIMSVSLVDQLVARVLFQNQNKREIALWRAVPSKPGFGLSTDEQVLDFVKCLARQV FT GTTTSEVITNWKDHLTPTDCSGFDWSVADWMLQDDMIVRNRLTIDLNPVTERLRSCWLR FT CVSNSVLCLSDGTLLAQTHPGVQKSGSYNTSSSNSRIRVMAAFHTGAAWAMAMGDDALE FT SNPADLAAYKRLGFKVEVSGQLEFCSHIFRAPDLALPVNENKMIYKLIFGYNPGSGNAE FT VVANYLAACFSVLNELRHDPASVELLYSWLVDPVLPQKISRE" FT CDS 174..1985 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:G3E223" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:G3E223" FT /protein_id="ADW41584.1" FT /translation="MNSRLIFLFALCSISFLSFSETTSTMTLGSPYLSLNQSSAPGSLY FT KRDMLPPPPQAVLTYTCQEPRPLVEESYNDLLRAISQKSSSDFQNVYSLALNISSDFCL FT LGLEMLKDASFLAVEKFLWGLTRLWSSLMLASFSALWWLMSNFTTPVFCLALLYTVTRF FT MVKMVSFLFGGLPIWIISIAFSLLKKSFSALRSTPKCLYEKAIDGFKSFTIPQSPPKTC FT VIPITHASGNHAGYASCVKLYNGENALLTATHVLRDCPNAIAVSARGLQARIPLAEFKT FT IAKSDKGDVTLLRGPPNWEGLLGCKAANVITAANLAKCKATIYSLEKDGWACGYAEIVG FT SDGTDAMVLSQTEEGHSGSPYFNGKTVLGVHSGASKKRNYNLMAPIPSIPGLTSPTYVF FT ETTAPQGRIFAQEDVAEIENLYSGYKRLQNFKSKTGTNWGDMSEDDDIFFESKEDFSGN FT GVRGADRETNGEGSSTPKTNNVDGKEMMEKIISSLVGKINLENIEKKVVEQISAKAMKT FT SRPHRRRAPKKQPESSKDTSPHSTTGRYQPPHVRSPASVTAASCPNTTTPSKRKNHAGG FT RRSSGSIPHWVRKQAASAGPSSAPKQN" FT misc_feature 3269..3471 FT /note="intergenic NCR" FT CDS 3472..4080 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3" FT /db_xref="GOA:G3E224" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:G3E224" FT /protein_id="ADW41586.1" FT /translation="MNTVVGRRTINGRRRPRRQTRRIQRNQPVVVVQASRTTQRRPRRR FT RRGNNRTGRTVPTRGAGSSETFVFSKDNLAGSSSGAITFGPSLSDCPAFSNGILKAYHE FT YKISMVILEFVSEASSQNSGSIAYELDPHCKLNSLSSTINKFGITKPGRKTFTASFING FT IEWHDVAEDQFRILYKGNGSSSIAGSFRITMKCQFHNPK" FT CDS 3503..4030 FT /codon_start=1 FT /product="movement protein" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:G3E231" FT /protein_id="ADW41587.1" FT /translation="MEEDDHAGKQGAFSEISQWLWSKPLGQHNADLDDDEEVTTGQEEL FT FLPEEQVQARHLFSQKTISREVPAEQSRSGRVYQTARHSLMEYSRPTMSIKSQWSFWSS FT SPKPLPKIPVPSLTSWTHTVNSIHSPQRLTNSGSQSPGGKRLQRLSSTGSNGMTLPRTN FT SGSSTKAMVLHR" FT CDS 4267..5481 FT /codon_start=1 FT /product="read-through protein" FT /note="ORF5" FT /db_xref="GOA:G3E226" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:G3E226" FT /protein_id="ADW41588.1" FT /translation="MNWTNVDARWYSSNNVKAVPMYVFPVPEGTWSVEISTEGYQPTAS FT TTDPNKGKVDGMIAYSDDQSEVWNVGINQNCNITNLKADNSWKYGHPDMEINNCHFNQG FT QVLEMDGTISFHVETTGSDASFFLVGPAVQKQSKYNYAVSYGAWTDRDMELGLISVSLD FT EKDGSRGSAMKRPRREGHSKAVSTWETINLPEKENSEKSITSQRQDSKTQPQQGFSDAG FT SEDNKEWDFTPGTRMFLPEDFEEPREAQNDDLLRDRGIVVDPSLLEIPDSPPPRADHKD FT TDPWAEVERYKSSHKALVGEDTRSRQSSLTGGSLAGGSLRKLKPVTPDEYEQAKLKDES FT RLQYEQDLAEYHRSLKRPSSALIPRDDGELMEMDPSQRKLMKNAGVNLDKYGRPIKKGF FT LSFRK" FT 3'UTR 5482..5666 XX SQ Sequence 5666 BP; 1625 A; 1411 C; 1330 G; 1300 T; 0 other; acaaaagaaa ccaggaggga atcctaagtt gatgcaattt gtagctcacg acaactttca 60 cactctagaa gtcagaaaag ttagattcct ccatccgcga caagtaacgt ttcttttagc 120 aggtttattg cttaacatcg aacaattcgt aaaagcaatc aaagagcgca acaatgaatt 180 caagattgat atttttattc gctctctgct ctatcagctt cctctccttc tcggagacca 240 cgtccacgat gacgttagga agtccatact tgtccctgaa ccagagctct gcgcctggtt 300 ctctttacaa acgggatatg ctcccgcctc cacctcaggc cgtgttaact tacacgtgcc 360 aggaaccaag acctctcgta gaagaatcat acaacgatct cttgcgagca atttctcaga 420 aaagttcaag cgatttccag aatgtttatt cgttggcctt gaacatttcc agcgatttct 480 gtctacttgg actagagatg ctgaaagacg cctctttcct ggctgtcgag aaattcctgt 540 ggggtctcac acgcttgtgg agctcgctaa tgttggcgag cttctccgcg ttatggtggc 600 tgatgagcaa tttcacaact cccgtcttct gtctcgcctt gctgtacact gttacaagat 660 ttatggtgaa gatggtttca tttctttttg gaggattgcc aatctggatc atttcgattg 720 ctttctcact cctgaagaaa tccttttcag ctcttcggtc tacaccgaaa tgtttgtatg 780 aaaaggctat agacggtttt aagagtttta ctatcccgca aagcccccca aaaacttgcg 840 tgattcccat cacccacgca agcggaaacc acgctggcta cgccagctgt gtcaagctct 900 acaatggaga aaatgcgttg ttgacagcga cacacgtttt acgtgattgt cccaacgcca 960 tagctgtttc cgccagaggg ctccaagctc ggattccact cgctgaattc aaaacaatcg 1020 cgaaatccga caaaggtgat gtaacccttc ttcgcggccc ccccaactgg gaaggactgt 1080 taggctgcaa agcagccaac gtcattaccg ctgccaacct tgcgaaatgc aaagcaacta 1140 tttactctct tgagaaggat ggttgggcat gcggctacgc cgagatcgtc ggttcagacg 1200 gcactgatgc catggttctg agccagacgg aagaaggaca ctccggaagc ccctacttta 1260 atggcaaaac cgttttaggg gttcactcag gtgcaagtaa gaaaagaaat tacaatttaa 1320 tggcaccaat cccgtccatc cctgggctca cgagccctac atatgtgttt gagacaaccg 1380 caccgcaagg tcggattttc gcacaagagg acgtcgccga gatcgagaat ctctattcag 1440 ggtacaaacg attgcaaaat ttcaagtcca aaactggaac gaactggggc gatatgagcg 1500 aggatgacga tatcttcttc gaaagcaaag aagacttttc gggaaacgga gtgcgcggcg 1560 ccgaccgcga aacaaacggc gaaggcagct ccaccccaaa gacaaacaac gtcgatggga 1620 aagagatgat ggagaaaata atctcatctc tagtgggaaa gataaatctc gagaacatcg 1680 agaagaaagt ggtcgaacag atctccgcga aagcgatgaa gacatcaaga ccccaccgca 1740 gaagagcccc aaagaaacag ccggagagtt cgaaagatac ttctcctcac tctacgactg 1800 ggaggtacca acctccccat gtgaggtccc cggcttccgt cactgcggca agctgcccca 1860 atactaccac cccaagcaaa aggaagaatc acgctggggg aagacgctca tcgggatcca 1920 tcccgcattg ggtgagaaaa caagcggctt cggctggccc aagttcggcc ccgaagcaga 1980 actaaagagc ctgcgactgc aggcttcacg gtggctggaa cgcgcccagt ccgcagaaat 2040 accctctgac gctgagaggg agcgtgtgat tcaaaagacc gcagatgttt accatccttg 2100 ccaaactaat ggacctgcgg caacccgagg aggaacattg acctggaaca acttcatgat 2160 agatttcaaa caggccgtgt tctcgctaga gttcgatgcc ggaataggcg tcccctatat 2220 tgcctatggc aagcccacgc atcgtgggtg ggtagaagat cagagactcc tcccagtcct 2280 agctcagttg accttcatcc gactacagaa gatgttggag gttaacttcg aagccatgga 2340 acctgaggag ctgatccgga acggtttgtg cgatcccatc cgattattcg tgaaaggtga 2400 accgcataaa caagcgaagc tcgatgaagg ccgctaccgc ctcatcatga gcgtttccct 2460 cgtggatcaa ctggtagccc gggttctgtt tcaaaaccaa aacaagcggg aaattgcctt 2520 atggagggcc gtccccagta aacccggttt tggcttgtct acggacgagc aagtgctgga 2580 cttcgtaaaa tgtctggccc gtcaagttgg aactacaacg tctgaagtta tcacaaactg 2640 gaaagatcac ttgacgccta cggattgctc cggttttgac tggagtgttg cggactggat 2700 gctccaagac gatatgatcg tccgcaatag acttaccatc gacctcaacc ccgttacaga 2760 aagattaaga tcctgttggt tgagatgtgt ttcaaactca gttttgtgtc tgagcgatgg 2820 taccctttta gcccaaaccc atccgggcgt tcagaaaagt gggagctaca atacatcgag 2880 ctccaactcc cggatcagag ttatggccgc ctttcataca ggtgctgcct gggctatggc 2940 gatgggcgat gatgccctcg agtccaatcc cgctgaccta gcagcgtata aaagactagg 3000 tttcaaggta gaggtttccg gacaactgga attctgctct cacatcttta gagcgccgga 3060 cctcgccctc cctgtgaacg aaaataaaat gatctacaaa ttgatcttcg gctacaaccc 3120 agggagcgga aacgctgagg tagttgcgaa ctacttagcc gcttgtttct cagttctgaa 3180 cgagttgcgg catgatccag cgtccgttga acttctttac tcgtggttag ttgacccagt 3240 gctaccacaa aagatatcca gggagtaaag aagcaaacaa gttagcttac attgaaattc 3300 taaagagttt tctgcaacag taagagactt aagtaaaacc actcaaagat acaacggatt 3360 acaaattcct agcaggtttc accgcaggct tcgtttcatc gataccaata tccgtgatca 3420 gtatctattt catctaccta agaatctcta aacacgtacg cgaaatcgtt aatgaatacg 3480 gtcgtgggta gaagaacaat caatggaaga agacgaccac gcaggcaaac aaggcgcatt 3540 cagcgaaatc agccagtggt tgtggtccaa gcctctcgga caacacaacg ccgacctaga 3600 cgacgacgaa gaggtaacaa ccggacagga agaactgttc ctaccagagg agcaggttca 3660 agcgagacat ttgttttctc aaaagacaat ctcgcgggaa gttccagcgg agcaatcacg 3720 ttcgggccga gtctatcaga ctgcccggca ttctctaatg gaatactcaa ggcctaccat 3780 gagtataaaa tctcaatggt cattctggag ttcgtctccg aagcctcttc ccaaaattcc 3840 ggttccatcg cttacgagct ggacccacac tgtaaactca attcactctc ctcaacgatt 3900 aacaaattcg ggatcacaaa gcccgggagg aaaacgttta cagcgtcttt catcaacggg 3960 atcgaatggc atgacgttgc cgaggaccaa ttcaggatcc tctacaaagg caatggttct 4020 tcatcgatag ctggttcttt tagaatcacc atgaagtgcc aattccataa tcccaaatag 4080 gtagacgagg aacctagccc cagtccaggg ccaagccccc aaccaacacc aacaccaact 4140 aaagagtaca gatggatagt ttatactggc gtctgtagaa ctctgatcaa agcccaaaca 4200 acggacgatt ccatttatct gtatgatttg ggctcccaac gcctccggta cattgagaat 4260 gaaaacatga actggaccaa cgtggacgcc cgatggtatt caagtaataa cgtcaaagcg 4320 gttcccatgt atgtgtttcc agtcccggaa ggaacgtggt cggtcgagat atcaacggaa 4380 ggttatcaac ctacagcaag taccaccgac cctaacaagg gaaaagttga tggcatgatt 4440 gcctattctg atgatcaatc agaagtgtgg aacgttggaa taaatcaaaa ttgtaacatc 4500 accaacctga aagcagacaa ctcatggaag tatgggcacc cagatatgga aattaacaat 4560 tgccacttca atcagggaca ggttctagag atggatggta caatctcctt tcacgtagag 4620 accaccggtt cagacgcatc gttcttcctg gtcggtcccg ctgttcaaaa acagtcgaag 4680 tacaactacg ccgtttcata cggagcgtgg acagatcgtg atatggagtt gggcttgatt 4740 tctgtttctt tggatgagaa agacggatca agaggttccg ctatgaaaag acctcgtcga 4800 gaaggacact cgaaggcagt ctcaacctgg gagactataa acttaccgga gaaggaaaac 4860 tccgagaaat ccataaccag tcaaagacaa gactctaaaa ctcaacctca acaaggtttc 4920 tcagatgctg gttctgagga caacaaggaa tgggatttca cacccgggac tcgaatgttt 4980 cttcctgaag acttcgagga accccgtgag gctcagaatg acgatcttct cagagataga 5040 ggaattgtag tagacccctc cttgttggaa atacctgact cacctcctcc gagagcggac 5100 cataaggaca cagatccttg ggctgaggtc gaaagataca aatcttccca taaagccctt 5160 gtcggcgagg acacgcgttc ccgacaatca tccctaacag gaggttcgct tgctggcggc 5220 agtctcagaa aactgaagcc ggttacaccg gacgagtatg agcaggcgaa gctgaaagat 5280 gagtcgaggc tccagtacga acaggaccta gctgagtacc acagaagttt gaaaagacct 5340 tcaagcgcgt taataccacg tgatgatggt gaactcatgg aaatggatcc ttctcaacga 5400 aagttgatga aaaacgctgg agtcaacctt gataaatatg gtagaccaat taagaaaggt 5460 ttcctctctt tcaggaaata gtttccacag tactcaactg tgctcgttgg tagtgatacg 5520 aggcgaaaat caaaactacc cttatctagc tttgttaata tttagctaat aaagtcaagc 5580 cagagacatt aaactggaac gactccgctt cgcggatagg caacgagtgt tctacgctgg 5640 gagaaatccc tacggcactt cggtgt 5666 //