ID HQ343294; SV 1; linear; genomic RNA; STD; VRL; 2479 BP. XX AC HQ343294; XX DT 02-OCT-2011 (Rel. 110, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Rice stripe virus isolate TA-CN5 segment RNA3, complete sequence. XX KW . XX OS Tenuivirus oryzaclavatae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus. XX RN [1] RP 1-2479 RA Jonson M.-G., Sen L., Choi H.-S., Lee G.-S., Kim C.-S., Kim K.-H.; RT "Development of a RT-PCR restriction analysis-based method for detecting RT natural genetic reassortment of Rice stripe virus RNA segments"; RL Unpublished. XX RN [2] RP 1-2479 RA Jonson M.-G., Sen L., Choi H.-S., Lee G.-S., Kim C.-S., Kim K.-H.; RT ; RL Submitted (04-OCT-2010) to the INSDC. RL Department of Agricultural Biotechnology and Plant Genomics and Breeding RL Institute, Seoul National University, 599 Gwanak-ro, Daehak-dong, RL Gwanak-gu, Seoul 151-921, South Korea XX DR MD5; 6b2929a0aebc4fe0ef343f4d863b5590. XX FH Key Location/Qualifiers FH FT source 1..2479 FT /organism="Tenuivirus oryzaclavatae" FT /segment="RNA3" FT /host="Oryza sativa japonica" FT /isolate="TA-CN5" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="2009" FT /db_xref="taxon:3052763" FT gene 66..701 FT /gene="NS3" FT CDS 66..701 FT /codon_start=1 FT /gene="NS3" FT /product="NS3" FT /db_xref="InterPro:IPR007974" FT /db_xref="UniProtKB/TrEMBL:O10387" FT /protein_id="ADY76596.1" FT /translation="MNVFTSSVGSVEFDHPLLLENDLTSLSINCDDVHCSSRALCYIYD FT IHSSRHPSIDEHQFLRLLHGPDDAVTLGSFLKTLIWILSHDKNLPEEYRLPTIMMSSSY FT VKFFTEVKPRPPSTNCWTCRMSKDNLPFTVPSVKGFPPDAELYIVPISDHDGKPVKFDN FT RKTLYRSPSKKRHKYVISSDKPPLSARYVKYVDSSALEPSPGSSPAVL" FT gene complement(1419..2387) FT /gene="N" FT CDS complement(1419..2387) FT /codon_start=1 FT /gene="N" FT /product="N" FT /db_xref="GOA:Q8JRD1" FT /db_xref="InterPro:IPR008864" FT /db_xref="InterPro:IPR009522" FT /db_xref="UniProtKB/TrEMBL:Q8JRD1" FT /protein_id="ADY76597.1" FT /translation="MGTNKPATLADLQKAINDISKDALSYLTAHKADVVTFAGQIEYAG FT YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR FT YGIVSSVGTNANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV FT PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT FT TGLLVITCKSKNLADKKKEDGRKKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTR FT LYLAQQSKLMKILAENTSKTASEVSGLVKEFFEDEAEGADD" XX SQ Sequence 2479 BP; 767 A; 525 C; 426 G; 760 T; 1 other; acacaaagtc ctgggtaaaa tagttatatt tttactatac aatacaattc cgacatcatc 60 taagtatgaa cgtgttcaca tcgtctgtag gttctgtgga atttgatcat cctctgcttt 120 tggagaatga tctgaccagt ttgagcataa actgtgatga tgtccattgt tcttcaagag 180 ccttatgtta tatatatgac attcattcat ctaggcaccc ttccattgat gagcatcagt 240 ttctgaggct tcttcatggc cctgatgatg ctgtcactct aggctccttc ttgaaaactc 300 tgatctggat tctgtcccat gataagaatc tcccagagga gtacagactt cctactataa 360 tgatgtcatc ctcatatgtg aagttcttca ctgaagtgaa gccaagaccc ccatcaacaa 420 attgctggac atgcagaatg tccaaagaca atttgccctt taccgttcct agtgtcaagg 480 gatttcctcc agatgcagag ctctacattg tgccaatatc tgaccatgat ggaaagcctg 540 tcaaatttga caataggaag actctatata gatcacctag taagaaaagg cataagtatg 600 tcatttcttc cgataaacca cctcttagtg cacgttatgt taagtacgtt gattctagtg 660 cactagaacc ctcaccaggc agctctccag ctgtgctgta gacataaaag gaaaaagaaa 720 aaaaagaaaa agaaaaaata aaacaaataa tcaaaaaaac aaaaaaatct taaaaatgga 780 aaacaaaaaa accaaaaaac taaaaaacta aaaaacatca tgacctaaga aacttcacac 840 cactggttgt ctagtgggct ctagttggta gagaaagcta tgcttttgcc taaagccatg 900 attggccaat ccttaaaatg tgctaagcac attatccgaa gatgtctcgg atgttttttt 960 acctaaccta atttttttgt attttatata attttttgat ttttttgtat tttatataca 1020 tttttttgtt ttttgatttt tttgttttta atattttttc ttctaattac tacattaata 1080 tatttaatta ttcatatact taaaatatat agtatgtatt ataaaaatag agcaatataa 1140 taaagctagt acaactacat tacaaacata tatctaaata tttagataga cttatcaaac 1200 taaagactct actagagagt gagtaataat aatggcaata cctcacacac aaagcccaaa 1260 accacacaga aaaaataact tatggaatat aattaaaaac taaaatatac acatataaaa 1320 atatatatta acttacacct aaagaaacaa cacactgttt gaagacatac atcttccatg 1380 gagatatgag atcccccaca actactgact tgttcagtct agtcatctgc accttctgcc 1440 tcgtcctcga agaactcctt caccaaccca ctgacttcag atgctgtctt tgaggtgttc 1500 tcagcaagga tcttcatcag tttgctctgt tgagccaagt acagccttgt ctgattccca 1560 taagtgctga tcgtattgac agacatacca gccagcgcat cgaagattgt ggtcttcact 1620 ttcccattgg tgatgaattc atctaagacc ttctttctgc catcttcctt cttcttgtca 1680 gcaaggttct ttgacttgca tgtgatgacc aggagaccag ttgtgtactt catcatgtct 1740 atgtcttttg tcagaccacg ctccttcttc ttaccctctg gcatggtctt tttggttatt 1800 tggaaggagt gaatgatgtg cacaacaaac aaaatgtgac ttagggagtg agttgtgcag 1860 taaggagctg tttcactctc cagtttgata tattgtggaa catagtccca cagtaagtta 1920 tcacatcctg ttagtcccag gtcagaggag tccacagcca tcttaacacc agaaatttgt 1980 ctcacaactt catgtgagac atttgggaaw agctgagcca gccttccaag tgtgatggca 2040 ttagcatttg tccccaccga ggacactatc ccatacctcg acaccaaggt cgaagcctct 2100 gtgcttccag ccgccacttt cactttctta gtgacatctc tcacaaagcc agtgcctctc 2160 acatatctca tggtgatgca catagtcata tccttggcca gtgtgtcacc acctttgtcc 2220 ttcaatatgc caatcagagt tgcagcatca tagcctgcat actctatctg accagcaaag 2280 gtcacaacat cagctttatg agcagtcagg taagacaacg catctttgga gatgtcattg 2340 attgccttct gcaaatcagc tagagtggct ggcttgttgg tgcccattgt agcaagaggt 2400 actggaggaa tggttgcggc ttagatgaaa tttggaatgt aaaagcaaaa tcaaaaattt 2460 tattacccag actttgtgt 2479 //