ID HQ343293; SV 1; linear; genomic RNA; STD; VRL; 2479 BP. XX AC HQ343293; XX DT 02-OCT-2011 (Rel. 110, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Rice stripe virus isolate SC-CN70 segment RNA3, complete sequence. XX KW . XX OS Tenuivirus oryzaclavatae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus. XX RN [1] RP 1-2479 RA Jonson M.-G., Sen L., Choi H.-S., Lee G.-S., Kim C.-S., Kim K.-H.; RT "Development of a RT-PCR restriction analysis-based method for detecting RT natural genetic reassortment of Rice stripe virus RNA segments"; RL Unpublished. XX RN [2] RP 1-2479 RA Jonson M.-G., Sen L., Choi H.-S., Lee G.-S., Kim C.-S., Kim K.-H.; RT ; RL Submitted (04-OCT-2010) to the INSDC. RL Department of Agricultural Biotechnology and Plant Genomics and Breeding RL Institute, Seoul National University, 599 Gwanak-ro, Daehak-dong, RL Gwanak-gu, Seoul 151-921, South Korea XX DR MD5; 13f4c3c8d0396f7ffc71c0f06b2d7ed1. XX FH Key Location/Qualifiers FH FT source 1..2479 FT /organism="Tenuivirus oryzaclavatae" FT /segment="RNA3" FT /host="Oryza sativa japonica" FT /isolate="SC-CN70" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="2009" FT /db_xref="taxon:3052763" FT gene 66..701 FT /gene="NS3" FT CDS 66..701 FT /codon_start=1 FT /gene="NS3" FT /product="NS3" FT /db_xref="InterPro:IPR007974" FT /db_xref="UniProtKB/TrEMBL:O10387" FT /protein_id="ADY76594.1" FT /translation="MNVFTSSVGSVEFDHPLLLENDLTSLSINCDDVHCSSRALCYIYD FT IHSSRHPSIDEHQFLRLLHGPDDAVTLGSFLKTLIWILSHDKNLPEEYRLPTIMMSSSY FT VKFFTEVKPRPPSTNCWTCRMSKDNLPFTVPSVKGFPPDAELYIVPISDHDGKPVKFDN FT RKTLYRSPSKKRHKYVISSDKPPLSARYVKYVDSSALEPSPGSSPAVL" FT gene complement(1419..2387) FT /gene="N" FT CDS complement(1419..2387) FT /codon_start=1 FT /gene="N" FT /product="N" FT /db_xref="GOA:G4WH27" FT /db_xref="InterPro:IPR008864" FT /db_xref="InterPro:IPR009522" FT /db_xref="UniProtKB/TrEMBL:G4WH27" FT /protein_id="ADY76595.1" FT /translation="MGTNKPATLADLQKAINDISKDALSYLTAHKADVVTFAGQIEYAG FT YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR FT YGIVSSVGINANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV FT PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT FT TGLLVITCKSKNLADKKKEDGRKKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTR FT LYLAQQSKLMKILAENTSKTASEVSGLVKEFFEDEAEGADD" XX SQ Sequence 2479 BP; 763 A; 527 C; 427 G; 762 T; 0 other; acacaaagtc ctgggtaaaa tagttatatt tttactatac aatacaattc cgacatcatc 60 taagtatgaa cgtgttcaca tcgtctgtgg gttctgtgga atttgatcat cctctgcttt 120 tggagaatga tctgaccagt ttgagcataa actgtgatga tgtccattgt tcttcaagag 180 ccttatgtta tatatatgac attcattcat ctaggcaccc ttccattgat gagcatcagt 240 ttctgaggct tcttcatggc cctgatgatg ctgtcactct aggctccttc ttgaaaactc 300 tgatctggat tctgtcccat gataagaatc tcccagaaga gtacagactt cctactataa 360 tgatgtcatc ctcatatgtg aagttcttca ctgaagtgaa gccaagaccc ccatcaacaa 420 attgctggac atgcagaatg tccaaagaca atttgccctt taccgttcct agtgtaaagg 480 gatttcctcc agatgcagag ctctacattg tgccaatatc tgaccatgat ggaaagcctg 540 tcaaatttga caatagaaag actctatata gatcacctag taagaaaagg cataagtatg 600 tcatttcttc tgataaacca cctcttagtg cacgttatgt taagtacgtt gattctagtg 660 cacttgaacc ctcaccaggc agctctccag ctgtgctgta gaaataaaaa aataaaaaaa 720 gaaaaaaaga aaaagaaaat taaacaaata atcaaaaaaa cacaaaaaat cttaaaaatg 780 aaaacaaaaa aaccaaaaaa ctaaaaaaac taaaaaacat catgacctaa gaaactgcac 840 accactggtt gtctagtggg ctctagttgg tagagaaagc tatgcttttg cctaaagcca 900 tgattggcca atccttaaaa tgtgctaagc acattatccg agatgtctcg gatgtttttt 960 acctaaccta atttttgtat ttttatataa ttttttgatt tttttgtatt ttatatacat 1020 atttttgttt tttgattttt ttgtttttta atattttttc ttctaattac tacattacta 1080 tatttgatta ttcatatact taaaatatat agtatgtatt ataaaaatag agcaatatac 1140 taaagctagt ataaccacat tacaaacata tatctaaata tttagataga cttatcaaac 1200 taaagactct actagagagt gagtaataat aatggcaata catcacacac aaagcccaaa 1260 accacacaga caaaataact tatggaatac aattaaaaac taaaatatac acatataaat 1320 atacatatta acttacacct aaagaaacaa cacactgttt gaagacatgc atcttccagg 1380 gagatatgag atcccccaca actactgact tgttcagtct agtcatctgc accttctgcc 1440 tcgtcctcga agaactcctt caccaacccg ctgacttcag atgctgtctt tgaagtgttc 1500 tcagcaagga tcttcatcag tttgctctgt tgagccaagt acagccttgt ctgattccca 1560 taagtgctga tcgtattgac agacatacca gccagcgcat cgaagattgt ggtcttcact 1620 ttcccattgg tgatgaattc atctaagacc ttcttcctgc catcttcctt cttcttgtca 1680 gccaggttct ttgacttgca tgtgatgacc aggagaccag ttgtgtactt catcatgtct 1740 atgtcttttg tcagaccacg ctccttcttc ttaccctctg gcatggtttt tttggttatt 1800 tggaaggagt gaatgatgtg cacaacaaac aaaatgtgac ttagggagtg agttgtgcag 1860 taaggagctg tttcactctc cagtttgata tattgtggaa catagtccca cagtaagttg 1920 tcacatcctg ttagtcccag gtcagaggag tccacagcca tcttaacacc agaaatttgt 1980 ctcacaactt catgtgagac atttgggaat agctgagcca gccttccaag tgtgatagca 2040 ttggcattta tccccaccga ggacactatc ccatacctcg acaccaaggt cgaagcctct 2100 gtgcttccag ccgccacttt cactttctta gtgacatctc tcacaaagcc agtgcctctc 2160 acatatctca tggtgatgca catagtcata tccttggcca gtgtgtcacc acctttgtcc 2220 tttaatatgc caatcagtgt tgcagcatca tagcctgcat actctatctg accagcaaag 2280 gtcacaacat cagctttatg agcagtcagg taagacaacg catctttgga gatgtcattg 2340 attgccttct gcaaatcagc tagagtggct ggcttgttgg tgcccattgt agcaagaggt 2400 actggaggaa tggttgcggc ttagatgaaa tttggaatgt aaaagcaaaa tcgaaaattt 2460 tattacccag actttgtgt 2479 //