ID HQ385226; SV 1; circular; genomic DNA; STD; VRL; 7934 BP. XX AC HQ385226; XX DT 03-FEB-2011 (Rel. 107, Created) DT 07-DEC-2011 (Rel. 111, Last updated, Version 3) XX DE Rice tungro bacilliform virus isolate Kanyakumari, complete genome. XX KW . XX OS Rice tungro bacilliform virus OC Viruses; Ortervirales; Caulimoviridae; Tungrovirus. XX RN [1] RP 1-7934 RX PUBMED; 21866358. RA Sharma S., Rabindran R., Robin S., Dasgupta I.; RT "Analysis of the complete DNA sequence of rice tungro bacilliform virus RT from southern India indicates it to be a product of recombination"; RL Arch. Virol. 156(12):2257-2262(2011). XX RN [2] RP 1-7934 RA Sharma S., Rabindran R., Dasgupta I.; RT ; RL Submitted (07-OCT-2010) to the INSDC. RL Department of Plant Molecular Biology, University of Delhi South Campus, RL Benito Juarez Road, New Delhi 110 021, India XX DR MD5; 27ed6f75b49253a2e67c7ef7fc160e61. XX FH Key Location/Qualifiers FH FT source 1..7934 FT /organism="Rice tungro bacilliform virus" FT /host="Oryza sativa" FT /isolate="Kanyakumari" FT /mol_type="genomic DNA" FT /country="India:Kanyakumari" FT /collected_by="R. Rabindran" FT /collection_date="Dec-2007" FT /identified_by="S. Sharma, R.Rabindran, and I. Dasgupta" FT /db_xref="taxon:10654" FT CDS <98..670 FT /codon_start=1 FT /product="P24" FT /note="ORF I" FT /db_xref="UniProtKB/TrEMBL:E9N013" FT /protein_id="ADV58676.1" FT /translation="IESRLEKLGFLDLAIWGSPKTQKYSLSTENIAFYCYFHKPENTST FT TGHNHTFHSDNKQLNTIVDLIVKHAEKTKNIKEELDNYSKLLEKILELKPTKKQIEKLL FT ENQNTINQNFDYIKEQNSQIEKSLRKTNKLEDSINTLLIEIQQARPKEVELRTLKIAEQ FT NSKAIEKFEKEIQDLREILEYLKHQST" FT CDS 667..1002 FT /codon_start=1 FT /product="P12" FT /note="ORF II" FT /db_xref="InterPro:IPR009417" FT /db_xref="UniProtKB/TrEMBL:Q91DT4" FT /protein_id="ADV58677.1" FT /translation="MSADYPTFKEALEKFKDLESETANKDKFGWVFTLQGIKTTADVNL FT ASKGLVQLYALQEIDKKINNLSAQVGKIPTTSGSSSSAGAIVPAGSNTQGQYKAPPKKG FT IKRKYPG" FT CDS 999..6023 FT /codon_start=1 FT /product="P194" FT /note="ORF III" FT /db_xref="GOA:E9N015" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR028919" FT /db_xref="InterPro:IPR034728" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:E9N015" FT /protein_id="ADV58678.1" FT /translation="MSLRPFSGTSRTLTQDSASESNIKKGKSSTKRELIEEIDVAKEIE FT NFDWNKLSGIKSNKLYEKNWQEKAKLKQQSIISAYKEEAISVTTNAFITSLFPNEVIKN FT VKNQGKLYYHIGMMAIGIKGLHRKKIGTKVMVMFYDDSFGKAKEASIGSIEMDMNAGCG FT VFYSCPDFAKYIKDLSHLKIGIQTLGYENYEGKNLSIAIKTIGRLTTNIQARYKMNVKD FT IVEQISSQGITMVAPMEIDSSHLDGNEWNLSKFMIQEGTSRVPSKALIYQNLRGGESLR FT FSNYAQTKMHDPTEINSDEDEDLKILGEQLNAKMATFQEETLEQKLERIKEEKKQLLAK FT LEAKKKEIESKSLKMAVIEDDFNPNNEYLDDSYSELEDLEFEQLGLTGWEDLDQESLET FT EEITEWENPNQVLTREIKAFKSVSEQIEDIFGELLKEHGNYDMALKNLEERYDLKNLEG FT VKNLEEIAKASTSKMMDVKPVKRPKEEQTAYEDDMRDDWRRKELTANPEVSSKDRNFER FT IGGSYKKNFYPSKSEILNLDHVPPQFYYDQIITWEGIVKNEWEARKKDGMDMWSWMDGR FT ITGMVLYLIQDWISKNQAAYNDIKSRGDRPENFVKMVKDRFLIEDPTDERRTALQRLAL FT RELEALNCEDPVKIQPFMAEYLKKAAEAKKGFDVIYVERLFDRLPEAVGKLIKKEFLDA FT GNSYEAGIGVAVSYISTWMRLKCIKETEAKTQKKASLAFCRSIYTIGDYKKRKTPKRVT FT NYNRNKRKNYARKPNIKRKCRCYICQDENHLANRCPRRYVNQARASMIEGLEEDIVSIA FT SDDEDYENFFEIIELEEFLSKSGQQDHEHTWETGGKKEKTCDICDYYTDFNKTIVCKTC FT EIQYCTTCANQLGIEVEKTYKKSREEELCDELRKTIVNLDLRLTIVEHKLEMNKLQEQF FT DSLQLSKEPSSSETIKALAMQAKESNFIKTNINRTAGCYVEVKLTFLNNSKITTALIDS FT GSTHNIICPLLVPEIWVKSLNLDIVMTTIDNSKYSLNRGLHDEVKIQFKEVDESFGIKY FT SLGQTYVAPKPTGTFIIGHRFMTSEHGSITIHKDYVTIQKTTGIYPTARHELKSEFARK FT HGGQRPLFSNIPETYNKIPKLYGYKSEIEDKNLLTLIKELEYLGYIGDDITKNKTNWVC FT DFKIINPDINITCNTIPYTPADKEVFEKQIKELLDNKLIRKASPTCRHRTAAFVVRNHS FT EEVAQKPRIVYNYKRLNDNMVTDPFNIPHKISMINLLQRARIFSKFDLKAGFHHMKLKE FT DFKDWTTFTCSEGLYTWNVCPFGIANAPCAFQRFMQESFGDLKFALLYIDDILIASSNE FT QEHIKHLKLFFTRVKEVGCVLSKKKSKMFLKEVEYLGVEIKEGKISLQPHIVEKIKKFD FT KSKLSTLKGLQAYLGLLNYARGYIKDLSKLVGPLYKKTGKSGQRTFNKEDWNIIFKIER FT EVDKIKPLSRPEESDYIIIETDASEEGWGAVLICKPDKYASKDTEKIAGYASGNFGEKK FT TWTSLDYEIEAINEALNKFQIYLDRDFTIRTDCEAIVKGIKTEDYKKRSKTRWIKLRDN FT LLKDGYKPTFEHIKGNKNFLPNFLSREGDFILKCLQNTTSTIESSDSRSSTIESSDSQS FT SIKESLDSWTPTKESSDSSCRIKLHPLSSRQKVKGE" FT CDS <6047..7213 FT /codon_start=1 FT /product="P46" FT /note="ORF IV" FT /db_xref="InterPro:IPR009347" FT /db_xref="UniProtKB/TrEMBL:E9N016" FT /protein_id="ADV58679.1" FT /translation="INKECPYSIHHLGKNRVPIYKQGNLFHSEFTGRLSHLSNGLIDHL FT FTFSDNTERVRKLHLISEHIYNKEFEIQTYSLECEKLREQVSHLKNTVETQKQQLREMR FT DKLEGLREPLKKPIYTTQDKEALRNFFCKERSMEYIYHHIKRLARESYYSHLNKLQKDM FT EFLRGFYLSFLTNVKFLVLFETGLWTTENIESHFFNNSSLFITQEEGERQMTKGLLEKN FT SEDEAGRYILTSGFVSDLYAHGFIKQINFTNKLPEGIPLVIREKIMQYKFPGANTILIE FT KEIPKWDFDLMKRSTTFRTQIYILQGHRNFYGFSPIKSYEPITPEEFGIEYYSWEQIYE FT DDEADVVYQSISTRISKVVREYAWPCDDSDIMSCTTSMEEEYAHRLEA" XX SQ Sequence 7934 BP; 3220 A; 1284 C; 1438 G; 1992 T; 0 other; tggtatcaga gcgatgttcg aactttaagg gaaattttga tacaaactta tacatacatt 60 tacatatgtt ctgaagaggg atcttacttt ctcaaatatt gagtcacgtc ttgaaaaact 120 tggatttcta gatttagcaa tttggggatc accaaaaaca caaaaatata gtctatctac 180 tgaaaatata gccttttatt gttactttca taagcctgaa aacacatcca ctactggaca 240 taatcacacc tttcattctg ataacaagca acttaatact atcgtagatt taatagttaa 300 gcacgcagaa aaaaccaaaa atattaagga agaactagat aactatagta agttactaga 360 aaagatctta gaactaaagc ctactaagaa gcaaatagaa aaacttttgg aaaaccaaaa 420 caccataaac cagaactttg attatatcaa agagcaaaac tctcaaattg aaaaatcttt 480 gagaaaaacg aataaattag aagactctat aaacaccttg cttatagaaa tacagcaagc 540 tagacctaaa gaagtagaac ttcgtactct taaaatagca gaacaaaact ctaaagctat 600 agaaaaattt gaaaaagaaa tacaagatct aagagaaatc ttagaatatc ttaagcacca 660 atctacatga gtgctgatta tcctaccttt aaggaagcct tagaaaaatt taaggattta 720 gagtctgaaa cagcaaacaa agataagttt ggctgggttt ttactcttca agggataaaa 780 acaacagcag acgtaaatct agcatctaaa ggactagtac aactttacgc tttacaagaa 840 atcgataaga aaataaataa tttatctgca caagttggta aaatacctac aactagtggt 900 agcagtagtt cagcaggagc catagtacct gcaggaagta atacccaagg tcagtataaa 960 gcaccaccta agaagggaat taaaagaaag tatccaggat gagtcttaga ccgtttagcg 1020 gtacctctag aactctaact caagattcag ctagtgaatc taatattaaa aaaggaaaat 1080 cttcaacaaa aagagaatta atagaagaaa tagatgttgc taaggaaata gaaaactttg 1140 attggaataa attatctggt ataaaatcaa ataaacttta tgagaaaaat tggcaagaaa 1200 aagccaaatt aaaacaacaa tcaataattt ctgcatataa agaagaagct attagtgtca 1260 cgactaatgc cttcattact tcattattcc ctaatgaagt cataaaaaat gttaagaatc 1320 aaggaaaact ttattatcat ataggcatga tggccatagg aattaaggga ttacatagaa 1380 agaaaattgg cactaaagta atggtaatgt tttatgatga tagctttggg aaagccaaag 1440 aagctagtat aggatcaata gaaatggata tgaatgcagg ttgcggagta ttttactctt 1500 gccctgactt cgctaaatat ataaaagacc tatcccatct caagatagga attcagaccc 1560 taggatatga aaattatgaa ggaaaaaatc tttccatagc cataaaaact ataggaagat 1620 taacaacaaa tatccaggct agatataaaa tgaatgtcaa agatatagtt gaacaaatat 1680 catcccaagg aataactatg gtagcaccca tggaaataga ttcatcacat ttagatggga 1740 atgaatggaa cttaagtaaa ttcatgatac aggaaggaac aagtagggtt cctagtaaag 1800 ccctaatata tcaaaatctg cgtggagggg aatcacttag gttttcaaac tatgcacaaa 1860 ctaaaatgca cgatccaaca gaaataaatt ctgatgaaga tgaagatttg aaaattctag 1920 gagaacaatt aaatgccaaa atggcaacat ttcaagaaga aaccctagaa caaaaattag 1980 aacgcataaa agaagaaaag aaacaacttc tagcaaaact agaagctaaa aagaaagaaa 2040 ttgaatcaaa atccttaaaa atggcagtca tagaagatga ctttaaccca aacaacgaat 2100 atctagacga ttcatattct gaattagaag atctagaatt cgaacaatta ggattaactg 2160 gttgggaaga tctagaccaa gaaagtctag aaacagaaga aattactgaa tgggaaaacc 2220 caaaccaagt cctaactaga gaaatcaaag cctttaaatc agtctctgaa caaatagaag 2280 atatattcgg agaattatta aaagaacatg gaaattatga catggcccta aaaaatttag 2340 aggaaagata tgatctaaaa aacttagaag gagtcaaaaa tttagaagaa atagctaaag 2400 catccacatc aaaaatgatg gatgtaaaac cagtaaaaag accaaaagaa gaacaaacgg 2460 catatgaaga tgatatgaga gatgattgga gaagaaaaga gttaacagcc aatccagaag 2520 tatcttcaaa agatagaaac ttcgaaagaa taggaggatc atataagaaa aacttttacc 2580 caagtaaaag tgaaatccta aacctagatc atgtaccccc acaattttac tatgaccaaa 2640 tcataacttg ggaaggaata gtaaaaaacg aatgggaagc cagaaaaaag gatggaatgg 2700 acatgtggtc ttggatggat ggaagaataa caggaatggt tttatatcta atacaagatt 2760 ggatatctaa aaaccaagcc gcctataatg atataaaatc tcgaggagat agaccagaaa 2820 acttcgtaaa aatggtaaaa gataggttct taatagaaga tcctacagat gaaagaagaa 2880 cagccctaca aaggttagcc ctaagggaat tagaagcctt aaactgtgaa gatccagtta 2940 aaattcagcc atttatggca gaatacctta agaaagctgc tgaagctaaa aaaggatttg 3000 atgtcatata tgtcgaaaga ctatttgaca gacttcctga agcagtagga aaactaataa 3060 aaaaggaatt tctagatgca ggaaattcat atgaagcagg cataggagta gctgtttcat 3120 acatatctac atggatgaga ttaaaatgca taaaagaaac agaagctaaa acacaaaaga 3180 aagcatcatt agcattctgt cgatctatat atactatagg agattataag aaaagaaaaa 3240 caccaaaacg tgttacgaac tataatagaa acaaaaggaa gaattatgct agaaaaccta 3300 acataaaaag aaagtgtagg tgttatattt gccaggatga aaaccaccta gcaaacagat 3360 gccctagaag atatgtcaat caagctagag cgagcatgat tgaaggatta gaggaagata 3420 tagtttccat agcttcagac gatgaagact atgagaactt ttttgaaata attgaattag 3480 aagaattttt aagtaaatca ggacaacaag atcacgagca cacctgggaa acaggaggta 3540 agaaagaaaa aacttgtgat atttgtgatt attatactga tttcaataaa accatagtat 3600 gcaaaacatg tgaaatacaa tattgtacta cttgcgctaa tcaacttggt atagaagtag 3660 aaaaaacata taagaaatct agagaagaag aattatgtga tgaattaaga aaaacaatcg 3720 tcaatctaga tctaaggttg acaatagttg aacataaact agaaatgaat aaattacaag 3780 aacaatttga ttccttgcaa ttatctaaag aacctagttc ttcagaaacc ataaaagcct 3840 tagccatgca agcaaaagaa tcaaatttca taaaaactaa cattaataga acagcaggat 3900 gttatgtaga agttaaatta actttcctaa ataattcaaa aataaccact gcattaatag 3960 attccggttc aacacataat attatctgtc cattattggt accagaaata tgggttaaaa 4020 gcctgaactt agatattgtt atgaccacaa tagacaacag taaatatagc ctcaacagag 4080 gactacatga tgaagtaaaa atacaattta aagaagtcga tgaaagtttt gggataaaat 4140 acagtttggg acaaacatat gttgccccta aaccaactgg aactttcata attggacata 4200 gatttatgac cagtgaacat ggtagtatta caattcataa agactatgtt acaatccaaa 4260 aaaccacggg aatctacccc actgctcgtc atgaactcaa atcagagttt gcgcgaaagc 4320 atggtggaca aagaccccta ttttcaaaca ttccagaaac ctacaacaaa attccaaaat 4380 tatacgggta taagagtgaa atagaagata aaaatttact tactcttatt aaagaactag 4440 aatatttggg atatatcgga gacgatataa caaaaaataa aactaattgg gtatgtgact 4500 tcaaaatcat taacccagat ataaatatca cttgcaacac aatcccatat accccagcag 4560 ataaagaagt ctttgaaaaa caaatcaaag aactgttaga taacaagtta ataaggaaag 4620 caagtcctac ttgcagacat agaactgcag catttgtagt aagaaaccac tctgaagaag 4680 tagcacaaaa accaagaata gtttataact acaaaagatt aaatgataat atggttacag 4740 atccttttaa tatcccacat aagatttcta tgataaatct attacaaaga gctaggatat 4800 tctctaaatt tgatttgaaa gcaggatttc atcatatgaa acttaaagaa gattttaaag 4860 attggacaac ttttacttgt tctgaaggat tatatacttg gaatgtctgt ccatttggta 4920 tagctaacgc tccatgtgca tttcaaagat ttatgcagga atcctttgga gatttaaagt 4980 ttgcattatt atacatagat gacatcctaa ttgcatcaag taatgaacaa gagcatatta 5040 agcaccttaa gttattcttt actagagtta aggaagtagg ttgtgtcctt agcaagaaaa 5100 aatcaaaaat gttcctaaaa gaagtggaat acttaggagt ggagataaag gaaggaaaga 5160 ttagcctaca accacacata gtggaaaaga taaagaagtt tgataagagc aagttgagta 5220 ccctaaaggg attacaggca tatctaggcc tactcaatta tgctagagga tacattaaag 5280 acctatcaaa gttggtagga ccactatata aaaagactgg caagagtggc caacgaacct 5340 ttaataaaga agattggaat ataatcttta agatagaaag agaagttgat aagattaaac 5400 ctttaagtag accagaagaa tctgactaca taataataga gacagatgca tcagaagaag 5460 gatggggagc agtcttaatt tgcaaacctg ataaatatgc tagcaaagat actgaaaaga 5520 tagcaggtta tgcatcagga aactttggag aaaagaagac ttggactagt ttagattatg 5580 agatcgaagc tataaacgaa gcattaaata agtttcagat atatttggat agagacttta 5640 caattagaac agattgtgag gcaatagtca aaggcataaa aacagaagat tacaaaaaga 5700 gatccaagac aagatggatc aaactgagag ataatcttct taaagatgga tacaagccta 5760 cctttgagca tatcaaagga aacaaaaact ttttgccaaa cttcctatcc cgcgagggag 5820 attttatttt aaaatgtctt caaaacacga cttcaactat agaatcttcg gattcacgat 5880 cttcaactat agaatcttcg gattcacagt cttcaattaa agaatcttta gattcatgga 5940 ctccaactaa agaatcttcg gattcatctt gcaggataaa acttcatcct ctgtcttcaa 6000 ggcagaaggt gaaaggcgag taatcgctaa agtacacggt gtttccatca ataaagagtg 6060 cccatactca atccaccacc tcggtaaaaa ccgagtcccc atatataaac agggaaacct 6120 gtttcacagt gagtttactg gtaggcttag ccacttatca aacggtctta tagatcatct 6180 ttttacattt tcagataata ctgagcgagt taggaagctc caccttatat cagagcatat 6240 ctacaataaa gaatttgaaa tacagaccta tagtcttgag tgtgagaaat taagagagca 6300 ggttagccac ttaaaaaata ctgttgaaac acaaaaacaa cagttaagag agatgagaga 6360 taaactagag ggactgagag agccactcaa aaagcctata tacacaaccc aggataagga 6420 agcacttcgt aacttctttt gcaaagaaag aagtatggag tacatttatc accacataaa 6480 gaggttagct cgagagagct attattcaca tctgaataaa cttcagaagg atatggaatt 6540 cctcagggga ttctacttat ctttcttaac gaacgtcaag tttctagttc tctttgagac 6600 tggactctgg acaactgaaa atatcgaaag tcacttcttc aacaatagca gtctcttcat 6660 aacccaggaa gaaggagaaa ggcagatgac aaaaggattg ctagaaaaga acagtgaaga 6720 tgaagctgga agatacattc tgacatcagg atttgtgtct gacctatacg cccatggatt 6780 cataaaacag ataaacttca ctaataagct cccagaaggc attccattag tcataagaga 6840 aaaaataatg cagtataagt tcccaggagc aaatactatc ttaattgaga aagaaatccc 6900 aaaatgggac tttgatctca tgaaaagaag cacaacattc agaactcaga tttacattct 6960 ccaaggtcat agaaactttt atggattttc acccataaaa tcctatgaac ccattacacc 7020 cgaagagttc ggaatagaat attacagctg ggaacaaatc tatgaagatg acgaagcaga 7080 cgttgtctat caatcaataa gcaccagaat ctccaaagtt gtaagggagt atgcttggcc 7140 atgtgatgac agcgacatca tgtcctgcac cacctcaatg gaagaagaat atgcccacag 7200 gctggaggca taaagagatg atccaaagat aaaggaacaa agcagcaaag catcaataaa 7260 agaagactga agacataaag ggggaatcca ctttaaatta ttgtacctct acaattattg 7320 taagagtgtg taaaatctag cctacccctg aacactccta tataaggaga agtagtctgc 7380 atgtaatagg cattcgaaat ccacacaccc agagtagcac acacttccac aagagcaaga 7440 gaagagctga tcttctcacc tcctctccaa agaaggatta gctgcaatgg ctcaggtcag 7500 tgagtagtcg tctttaaggt tcctctagga acctctgtgt catatgtatt gtatcatgtt 7560 tgtatcatca agaacttatc cgctgcatga ataaagctct atattgttgt ttacactcct 7620 tagataagat atgaagccat acccgtttct taaatcaata gttctaagat aattctagca 7680 tgaaaaaggg ggctaaaggg ggaagaagta ccgtcagggc gtgtgatgcc aagggaacaa 7740 gtaccatgaa taccctaata agtgctagag ggaagataag aactaacgaa ataaggaaca 7800 tttggtagct ggtttcttat tatcattatc aagtagctct tcctcatcac gaaaactgca 7860 aaggcctgcc aaccctaggc tgaaacagtg actaggccga ggaattgcga aaagataggg 7920 ggggtgccta catc 7934 //