ID HQ343292; SV 1; linear; genomic RNA; STD; VRL; 2476 BP. XX AC HQ343292; XX DT 02-OCT-2011 (Rel. 110, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Rice stripe virus isolate SC-CN6 segment RNA3, complete sequence. XX KW . XX OS Tenuivirus oryzaclavatae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus. XX RN [1] RP 1-2476 RA Jonson M.-G., Sen L., Choi H.-S., Lee G.-S., Kim C.-S., Kim K.-H.; RT "Development of a RT-PCR restriction analysis-based method for detecting RT natural genetic reassortment of Rice stripe virus RNA segments"; RL Unpublished. XX RN [2] RP 1-2476 RA Jonson M.-G., Sen L., Choi H.-S., Lee G.-S., Kim C.-S., Kim K.-H.; RT ; RL Submitted (04-OCT-2010) to the INSDC. RL Department of Agricultural Biotechnology and Plant Genomics and Breeding RL Institute, Seoul National University, 599 Gwanak-ro, Daehak-dong, RL Gwanak-gu, Seoul 151-921, South Korea XX DR MD5; 21315c5ff328ddbcedb9987c4ea2805f. XX FH Key Location/Qualifiers FH FT source 1..2476 FT /organism="Tenuivirus oryzaclavatae" FT /segment="RNA3" FT /host="Oryza sativa japonica" FT /isolate="SC-CN6" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="2009" FT /db_xref="taxon:3052763" FT gene 66..701 FT /gene="NS3" FT CDS 66..701 FT /codon_start=1 FT /gene="NS3" FT /product="NS3" FT /db_xref="InterPro:IPR007974" FT /db_xref="UniProtKB/TrEMBL:G4WH24" FT /protein_id="ADY76592.1" FT /translation="MNVFTSSVGSVEFDHPLLLENDLTSLSINCDDVHCSSRALCYIYD FT IHSSRHPSIDEHQFLRLLHGPDDAVTLGSFLKTLIWILSHDKNLPEEYRLPTIMMSSSY FT VKFFTEVKPRPPSTNCWTCRMSKDNLPFTVPSVKGFPPDAELYIVPISDHDGKPVKFDN FT RKTLYRSPSKKRHKYVISSDKPPLSARYVKYVDSSPLEPSPGSSPAVL" FT gene complement(1416..2384) FT /gene="N" FT CDS complement(1416..2384) FT /codon_start=1 FT /gene="N" FT /product="N" FT /db_xref="GOA:Q8JRD1" FT /db_xref="InterPro:IPR008864" FT /db_xref="InterPro:IPR009522" FT /db_xref="UniProtKB/TrEMBL:Q8JRD1" FT /protein_id="ADY76593.1" FT /translation="MGTNKPATLADLQKAINDISKDALSYLTAHKADVVTFAGQIEYAG FT YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR FT YGIVSSVGTNANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV FT PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT FT TGLLVITCKSKNLADKKKEDGRKKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTR FT LYLAQQSKLMKILAENTSKTASEVSGLVKEFFEDEAEGADD" XX SQ Sequence 2476 BP; 759 A; 526 C; 429 G; 762 T; 0 other; acacaaagtc ctgggtaaaa tagttatatt tttactatac aatacaattc cgacatcatc 60 taagtatgaa cgtgttcaca tcgtctgtgg gttctgtgga atttgatcat cctctgcttt 120 tggagaatga tctgaccagt ttgagcataa actgtgatga tgtccattgt tcttcaagag 180 ccttatgtta tatatatgac attcattcat ctaggcaccc ttccattgat gagcatcagt 240 ttctgaggct tcttcatggc cctgatgatg ctgtcactct aggctccttc ttgaaaactc 300 tgatctggat tctgtcccat gataagaatc tcccagaaga gtacagactt cctactataa 360 tgatgtcatc ctcatatgtg aagttcttca ctgaagtgaa gccaagacct ccatcaacaa 420 attgctggac atgcagaatg tccaaagaca acttgccctt tactgttcct agtgtcaagg 480 ggtttcctcc agatgcagag ctctacattg tgccaatatc tgaccatgat ggaaagcctg 540 tcaaatttga caataggaag actctatata gatcacctag taagaaaagg cataagtatg 600 ttatttcttc tgataaacca cctcttagtg cacgttatgt taagtacgtt gattctagtc 660 cactagaacc ctcaccaggc agctctccag ctgtgctgta gaaataaaaa gaaaaaagaa 720 aaaaagaaaa taaaacaaat aatcaaaaaa caaaaaaatc ttaaaaatga aaaacacaaa 780 aaaaccaaaa aactaaaaaa actaaaaaac atcatgacct aaaaaaaact gcataccact 840 ggttgtctag tgggctctag ttggtagaga aagctatgct tttgcctaaa gccatgattg 900 gccaatcctt aaaatgtgct aagcacatta tccgaagatg tctcggatgt tttttaccta 960 acctaatttt tttgtatttt tatataattt tttgattttt ttgtatttta tatacatatt 1020 tttgtttttt gatttttttg ttttttaata ttttttcttc taattactac attaaaatat 1080 ttgattattc atatacttaa aatatatagt atgtattata aaaatagagc aatataataa 1140 agctagtata actacattac aaacatatat ctaaatattt agatagactt atcaaactga 1200 agactctact agagagtgag taataataat gtcaatacat cacacacaaa gcccaaaacc 1260 acacagacaa aacaacttat ggaatataat ttaaaactaa gatatacaca tataaatata 1320 catattaact tacacctaaa gaaacaacac actgtttgaa gacatgcatc ttccagggag 1380 atatgagatc ccccacaacc actgacttgc tcagtctagt catctgcacc ttctgcctcg 1440 tcctcgaaga actccttcac caacccgctg acttcagatg ctgtctttga agtgttctca 1500 gcaaggatct tcatcagttt gctctgttga gccaagtaca gccttgtctg attcccataa 1560 gtgctgatcg tattgacaga cataccagcc agcgcatcga agattgtggt cttcactttc 1620 ccattggtga tgaattcatc taagaccttc tttctgccat cttccttctt cttgtcagcc 1680 aggttctttg atttgcatgt gatgaccagg agaccagttg tgtacttcat catgtctatg 1740 tcttttgtca gaccacgctc cttcttctta ccctctggca tggtcttttt ggttatttgg 1800 aaggagtgaa tgatgtgcac aacaaacaaa atgtgactta gggaatgagt tgtgcagtaa 1860 ggagctgttt cactctccag tttgatatat tgtggaacat agtcccacag caagttgtca 1920 catcctgtta gtcccaggtc agaggagtcc acagccatct taacaccaga aatttgtctc 1980 acaacttcat gtgagacatt tgggaatagc tgagccagcc ttccaagtgt gatagcattg 2040 gcatttgtcc ccaccgagga cactatccca tacctcgaca ccaaggtcga agcctctgtg 2100 cttccagccg ccactttcac tttcttagtg acatctctca caaagccagt gcctctcaca 2160 tatctcatgg tgatgcacat agtcatatcc ttggccagtg tgtcaccacc tttgtccttc 2220 aatatgccaa tcagagttgc agcatcatag cctgcatact ctatctgacc agcaaaggtc 2280 acaacgtcag ctttatgagc agtcaggtaa gacaacgcat ctttggagat gtcattgatt 2340 gccttctgca aatcagctag agtggctggc ttgttggtgc ccattgtagc aagaggtact 2400 ggaggaatgg ttgcggctta gatgaaattt ggaatgtaaa agcaaaatcg aaaattttat 2460 tacccagact ttgtgt 2476 //